Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,474,826 |
+A |
intergenic (+1/+44) |
yjgL → / ← argI |
hypothetical protein/ornithine carbamoyltransferase 1 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,474,823 | 1 | . | A | 98.9%
| 678.1
/ ‑0.9
| 185 | coding (1849/1851 nt) | yjgL | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (2/0); new base A (135/47); total (137/48) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01 |
Only 100 of 206 total aligned reads displayed.
TAATGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCAT‑AA‑ATAATGTGATGCCGGGATGGTTTCCGCATCTTATAGCGATCAGATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTAT > NC_000913/4474732‑4474910
|
tAATGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCat‑a > 2:342496/1‑93 (MQ=255)
tAATGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCat‑a > 1:3419042/1‑93 (MQ=255)
aaTGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCat‑aa > 2:5951169/1‑93 (MQ=255)
tGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCat‑aa‑aa > 2:1565955/1‑92 (MQ=255)
gAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGCGTGGAGGAATAGACCTATCACTACat‑aa‑aat > 2:5420820/1‑91 (MQ=255)
aaCAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGCAGAATAGACCTATCACTGCat‑aa‑aata > 2:6033515/1‑90 (MQ=255)
aaCAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCat‑aa‑aata > 2:5015168/1‑90 (MQ=255)
aCAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCat‑aa‑aataa > 2:4675667/1‑89 (MQ=255)
aGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAAtg > 1:45386/1‑93 (MQ=255)
gCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAAtgt > 1:2355491/1‑93 (MQ=255)
cGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAAtgtg > 1:2825353/1‑93 (MQ=255)
gTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGa > 1:594960/1‑93 (MQ=255)
gTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGa < 1:4755129/93‑1 (MQ=255)
gTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGa < 2:2938951/93‑1 (MQ=255)
gTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGa > 1:3234041/1‑93 (MQ=255)
gTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGa > 1:1722121/1‑93 (MQ=255)
gTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGa > 2:5898847/1‑93 (MQ=255)
tttAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGAt > 2:4765403/1‑93 (MQ=255)
tttAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGAt > 1:2250184/1‑93 (MQ=255)
taaataaaCTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGc > 1:100725/1‑93 (MQ=255)
aaataaaCTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGcc < 1:6134878/93‑1 (MQ=255)
aataaaCTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCg > 1:2982064/1‑93 (MQ=255)
ataaaCTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCgg > 1:5563144/1‑93 (MQ=255)
ataaaCTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGAGGAAGAATAGAACTATCACTGCATAAA‑ATAATGTGATGCCgg > 1:3165079/1‑93 (MQ=255)
taaaCTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCggg > 2:3995772/1‑93 (MQ=255)
taaaCTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGCGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCggg > 2:4121345/1‑93 (MQ=255)
aaaCTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGa < 2:4341809/93‑1 (MQ=255)
aaaCTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGa > 2:4198923/1‑93 (MQ=255)
aaCTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGAt > 1:3932139/1‑93 (MQ=255)
tAAATCCACCGGAGAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGt < 1:3123003/93‑1 (MQ=255)
tAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGt > 2:5066301/1‑93 (MQ=255)
aaaTCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGtt > 2:2493677/1‑93 (MQ=255)
aaTCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGttt > 1:2338699/1‑93 (MQ=255)
aaTCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGttt < 2:5853518/93‑1 (MQ=255)
tCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgt > 1:5504509‑M1/1‑91 (MQ=255)
ccACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgta < 1:330918‑M1/93‑4 (MQ=255)
cACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtat > 2:1787278‑M1/1‑89 (MQ=255)
ggAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGGTTgtatttcc > 1:5642346‑M1/1‑85 (MQ=255)
gAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttccc > 2:5327009‑M1/1‑84 (MQ=255)
aaaaTTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccg > 2:898866‑M1/1‑83 (MQ=255)
aCGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctt < 1:356423‑M1/93‑18 (MQ=255)
aCGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCAT‑AACATAATGTGATGCCGGGATGGTTTgtatttcccggcatctt > 2:4304981‑M1/1‑76 (MQ=255)
tataGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttat > 2:1728596‑M1/1‑73 (MQ=255)
ataGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttata > 1:5422106‑M1/1‑72 (MQ=255)
ataGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttata > 2:1809059‑M1/1‑72 (MQ=255)
ataGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttccccgcatctttata < 2:6049234‑M1/93‑22 (MQ=255)
taGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatag > 2:1169834‑M1/1‑71 (MQ=255)
taGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatag > 2:3944705‑M1/1‑71 (MQ=255)
cAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcga < 2:3812306‑M1/93‑26 (MQ=255)
aaTAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgat > 1:2342827‑M1/1‑67 (MQ=255)
aaTAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgat > 2:3648206‑M1/1‑67 (MQ=255)
aaTAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgat > 2:5531806‑M1/1‑67 (MQ=255)
aTAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgata > 2:4169251‑M1/1‑66 (MQ=255)
aTAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgata > 2:5083436‑M1/1‑66 (MQ=255)
tAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatag > 2:4252231‑M1/1‑65 (MQ=255)
tAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatag > 1:2996833‑M1/1‑65 (MQ=255)
tAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatag > 2:4898934‑M1/1‑65 (MQ=255)
tAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatag > 1:3624455‑M1/1‑65 (MQ=255)
aaCACTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaa > 1:858954‑M1/1‑62 (MQ=255)
acacTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaat > 2:1997794‑M1/1‑61 (MQ=255)
acacTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaat > 2:858132‑M1/1‑61 (MQ=255)
acTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaatta < 2:4513392‑M1/93‑35 (MQ=255)
acTTTGGGGGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaatta > 1:750361‑M1/1‑59 (MQ=255)
cTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattat < 1:4638897‑M1/93‑36 (MQ=255)
cTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattat > 1:976056‑M1/1‑58 (MQ=255)
cTTTGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattat > 1:1019782‑M1/1‑58 (MQ=255)
cTTTGGGAGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattat > 1:3787086‑M1/1‑58 (MQ=255)
tttGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatt > 1:5695039‑M1/1‑57 (MQ=255)
ttGGGTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattattt < 2:3095212‑M1/93‑38 (MQ=255)
gggTGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttac < 2:3044809‑M1/93‑40 (MQ=255)
tGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactga > 1:711958‑M1/1‑51 (MQ=255)
tGGAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactga > 1:4952552‑M1/1‑51 (MQ=255)
ggAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgag > 1:4435566‑M1/1‑50 (MQ=255)
ggAAGAATAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttagagcgatagcaattatttactgag > 1:4301212‑M1/1‑50 (MQ=255)
gaagaaTAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagc < 2:2799261‑M1/93‑45 (MQ=255)
gaagaaTAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagc < 2:3855829‑M1/93‑45 (MQ=255)
gaagaaTAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagc > 2:3338939‑M1/1‑49 (MQ=255)
aagaaTAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcg > 1:4488460‑M1/1‑48 (MQ=255)
aaTAGACCTATCACTGCATGAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcg < 2:3738197‑M1/93‑49 (MQ=255)
aTAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgc > 2:4216875‑M1/1‑44 (MQ=255)
aTAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgc > 2:1299029‑M1/1‑44 (MQ=255)
tAGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttaatgagcgtcgcg > 1:1089295‑M1/1‑43 (MQ=255)
aGACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcga > 2:432283‑M1/1‑42 (MQ=255)
gACCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgac > 1:3883577‑M1/1‑41 (MQ=255)
aCCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgacc > 2:3684646‑M1/1‑40 (MQ=255)
aCCTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgacc > 1:1890799‑M1/1‑40 (MQ=255)
ccTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgacca < 2:3178786‑M1/93‑55 (MQ=255)
cTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccat > 1:411691‑M1/1‑38 (MQ=255)
cTATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccat < 2:3562327‑M1/93‑56 (MQ=255)
tATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatc > 1:3846635‑M1/1‑37 (MQ=255)
tATCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagagtcgcgcccatc > 2:700911‑M1/1‑37 (MQ=255)
aTCACTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatca < 2:219833‑M1/93‑58 (MQ=255)
aCTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccg > 2:3462560‑M1/1‑33 (MQ=255)
aCTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccg > 1:5918916‑M1/1‑33 (MQ=255)
cTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgc > 1:2966180‑M1/1‑32 (MQ=255)
cTGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgc < 2:5683864‑M1/93‑62 (MQ=255)
tGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagtgtcgcgaccatcaccgct > 1:5051003‑M1/1‑31 (MQ=255)
tGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgct > 2:2015308‑M1/1‑31 (MQ=255)
tGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgct > 1:1605777‑M1/1‑31 (MQ=255)
tGCATAAA‑ATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcacagct > 2:2280588‑M1/1‑31 (MQ=255)
|
TAATGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCAT‑AA‑ATAATGTGATGCCGGGATGGTTTCCGCATCTTATAGCGATCAGATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTAT > NC_000913/4474732‑4474910
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AATGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCAT‑AAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTT‑‑‑‑‑‑‑‑CC‑‑GCATC‑TTATAGCGAT‑‑CAGATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTA > NC_000913/4474733‑4474909
|
AATGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCAT‑AAA > SRR4302532.87028/1‑94 (MQ=60)
ATGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCAT‑AAAA > SRR4302532.2329231/1‑94 (MQ=60)
ATGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGCGGAAGAATAGACCTATCACTGCAT‑AAAA > SRR4302532.5935395/1‑94 (MQ=60)
GAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCAT‑AAAata > SRR4302532.3087344/1‑91 (MQ=60)
AACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTACCACTGCATAAAATAA > SRR4302532.5679188/1‑94 (MQ=60)
CAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATG > SRR4302532.46990/1‑94 (MQ=60)
AGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGT > SRR4302532.2434085/1‑94 (MQ=60)
GCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTG > SRR4302532.2919866/1‑94 (MQ=60)
GCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCAT‑AAAatcatgtt > SRR4302532.3322935/1‑86 (MQ=60)
CGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGA > SRR4302532.615733/1‑94 (MQ=60)
CGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGA > SRR4302532.1780125/1‑94 (MQ=60)
CGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGA > SRR4302532.3341397/1‑94 (MQ=60)
GTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGAT < SRR4302532.4917771/94‑1 (MQ=60)
GTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGAT > SRR4302532.2324887/1‑94 (MQ=60)
GTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGAT > SRR4302532.4654932/1‑94 (MQ=60)
GTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGAG > SRR4302532.4904573/1‑94 (MQ=60)
TTTAAATAAACTAAATCCACCGGACAATTTACGTATAGCAATAGAACACTTTGTGTGGAAGAATAGACCTATCACTGAATAAAATAATGTGATG > SRR4302532.3334984/1‑94 (MQ=60)
TTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGC > SRR4302532.3511775/1‑94 (MQ=60)
TTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGC > SRR4302532.104225/1‑94 (MQ=60)
TTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGC > SRR4302532.5814559/1‑94 (MQ=60)
TTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGC > SRR4302532.104224/1‑94 (MQ=60)
TAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCC < SRR4302532.3952698/94‑1 (MQ=60)
AAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCG > SRR4302532.3080684/1‑94 (MQ=60)
AAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCG < SRR4302532.6346517/94‑1 (MQ=60)
AATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGG > SRR4302532.5756307/1‑94 (MQ=60)
AATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGAGGAAGAATAGAACTATCACTGCATAAAATAATGTGATGCCGG > SRR4302532.3270190/1‑94 (MQ=60)
ATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGG > SRR4302532.2422060/1‑94 (MQ=60)
ATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGG > SRR4302532.4943734/1‑94 (MQ=60)
ATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGG > SRR4302532.3400565/1‑94 (MQ=60)
AAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGAT > SRR4302532.4064643/1‑94 (MQ=60)
AACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATG > SRR4302532.4603524/1‑94 (MQ=60)
CTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑T > SRR4302532.4354077/1‑94 (MQ=60)
TAAATCCACCGGAGAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TT < SRR4302532.3226650/94‑1 (MQ=60)
AAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTT > SRR4302532.2416623/1‑94 (MQ=60)
AAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTT > SRR4302532.5252318/1‑94 (MQ=60)
AATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTT‑‑‑‑‑‑‑‑G > SRR4302532.5139672/1‑94 (MQ=60)
ATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgt > SRR4302532.5695440/1‑92 (MQ=60)
CCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtat < SRR4302532.342400/94‑5 (MQ=60)
CGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGgttgtatttcc > SRR4302532.5838489/1‑83 (MQ=60)
GGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttccc < SRR4302532.6206757/94‑10 (MQ=60)
TACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctt > SRR4302532.2417039/1‑77 (MQ=60)
TACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctt < SRR4302532.3905610/94‑18 (MQ=60)
ACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatcttt < SRR4302532.368759/94‑19 (MQ=60)
ACGTATAGCAATAGAACACTTTGGGGGGAAGAATAGACCTATCACTGCAT‑AAAataattgaatgccgggttggtttttatttcccggcttctta > SRR4302532.3026546/1‑53 (MQ=60)
CGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatcttta > SRR4302532.690323/1‑75 (MQ=60)
GTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttat < SRR4302532.2227612/94‑21 (MQ=60)
GTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttat > SRR4302532.3072243/1‑74 (MQ=60)
TATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttata > SRR4302532.3375199/1‑73 (MQ=60)
TATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttata > SRR4302532.5610034/1‑73 (MQ=60)
AGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcg < SRR4302532.404569/94‑25 (MQ=60)
AGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcg > SRR4302532.5354271/1‑70 (MQ=60)
CAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgat > SRR4302532.2420923/1‑68 (MQ=60)
CAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgat > SRR4302532.587008/1‑68 (MQ=60)
AATAGAACACTTTGGTTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgata < SRR4302532.569948/94‑28 (MQ=60)
AATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgata > SRR4302532.302219/1‑67 (MQ=60)
ATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgatag > SRR4302532.3745910/1‑66 (MQ=60)
ATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgatag > SRR4302532.3095838/1‑66 (MQ=60)
TAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgatagc < SRR4302532.3697052/94‑30 (MQ=60)
AGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgatagca < SRR4302532.767378/94‑31 (MQ=60)
GAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgatagcaa > SRR4302532.888459/1‑63 (MQ=60)
CACTTTGGGTGGCAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgatagcaatta > SRR4302532.3110050/1‑60 (MQ=60)
CACTTTGGGGGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgatagcaatta > SRR4302532.776063/1‑60 (MQ=60)
ACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgatagcaattat > SRR4302532.1009376/1‑59 (MQ=60)
ACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgatagcaattat > SRR4302532.955919/1‑59 (MQ=60)
ACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgatagcaattat > SRR4302532.1054369/1‑59 (MQ=60)
ACTTTGGGAGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgatagcaattat > SRR4302532.3914842/1‑59 (MQ=60)
CTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgatagcaattatt > SRR4302532.5893718/1‑58 (MQ=60)
CTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgatagcaattatt < SRR4302532.4797059/94‑37 (MQ=60)
TTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgatagcaattattta < SRR4302532.1835833/94‑39 (MQ=60)
TTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgatagcaattattta > SRR4302532.2787242/1‑56 (MQ=60)
TGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgatagcaattatttac > SRR4302532.1058673/1‑55 (MQ=60)
TGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgatagcaattatttac > SRR4302532.4754148/1‑55 (MQ=60)
GTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgatagcaattatttactga > SRR4302532.736282/1‑52 (MQ=60)
GTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgatagcaattatttactga > SRR4302532.5122476/1‑52 (MQ=60)
TGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgatagcaattatttactgag > SRR4302532.4586697/1‑51 (MQ=60)
TGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgatagcaattatttactgag > SRR4302532.1500608/1‑51 (MQ=60)
TGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttagagcgatagcaattatttactgag > SRR4302532.4446583/1‑51 (MQ=60)
GAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgatagcaattatttactgagcg > SRR4302532.4641651/1‑49 (MQ=60)
GAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgatagcaattatttactgagcg > SRR4302532.4498490/1‑49 (MQ=60)
AAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgatagcaattatttactgagcgt > SRR4302532.1677662/1‑48 (MQ=60)
AAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgatagcaattatttactgagcgt > SRR4302532.3570305/1‑48 (MQ=60)
ATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTgtatttcccggcatctttatagcgatagcaattatttaatgagcgtcgcg > SRR4302532.1125752/1‑44 (MQ=60)
AGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGAC > SRR4302532.4014645/1‑94 (MQ=23)
AGACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGAC > SRR4302532.4100447/1‑94 (MQ=23)
GACCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACC > SRR4302532.1953496/1‑94 (MQ=23)
CCTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCAT > SRR4302532.426031/1‑94 (MQ=23)
CTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATC > SRR4302532.3976516/1‑94 (MQ=23)
CTATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATC > SRR4302532.3245698/1‑94 (MQ=23)
TATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCA > SRR4302532.4011337/1‑94 (MQ=23)
ATCACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCAC > SRR4302532.6137062/1‑94 (MQ=23)
CACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCG > SRR4302532.6123896/1‑94 (MQ=23)
actgcaaaAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGGATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACtgt > SRR4302532.4496907/9‑91 (MQ=19)
ACTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGC > SRR4302532.3064407/1‑94 (MQ=23)
CTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGTGTCGCGACCATCACCGCT > SRR4302532.5224326/1‑94 (MQ=16)
CTGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCT > SRR4302532.1660139/1‑94 (MQ=25)
TGCATAAAATAATGTGATGCCGGGATGGGTTGTATTT‑‑‑‑‑‑‑‑CCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTT > SRR4302532.2794607/1‑94 (MQ=25)
TGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTT > SRR4302532.2794608/1‑94 (MQ=26)
TGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTT > SRR4302532.682850/1‑94 (MQ=26)
TGCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTT > SRR4302532.5114521/1‑94 (MQ=26)
GCATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑AATATTTACTGAGCGTCGCGACCATCACCGCTTT < SRR4302532.4430193/94‑1 (MQ=19)
CATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTG < SRR4302532.4235256/94‑1 (MQ=30)
CATAAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTG > SRR4302532.1398693/1‑94 (MQ=30)
ataAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGA > SRR4302532.5896239/4‑94 (MQ=33)
ataAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGA > SRR4302532.1944579/4‑94 (MQ=33)
ataAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGA > SRR4302532.5490290/4‑94 (MQ=33)
taAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGAT < SRR4302532.4030567/92‑1 (MQ=34)
taAAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGAT < SRR4302532.4030566/92‑1 (MQ=34)
AATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGT > SRR4302532.1677806/1‑94 (MQ=38)
AATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGT > SRR4302532.1497675/1‑94 (MQ=38)
ATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTTGTATTTCCCG‑‑GCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTA > SRR4302532.4814104/1‑94 (MQ=38)
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AATGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCAT‑AAATAATGTGATGCCGGGATGG‑‑‑‑‑‑TTT‑‑‑‑‑‑‑‑CC‑‑GCATC‑TTATAGCGAT‑‑CAGATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTA > NC_000913/4474733‑4474909
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
