Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,448,541 |
+C |
intergenic (+46/‑92) |
ytfQ → / → ytfR |
putative LACI‑type transcriptional regulator/YtfR |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,448,541 | 1 | . | C | 100.0%
| 602.6
/ NA
| 200 | intergenic (+46/‑92) | ytfQ/ytfR | putative LACI‑type transcriptional regulator/YtfR |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base C (118/82); total (118/82) |
Only 100 of 218 total aligned reads displayed.
ATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCG‑G‑CGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCG > NC_000913/4448449‑4448623
|
aTACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCg < 2:850308/93‑1 (MQ=255)
aTACCGCAAAAGAAGAATAGGTGCAGAAGAACAATAAGAGAAAATGAGAGTTGCTTTGCCAGAAGCCGTTTCATAAGCCGGATAAGGCGCTCg < 2:4769048/93‑1 (MQ=255)
aCCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCgcg < 2:5630869/93‑3 (MQ=255)
agaaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGc < 1:4841734/93‑1 (MQ=37)
agaaTTAGAGAAGAAGAAAAATATGGGGGATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGc > 1:3724829/1‑93 (MQ=25)
gaaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCg > 2:6044405/1‑93 (MQ=37)
gaaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGACGGATAAGGCGCTCGCGCCGCATCCGGCg > 2:4044697/1‑93 (MQ=37)
aaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGa > 2:5915878/1‑93 (MQ=37)
aaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGa < 1:3768567/93‑1 (MQ=37)
aaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGa > 2:5265573/1‑93 (MQ=37)
aaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGa < 1:597161/93‑1 (MQ=37)
aTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGAATCCGGCGag > 1:5002075/1‑92 (MQ=37)
ttAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATg > 1:4244395/1‑93 (MQ=37)
agagAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGt < 1:5651618/93‑1 (MQ=37)
gagaAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTg > 1:3030620/1‑93 (MQ=37)
gagaAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTg > 2:4071761/1‑93 (MQ=37)
gagaAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTg > 1:2423600/1‑93 (MQ=37)
agaagaagaAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGc > 1:118362/1‑93 (MQ=37)
gaagaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCa > 1:5948560/1‑93 (MQ=37)
gaagaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCa > 1:2559963/1‑93 (MQ=37)
gaagaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCa > 2:1368550/1‑93 (MQ=37)
gaagaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCa < 1:1979743/93‑1 (MQ=37)
gaagaaaaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCa < 2:2653594/93‑1 (MQ=25)
agaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGAGGGGGAACt > 1:2187502/1‑93 (MQ=21)
gaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTg < 2:1066711/93‑1 (MQ=37)
gaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTg > 1:5093298/1‑93 (MQ=37)
aagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGa < 2:4326266/93‑1 (MQ=37)
agaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGaa > 1:5003438/1‑93 (MQ=37)
gaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAg > 1:2769966/1‑93 (MQ=37)
gaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAg > 2:3367620/1‑93 (MQ=37)
aaaaaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGc > 2:4633481/1‑93 (MQ=37)
aaaaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGcc > 2:1478134/1‑93 (MQ=37)
aaaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCt < 1:3844354/93‑1 (MQ=37)
aaaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCt < 1:5197371/93‑1 (MQ=37)
aaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTg > 1:5863849/1‑93 (MQ=37)
atatGGGGTATTGAGGTTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGa < 2:922524/93‑1 (MQ=25)
atatGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGa < 2:2213820/93‑1 (MQ=37)
atatGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGa > 2:3486981/1‑93 (MQ=37)
atatGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGa < 2:5683985/93‑1 (MQ=37)
atatGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGa < 2:5770373/93‑1 (MQ=37)
tatGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGAt < 2:2143598/93‑1 (MQ=37)
tatGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGAt > 2:889439/1‑93 (MQ=25)
atGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATg < 1:2315482/93‑1 (MQ=37)
gggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGa < 1:5799723/93‑1 (MQ=25)
ggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATTCGGCGATGGTGCACTGAAGCCTGATGCGAc > 1:6010017/1‑93 (MQ=37)
tATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGc < 2:3665711/93‑1 (MQ=25)
tATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGc < 1:2292581/93‑1 (MQ=25)
aTTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGTCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCt > 1:3393995/1‑93 (MQ=37)
aTTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCt > 2:652480/1‑93 (MQ=25)
ttGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCtt > 1:5027595/1‑93 (MQ=25)
gAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAc > 1:2610983/1‑93 (MQ=25)
aGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGGCGCTTAcc > 2:1729376/1‑93 (MQ=25)
aGGGTTGCTATGCCTGATGCCGATTCGCAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAcc < 2:3188534/93‑1 (MQ=25)
gggTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACcg > 1:5548483/1‑93 (MQ=25)
gggTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACcg < 1:5304021/93‑1 (MQ=25)
gggTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACcg < 2:4716399/93‑1 (MQ=25)
ggTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACcgc < 2:3892427/93‑1 (MQ=25)
gCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCt > 2:5333745/1‑93 (MQ=25)
gCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCt < 1:1119789/93‑1 (MQ=25)
cTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCtt > 2:2511419/1‑93 (MQ=25)
cTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGGGGACTGAAGCCTGATGCGACGCTTACCGCGTCtt > 2:2050710/1‑93 (MQ=21)
tATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTa < 2:2946127/93‑1 (MQ=25)
tATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTa < 2:395377/93‑1 (MQ=25)
aTGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTAt < 1:3875924/93‑1 (MQ=25)
tGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTAta > 1:2444448/1‑92 (MQ=21)
tGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATc > 2:1929226/1‑93 (MQ=21)
tGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATc < 1:2942012/93‑1 (MQ=21)
tGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATc > 1:3997230/1‑93 (MQ=21)
gCCTGATGCCGAGTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCa < 2:2315965/93‑1 (MQ=21)
ccTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCAt < 2:3341465/93‑1 (MQ=21)
cggATGCCGATTCGTAGGCCGGATAGGGCCCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATg < 2:5400959/91‑1 (MQ=21)
tGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGc > 2:5068921/1‑93 (MQ=21)
tGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGc > 2:164363/1‑93 (MQ=21)
tGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGc > 1:494594/1‑93 (MQ=21)
gATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGcc > 1:5383526/1‑93 (MQ=21)
gATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGcc > 1:1319019/1‑93 (MQ=21)
gCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTAc > 1:1513131/1‑93 (MQ=21)
ccGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACt < 2:5142678/93‑1 (MQ=21)
cGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTg > 2:5014663/1‑93 (MQ=21)
cGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTg > 2:6099945/1‑93 (MQ=21)
gATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTgg > 1:4549430/1‑93 (MQ=21)
ttCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGa > 1:4801759/1‑93 (MQ=18)
ttCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGa > 2:2812861/1‑93 (MQ=21)
ttCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGa > 1:344514/1‑93 (MQ=21)
tCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAg < 1:4319691/93‑1 (MQ=18)
tCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGAAGCTTACCGCGTCTTATCATGCCTACTGGGAg < 1:5322635/93‑1 (MQ=18)
cGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGc < 2:2467891/93‑1 (MQ=21)
gTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCa < 2:5597037/93‑1 (MQ=21)
tAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCAc > 1:3149510/1‑93 (MQ=21)
aGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACg > 1:358110/1‑93 (MQ=21)
ggCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGc < 2:2747813/93‑1 (MQ=21)
cGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCttt < 2:746899/93‑1 (MQ=21)
cGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCttt > 1:1071275/1‑93 (MQ=21)
ggATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTa > 1:876491/1‑93 (MQ=21)
ggATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTa < 1:4399585/93‑1 (MQ=21)
gATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTac > 2:5658756/1‑93 (MQ=21)
gATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTac > 1:2141035/1‑93 (MQ=21)
gATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTac > 1:1462835/1‑93 (MQ=21)
aGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCg < 1:1808251/93‑1 (MQ=25)
aGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCg > 2:3635787/1‑93 (MQ=25)
|
ATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCG‑G‑CGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCG > NC_000913/4448449‑4448623
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CG‑‑‑‑GCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCAT > NC_000913/4448448‑4448634
|
GATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CG < SRR4302532.1303598/94‑1 (MQ=60)
GATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CG > SRR4302532.527052/1‑94 (MQ=60)
TACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGcg > SRR4302532.3979906/1‑92 (MQ=60)
CGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGcgccg > SRR4302532.3546039/1‑89 (MQ=60)
CGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGcgccg > SRR4302532.3747972/1‑89 (MQ=60)
GCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGcgccgc > SRR4302532.6055452/1‑88 (MQ=60)
GCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGcgccgc > SRR4302532.5829776/1‑88 (MQ=60)
CAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGcgccgca > SRR4302532.1785439/1‑87 (MQ=60)
CAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGcgccgca > SRR4302532.1295291/1‑87 (MQ=60)
AAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGcgccgcat > SRR4302532.4104305/1‑86 (MQ=60)
AAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGcgccgcatcc > SRR4302532.128718/1‑84 (MQ=60)
AAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGcgccgcatcc < SRR4302532.6161648/94‑11 (MQ=60)
AAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGcgccgcatcc < SRR4302532.1750956/94‑11 (MQ=60)
AGAAGAATTAGAGAAGAAGAAAAATATGGGTTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCG < SRR4302532.2672208/94‑1 (MQ=60)
AGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCG > SRR4302532.5443366/1‑94 (MQ=60)
AGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCG > SRR4302532.1646436/1‑94 (MQ=60)
AGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCG > SRR4302532.1290855/1‑94 (MQ=60)
AGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCG > SRR4302532.4169603/1‑94 (MQ=60)
AAGAATTAGAGAAGAAGAAAAATATGGGGGATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGC > SRR4302532.3849911/1‑94 (MQ=60)
AGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCG < SRR4302532.6194665/94‑1 (MQ=60)
AGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCG < SRR4302532.5008409/94‑1 (MQ=60)
AATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGAT < SRR4302532.3895395/94‑1 (MQ=60)
AATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGAT < SRR4302532.618000/94‑1 (MQ=60)
AATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGAT < SRR4302532.617750/94‑1 (MQ=60)
AATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGcgccgaatccggcgag > SRR4302532.5173542/1‑78 (MQ=60)
AATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGGTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑C‑‑‑‑‑GCGCCGAATCCGGCGAT > SRR4302532.5173543/1‑94 (MQ=60)
ATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATG > SRR4302532.4386995/1‑94 (MQ=60)
ATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATG > SRR4302532.2233862/1‑94 (MQ=60)
AGGGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTG > SRR4302532.3165234/1‑94 (MQ=60)
AGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTG > SRR4302532.2504147/1‑94 (MQ=60)
AGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTG > SRR4302532.3130643/1‑94 (MQ=60)
AGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTG < SRR4302532.5848294/94‑1 (MQ=60)
GAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGC > SRR4302532.122418/1‑94 (MQ=60)
AGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCA > SRR4302532.6154367/1‑94 (MQ=60)
AGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCA > SRR4302532.2645359/1‑94 (MQ=60)
GAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCAC < SRR4302532.2045510/94‑1 (MQ=60)
GAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCAC < SRR4302532.5182508/94‑1 (MQ=60)
AAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACT > SRR4302532.1424977/1‑94 (MQ=60)
AAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACT > SRR4302532.126816/1‑94 (MQ=60)
AAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACT < SRR4302532.1152569/94‑1 (MQ=60)
AAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CGcgccgcatccggcgagggggaact > SRR4302532.2260464/1‑70 (MQ=60)
AGAAGAAAAATGTGGGTTATTGAGGGTTGCTATGCCTGATGCCTATTGGTAGGCCGGATAGG‑‑GCACT‑‑CGCCCCGCGC‑‑‑‑‑CCGGCGATGGTGCACTG < SRR4302532.165674/94‑1 (MQ=38)
AGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTG > SRR4302532.5303710/1‑94 (MQ=60)
AGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTG > SRR4302532.5268443/1‑94 (MQ=60)
AAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAA < SRR4302532.4338805/94‑1 (MQ=60)
AAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAA > SRR4302532.5174941/1‑94 (MQ=60)
AGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAG > SRR4302532.2862969/1‑94 (MQ=60)
AAAAAAATAGGGGGTATTGGGGTTTCCTATGCCTGATGCCGATTCGTAGGCCGGAAAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAG < SRR4302532.5856491/94‑1 (MQ=38)
AAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTG < SRR4302532.3974158/94‑1 (MQ=60)
AAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTG < SRR4302532.5376537/94‑1 (MQ=60)
AAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTG > SRR4302532.6067134/1‑94 (MQ=60)
ATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGAT < SRR4302532.4088742/94‑1 (MQ=60)
ATATGGGGTATGGAGGTTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGAT < SRR4302532.3741991/94‑1 (MQ=60)
TATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATG > SRR4302532.5660136/1‑94 (MQ=60)
ATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGC < SRR4302532.2392555/94‑1 (MQ=60)
ATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGC > SRR4302532.4200011/1‑94 (MQ=60)
GGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATTCGGCGATGGTGCACTGAAGCCTGATGCGAC > SRR4302532.6217560/1‑94 (MQ=60)
GGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGAC < SRR4302532.6001284/94‑1 (MQ=60)
GGGTATTGAGGGTTGCTATGCCTGATGCAGATTCGTAGGCCGGATAAGGCGCGCG‑‑CG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGAC < SRR4302532.3735526/94‑1 (MQ=60)
GGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGCTGGTGCACTGAAGCCTGATGCGACG > SRR4302532.4563974/1‑94 (MQ=60)
GGTATGGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACG < SRR4302532.131808/94‑1 (MQ=60)
GTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGC > SRR4302532.2379764/1‑94 (MQ=60)
TATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑TCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCT > SRR4302532.3507539/1‑94 (MQ=60)
TATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCT < SRR4302532.2368682/94‑1 (MQ=60)
TATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCT < SRR4302532.2968465/94‑1 (MQ=60)
TATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCT > SRR4302532.842052/1‑94 (MQ=60)
TATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCT > SRR4302532.1608621/1‑94 (MQ=60)
TATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCT > SRR4302532.4986431/1‑94 (MQ=60)
ATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGGCTGATGCGACGCTT > SRR4302532.5909258/1‑94 (MQ=60)
ATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTT > SRR4302532.5200042/1‑94 (MQ=60)
TGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAC > SRR4302532.2698325/1‑94 (MQ=60)
GAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACC > SRR4302532.5072024/1‑94 (MQ=60)
gggttggttatgccggatgcgtATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCG < SRR4302532.2594774/72‑1 (MQ=52)
AGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGCTAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGAGCACTGAAGacagaagcgacggctgccg > SRR4302532.306895/1‑75 (MQ=42)
AGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCG > SRR4302532.306896/1‑94 (MQ=60)
AGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCG > SRR4302532.6104546/1‑94 (MQ=60)
AGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCG > SRR4302532.5741066/1‑94 (MQ=60)
GGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGC < SRR4302532.5487354/94‑1 (MQ=60)
GTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGT > SRR4302532.1170267/1‑94 (MQ=60)
TGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCT > SRR4302532.2657515/1‑94 (MQ=60)
TGCGATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCT < SRR4302532.2556113/94‑1 (MQ=60)
GCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTT > SRR4302532.3374201/1‑94 (MQ=60)
GCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTT < SRR4302532.1157184/94‑1 (MQ=60)
CTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTA > SRR4302532.5499173/1‑94 (MQ=60)
TATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTAT < SRR4302532.2429442/94‑1 (MQ=60)
ATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATC > SRR4302532.4131890/1‑94 (MQ=60)
ATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATC < SRR4302532.4006748/94‑1 (MQ=60)
ATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATC > SRR4302532.2525727/1‑94 (MQ=60)
ATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATA > SRR4302532.2525728/1‑94 (MQ=60)
TGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCA < SRR4302532.3010786/94‑1 (MQ=60)
TGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCA < SRR4302532.3039689/94‑1 (MQ=60)
GCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCAT < SRR4302532.689917/94‑1 (MQ=60)
GCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCAT < SRR4302532.5563917/94‑1 (MQ=60)
GCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCAT < SRR4302532.4424616/94‑1 (MQ=60)
GCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCAT > SRR4302532.5920238/1‑94 (MQ=60)
CCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATG > SRR4302532.2463203/1‑94 (MQ=60)
CCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATG > SRR4302532.3658667/1‑94 (MQ=60)
CTGATGGCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGACTGATGCGACGCTTACCGCGTCTTATCATGC > SRR4302532.909458/1‑94 (MQ=60)
CTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGC > SRR4302532.511879/1‑94 (MQ=60)
TGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCC > SRR4302532.1363111/1‑94 (MQ=60)
TGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCC > SRR4302532.4787147/1‑94 (MQ=60)
TGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCC > SRR4302532.5413617/1‑94 (MQ=60)
TGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCC > SRR4302532.5569995/1‑94 (MQ=60)
TGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCAGGCC > SRR4302532.2025329/1‑94 (MQ=60)
agtccgtTTCGTAGGCCGGATAAG‑‑CCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGGGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTA < SRR4302532.1558311/87‑1 (MQ=60)
TGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGGCTAC > SRR4302532.1564235/1‑94 (MQ=60)
TGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTAC > SRR4302532.3922656/1‑94 (MQ=60)
TGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTAC > SRR4302532.1564232/1‑94 (MQ=60)
TGCCGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTAC < SRR4302532.3531437/94‑1 (MQ=60)
CGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGG > SRR4302532.4528375/1‑94 (MQ=60)
CGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGG < SRR4302532.5789763/94‑1 (MQ=60)
CGATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGG > SRR4302532.4704679/1‑94 (MQ=60)
GATTCGTAGGCCGGATAAG‑‑GCTCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGG < SRR4302532.3853277/94‑1 (MQ=60)
GATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGG < SRR4302532.517249/94‑1 (MQ=60)
ATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGA > SRR4302532.356457/1‑94 (MQ=60)
ATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGA < SRR4302532.5365269/94‑1 (MQ=60)
ATTCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGA > SRR4302532.4967134/1‑94 (MQ=60)
TCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGC < SRR4302532.4465695/94‑1 (MQ=60)
TCGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGAAGCTTACCGCGTCTTATCATGCCTACTGGGAGC < SRR4302532.5507040/94‑1 (MQ=60)
CGTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCA > SRR4302532.2271509/1‑94 (MQ=60)
GTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCAC < SRR4302532.2094637/94‑1 (MQ=60)
GTAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCAC > SRR4302532.3254008/1‑94 (MQ=60)
TAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACG > SRR4302532.370517/1‑94 (MQ=60)
TAGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACG > SRR4302532.5106731/1‑94 (MQ=60)
AGGCCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGC > SRR4302532.3799050/1‑94 (MQ=60)
CCGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTT > SRR4302532.1107258/1‑94 (MQ=60)
CGGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTA > SRR4302532.906471/1‑94 (MQ=60)
GGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTAC > SRR4302532.2212538/1‑94 (MQ=60)
GGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTAC < SRR4302532.4549327/94‑1 (MQ=60)
GGATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTAC > SRR4302532.1512129/1‑94 (MQ=60)
GATAAG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACA < SRR4302532.6043752/94‑1 (MQ=60)
AG‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGG < SRR4302532.1868571/94‑1 (MQ=60)
G‑‑GCGCTCGCG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGG > SRR4302532.5948043/1‑94 (MQ=60)
CG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTGCACCGGGGGAAACCA < SRR4302532.4580347/94‑1 (MQ=60)
CG‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCA > SRR4302532.397704/1‑94 (MQ=60)
G‑‑‑‑CCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCAT < SRR4302532.1785214/94‑1 (MQ=60)
|
GATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAG‑‑GCGCT‑‑CG‑‑‑‑GCGC‑‑‑ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCAT > NC_000913/4448448‑4448634
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
