Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,448,541 |
+C |
intergenic (+46/‑92) |
ytfQ → / → ytfR |
putative LACI‑type transcriptional regulator/YtfR |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,448,541 | 1 | . | C | 99.5%
| 593.0
/ ‑6.9
| 197 | intergenic (+46/‑92) | ytfQ/ytfR | putative LACI‑type transcriptional regulator/YtfR |
| Reads supporting (aligned to +/- strand): ref base . (0/0); major base C (131/65); minor base A (1/0); total (132/65) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 219 total aligned reads displayed.
ATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCG‑‑G‑CGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGG > NC_000913/4448449‑4448625
|
aTACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCg > 2:1964592/1‑93 (MQ=255)
tACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTGGGCCGGATAAGGCGCTCgc < 1:6493841/93‑2 (MQ=255)
tACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCgc > 1:1067015/1‑92 (MQ=255)
aagaaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCgg > 1:4654168/1‑93 (MQ=37)
aaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGa < 2:1366139/93‑1 (MQ=37)
aaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGa < 1:2993777/93‑1 (MQ=37)
aaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGa > 2:4818928/1‑93 (MQ=37)
aTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGAt < 2:5792552/93‑1 (MQ=37)
tAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATgg < 2:2869261/93‑1 (MQ=37)
gagaAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTg > 2:5432028/1‑93 (MQ=37)
gaagaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCa > 1:5728057/1‑93 (MQ=37)
gaagaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCa > 2:5574189/1‑93 (MQ=37)
aagaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCAc > 1:111989/1‑93 (MQ=37)
aagaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCAc > 2:5927447/1‑93 (MQ=37)
agaagaaAAATATGGGGTATTGAGGGTTTCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACt < 2:4455814/93‑1 (MQ=25)
agaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACt > 1:3230136/1‑93 (MQ=37)
gaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTg > 1:2700677/1‑93 (MQ=37)
gaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTg < 1:5262300/93‑1 (MQ=37)
gaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTg > 1:1876506/1‑93 (MQ=37)
agaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGaa > 1:4005472/1‑93 (MQ=37)
gaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAg < 2:5325908/93‑1 (MQ=37)
aaaaaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGc < 2:3579652/93‑1 (MQ=37)
aaaaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGcc < 2:4737876/93‑1 (MQ=37)
aaaaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGcc < 2:6229817/93‑1 (MQ=37)
aaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTg < 1:5043128/93‑1 (MQ=37)
atatGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGA‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGa > 2:2788784/1‑93 (MQ=37)
atGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATg > 1:4388087/1‑93 (MQ=25)
tGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGc < 2:6362254/93‑1 (MQ=25)
gggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGa > 2:1893232/1‑93 (MQ=25)
gggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGa > 2:3468006/1‑93 (MQ=25)
ggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGAc > 2:3765228/1‑93 (MQ=25)
gTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGAATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACg < 2:2834810/93‑1 (MQ=25)
tATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGc < 1:5956459/93‑1 (MQ=25)
tATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGc > 1:6080207/1‑93 (MQ=25)
aTTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCt > 1:954150/1‑93 (MQ=25)
ttGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCtt > 1:5859158/1‑93 (MQ=25)
tGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTa < 2:260184/93‑1 (MQ=25)
tGAGGGTTGCTATGCCTGAGGCCGATTCGTAGGCGGGATAAGGCGCTCGCCC‑CGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTa < 1:418916/93‑1 (MQ=25)
tGAGGGTGGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTa < 1:431686/93‑1 (MQ=25)
gAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAc < 1:2482780/93‑1 (MQ=25)
gAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAc > 1:1190281/1‑93 (MQ=25)
gAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAc < 1:6589562/93‑1 (MQ=25)
gAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCC‑GCGATGGTGCACTGAAGCCTGATGCGACGCTTAcc < 2:4608921/93‑1 (MQ=25)
gggTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACcg > 1:4715986/1‑93 (MQ=25)
gggTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACcg > 2:831137/1‑93 (MQ=25)
ggTTGCTATGCCTGATGCCGATCCGTAGGCCGGATAGGGCGCTCGCCC‑CGCACCGGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACcgc < 1:5624711/93‑1 (MQ=25)
gTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACcgcg < 2:5089025/93‑1 (MQ=25)
ttGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGt > 1:538391/1‑93 (MQ=25)
ttGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGt < 2:4015615/93‑1 (MQ=25)
tcTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCt < 2:4372954/92‑1 (MQ=25)
gCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCt > 2:732511/1‑93 (MQ=25)
gCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCt > 2:944746/1‑93 (MQ=25)
gCTATGCCTGATGCCGATTCGTAGGCAGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCt < 1:2596472/93‑1 (MQ=25)
cTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCtt < 2:6278625/93‑1 (MQ=25)
cTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCtt < 1:5442475/93‑1 (MQ=25)
cTAGGCCTGATGCCGATTCGTGGGCCGAATAGGGCGCTCGC‑GCCGCATCCGGCGATGGTCCACTGAAGCCTGATGCGACGCTTACCGCGTCtt < 1:1477784/93‑1 (MQ=21)
tATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTa > 1:4931723/1‑93 (MQ=21)
tATGCCTGATGCCGATTCGGAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTa < 2:389789/93‑1 (MQ=21)
aTGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTAt > 1:279758/1‑93 (MQ=25)
aTGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTAt > 1:1672227/1‑93 (MQ=21)
aTGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTAt > 2:2358884/1‑93 (MQ=25)
aTGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTAt < 2:6016269/93‑1 (MQ=25)
tGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATc > 2:1114309/1‑93 (MQ=21)
tGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATc > 2:1231260/1‑93 (MQ=21)
gCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCa < 2:6073233/93‑1 (MQ=21)
gCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCa > 1:6281152/1‑93 (MQ=21)
ccTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCAt > 1:1545220/1‑93 (MQ=21)
ccTGATGCCGATTCGTAGGCCGCATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCAt < 2:6151006/93‑1 (MQ=21)
ccTGATGCCGATTCGTAGCCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCAt < 1:307313/93‑1 (MQ=21)
cTGATGCCTATGCGTAGGCGGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATg < 1:1649289/93‑1 (MQ=18)
cTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATg > 1:3782990/1‑93 (MQ=21)
tGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGc > 2:4269976/1‑93 (MQ=21)
tGATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGc > 2:1828001/1‑93 (MQ=21)
gATGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGcc > 1:2032337/1‑93 (MQ=21)
tGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTa < 2:3299856/93‑1 (MQ=21)
tGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTa < 2:5659878/93‑1 (MQ=21)
tGCCGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTa < 2:2189393/93‑1 (MQ=21)
cggATTCGTAGGCCGGATAAGGCGCCCGC‑GCCGCATCGGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACt < 1:4535703/91‑1 (MQ=18)
cGATTCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTg > 1:5774863/1‑93 (MQ=21)
ttCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGa > 2:2955456/1‑93 (MQ=21)
tCGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAg > 1:1269727/1‑93 (MQ=21)
cGTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGc > 1:2163547/1‑93 (MQ=21)
gTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCa > 1:2345975/1‑93 (MQ=21)
gTAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCa > 1:4473730/1‑93 (MQ=21)
tAGGCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCAc > 1:3370489/1‑93 (MQ=21)
ggCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGc > 2:1190899/1‑93 (MQ=21)
gCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGGCGCTTACCGCGTCTTATCCTGGCTACTGGGATCACGCt > 2:3146571/1‑93 (MQ=18)
gCCGGATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCt < 1:2884933/93‑1 (MQ=21)
ggATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTa > 1:4081847/1‑93 (MQ=21)
gATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTac < 2:6503851/93‑1 (MQ=25)
gATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTac > 2:3139372/1‑93 (MQ=21)
gATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTac < 2:879395/93‑1 (MQ=25)
gATAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGCCTTATCATGCCTACTGGGAGCACGCtttgc > 2:2312996/1‑91 (MQ=21)
tAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTacac > 1:3674706/1‑93 (MQ=25)
tAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTacac < 1:2289198/93‑1 (MQ=25)
tAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTacac < 2:5535684/93‑1 (MQ=25)
tAAGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTacac < 2:1630599/93‑1 (MQ=25)
aGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCg > 2:6631674/1‑93 (MQ=25)
aGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCg > 1:5153345/1‑93 (MQ=25)
aGGCGCTCGC‑GCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCg > 2:1774848/1‑93 (MQ=25)
|
ATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCG‑‑G‑CGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGG > NC_000913/4448449‑4448625
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CT‑‑CG‑‑GCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCAT > NC_000913/4448449‑4448634
|
ATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CT‑‑CG‑‑C > SRR4302547.1088256/1‑94 (MQ=60)
ATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CT‑‑CG‑‑C > SRR4302547.3439096/1‑94 (MQ=60)
TACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTGGGCCGGATAAGGCG‑‑CT‑‑CGcg < SRR4302547.6629024/94‑3 (MQ=60)
TACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CT‑‑CGcg < SRR4302547.1337253/94‑3 (MQ=60)
CGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CT‑‑CGcgccg > SRR4302547.4586060/1‑89 (MQ=60)
CGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CT‑‑CGcgccg > SRR4302547.2252283/1‑89 (MQ=60)
GCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CT‑‑CGcgccgc > SRR4302547.4023649/1‑88 (MQ=60)
CAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CT‑‑CGcgccgca < SRR4302547.1032581/94‑8 (MQ=60)
CAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CT‑‑CGcgccgca > SRR4302547.895498/1‑87 (MQ=60)
CAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CT‑‑CGcgccgca > SRR4302547.1999911/1‑87 (MQ=60)
AAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CT‑‑CGcgccgcat < SRR4302547.3807796/94‑9 (MQ=60)
AAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CT‑‑CGcgccgcat > SRR4302547.2594736/1‑86 (MQ=60)
AGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCG < SRR4302547.6560546/94‑1 (MQ=60)
AGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CT‑‑CGcgccgcatacg > SRR4302547.5173180/1‑83 (MQ=60)
GAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGG > SRR4302547.5175364/1‑94 (MQ=60)
GAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGG > SRR4302547.4750564/1‑94 (MQ=60)
GAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGG < SRR4302547.120100/94‑1 (MQ=60)
AGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCG > SRR4302547.4719354/1‑94 (MQ=60)
AATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGAT < SRR4302547.3053344/94‑1 (MQ=60)
TTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGG < SRR4302547.1945639/94‑1 (MQ=60)
TAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGT < SRR4302547.2404491/94‑1 (MQ=60)
GAGAGAAGAAGAAAAATATGGGTTATGGAGGGTGTCTATGCCTGATACCAATTCGTAGGCAGGATAAGGCT‑‑CT‑‑C‑‑‑GCGCCCCATCCGGCGATGGT < SRR4302547.2347048/94‑1 (MQ=23)
AGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTG > SRR4302547.3140660/1‑94 (MQ=60)
AGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTG > SRR4302547.4566137/1‑94 (MQ=60)
GAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGC > SRR4302547.1608453/1‑94 (MQ=60)
GAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGC > SRR4302547.1275631/1‑94 (MQ=60)
AGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCA > SRR4302547.5846385/1‑94 (MQ=60)
GAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCAC > SRR4302547.114025/1‑94 (MQ=60)
AAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACT > SRR4302547.5818565/1‑94 (MQ=60)
AAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACT < SRR4302547.2761291/94‑1 (MQ=60)
AAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACT > SRR4302547.3294602/1‑94 (MQ=60)
AGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTG > SRR4302547.1913586/1‑94 (MQ=60)
AGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTG > SRR4302547.2754880/1‑94 (MQ=60)
GAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGA < SRR4302547.5370663/94‑1 (MQ=60)
AAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAA > SRR4302547.4086883/1‑94 (MQ=60)
GGAAAAATATGGGGCATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CT‑‑CGCTCCG‑‑‑CATCCAACGATGGTGCACTGAAG > SRR4302547.4267793/1‑94 (MQ=60)
AGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAG > SRR4302547.3529755/1‑94 (MQ=60)
GAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGC > SRR4302547.6673523/1‑94 (MQ=60)
AAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTG > SRR4302547.118880/1‑94 (MQ=60)
AATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGA < SRR4302547.5147267/94‑1 (MQ=60)
ATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGAT > SRR4302547.2278295/1‑94 (MQ=60)
ATAGGGGGTATTGAGGTTTCCTATGCCTGATGCCGATTCGTAGGCGGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGAT < SRR4302547.5813357/94‑1 (MQ=56)
TATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATG > SRR4302547.4478368/1‑94 (MQ=60)
TATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATG < SRR4302547.826425/94‑1 (MQ=60)
GGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACG > SRR4302547.53469/1‑94 (MQ=60)
GTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGC > SRR4302547.6206325/1‑94 (MQ=60)
TATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCT > SRR4302547.972687/1‑94 (MQ=60)
TATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCT < SRR4302547.6079967/94‑1 (MQ=60)
TATTGAGGGTTGCTATGCCTGATGCCGATTCGCAGGCCGGATAAGGCGCTCT‑‑CG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCT > SRR4302547.3464094/1‑94 (MQ=60)
ATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTT > SRR4302547.5980407/1‑94 (MQ=60)
ATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTT > SRR4302547.1685425/1‑94 (MQ=60)
TGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAC > SRR4302547.4980747/1‑94 (MQ=60)
TGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAC > SRR4302547.1214305/1‑94 (MQ=60)
TGAGGGTTGCTATGCCTGAGGCCGATTCGTAGGCGGGATAAGGCG‑‑CT‑‑CGCCCCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAC < SRR4302547.426683/94‑1 (MQ=60)
TGAGGGTGGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAC < SRR4302547.439684/94‑1 (MQ=60)
GAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACC < SRR4302547.2674992/94‑1 (MQ=60)
GAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACC < SRR4302547.2532957/94‑1 (MQ=60)
GAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACC < SRR4302547.6726734/94‑1 (MQ=60)
AGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCG > SRR4302547.4813652/1‑94 (MQ=60)
GGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCG < SRR4302547.3094341/94‑1 (MQ=60)
GGTTGCTATGCCTGATGCCGATCCGTAGGCCGGATAGGGCG‑‑CT‑‑CGCCCCG‑‑‑CACCGGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCG < SRR4302547.5740781/94‑1 (MQ=60)
GTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGT > SRR4302547.548111/1‑94 (MQ=60)
TTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTC < SRR4302547.5462756/94‑1 (MQ=60)
GCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTT < SRR4302547.5673181/94‑1 (MQ=60)
GCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTT > SRR4302547.5948401/1‑94 (MQ=60)
GCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTT > SRR4302547.2172769/1‑94 (MQ=60)
GCTATGCCTGATGCCGATTCGTAGGCAGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTT < SRR4302547.2648825/94‑1 (MQ=60)
CTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTA > SRR4302547.5033871/1‑94 (MQ=60)
CTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTA > SRR4302547.5033872/1‑94 (MQ=60)
CTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTA > SRR4302547.2282424/1‑94 (MQ=60)
CTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTA > SRR4302547.610579/1‑94 (MQ=60)
CTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTA < SRR4302547.5554935/94‑1 (MQ=60)
CTAGGCCTGATGCCGATTCGTGGGCCGAATAGGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTCCACTGAAGCCTGATGCGACGCTTACCGCGTCTTA < SRR4302547.1507300/94‑1 (MQ=52)
TATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTAT > SRR4302547.284974/1‑94 (MQ=60)
TATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTAT > SRR4302547.1705170/1‑94 (MQ=60)
TGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCA > SRR4302547.6411653/1‑94 (MQ=60)
GCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCAT > SRR4302547.1575983/1‑94 (MQ=60)
CCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATG > SRR4302547.4333713/1‑94 (MQ=60)
CCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATG > SRR4302547.3860124/1‑94 (MQ=60)
CCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATG < SRR4302547.777092/94‑1 (MQ=60)
CCTGATGCCGATTCGTAGCCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATG < SRR4302547.313038/94‑1 (MQ=60)
CTGATGCCTATGCGTAGGCGGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGC < SRR4302547.1681849/94‑1 (MQ=60)
TGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCC > SRR4302547.2072822/1‑94 (MQ=60)
TGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCC < SRR4302547.3754574/94‑1 (MQ=60)
GATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCT < SRR4302547.1641731/94‑1 (MQ=60)
ATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTA > SRR4302547.1851658/1‑94 (MQ=60)
ATGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTA > SRR4302547.6006445/1‑94 (MQ=60)
TGCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTAC > SRR4302547.6523368/1‑94 (MQ=60)
GCCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACT > SRR4302547.54998/1‑94 (MQ=60)
CGGATTCGTAGGCCGGATAAGGCGCCCG‑‑CG‑‑CCG‑‑‑CATCGGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTG < SRR4302547.4629440/94‑1 (MQ=60)
CCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTG < SRR4302547.4368821/94‑1 (MQ=60)
CCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTG > SRR4302547.5894306/1‑94 (MQ=60)
CCGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTG > SRR4302547.2383896/1‑94 (MQ=60)
CGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGG > SRR4302547.3346853/1‑94 (MQ=60)
CGATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGG > SRR4302547.1524360/1‑94 (MQ=60)
GATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGG > SRR4302547.4758147/1‑94 (MQ=60)
ATTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGA > SRR4302547.4572965/1‑94 (MQ=60)
TTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAG > SRR4302547.1295294/1‑94 (MQ=60)
TTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAG > SRR4302547.4157539/1‑94 (MQ=60)
TTCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAG > SRR4302547.2893713/1‑94 (MQ=60)
TCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGC > SRR4302547.2206805/1‑94 (MQ=60)
TCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGC > SRR4302547.4758820/1‑94 (MQ=60)
TCGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGC > SRR4302547.5379744/1‑94 (MQ=60)
CGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCA > SRR4302547.2393525/1‑94 (MQ=60)
CGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCA > SRR4302547.4566161/1‑94 (MQ=60)
CGTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCA < SRR4302547.6056039/94‑1 (MQ=60)
GTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCAC < SRR4302547.2634507/94‑1 (MQ=60)
GTAGGCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCAC > SRR4302547.3438937/1‑94 (MQ=60)
GCCGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTT < SRR4302547.2942510/94‑1 (MQ=60)
CGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTA > SRR4302547.4048894/1‑94 (MQ=60)
CGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTA < SRR4302547.2814906/94‑1 (MQ=60)
CGGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTA > SRR4302547.4164808/1‑94 (MQ=60)
GGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTAC > SRR4302547.1137645/1‑94 (MQ=60)
GGATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTAC > SRR4302547.4444490/1‑94 (MQ=60)
ATAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACAC > SRR4302547.3749669/1‑94 (MQ=60)
TAAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACC < SRR4302547.2335562/94‑1 (MQ=60)
AAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCG > SRR4302547.6339740/1‑94 (MQ=60)
AAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCG > SRR4302547.5892114/1‑94 (MQ=60)
AAGGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCG > SRR4302547.5259473/1‑94 (MQ=60)
GGCG‑‑CTCGCG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGG < SRR4302547.748969/94‑1 (MQ=60)
CG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCA > SRR4302547.5260844/1‑94 (MQ=60)
CG‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCA > SRR4302547.4880251/1‑94 (MQ=60)
G‑‑CCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCAT > SRR4302547.5097626/1‑94 (MQ=60)
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ATACCGCAAAAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCG‑‑CT‑‑CG‑‑GCG‑‑‑CATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCAT > NC_000913/4448449‑4448634
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
