Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,474,826 |
+A |
intergenic (+1/+44) |
yjgL → / ← argI |
hypothetical protein/ornithine carbamoyltransferase 1 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,474,823 | 1 | . | A | 99.5%
| 734.6
/ ‑4.9
| 192 | *617K (TAA→AAA) | yjgL | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base . (1/0); major base A (121/69); minor base C (1/0); total (123/69) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 203 total aligned reads displayed.
TTAATGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCAT‑AAATAATGTGATGCCGGGATGGTTTCCGCATCTTATAGCGATCAGATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTAT > NC_000913/4474731‑4474910
|
ttAATGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCat < 2:1138737/93‑1 (MQ=255)
aaTGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCat‑aa > 2:5724938/1‑93 (MQ=255)
aCAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCat‑aaaataa > 1:4966393/1‑89 (MQ=255)
aGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAAtg > 2:1649397/1‑93 (MQ=255)
cGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAAtgtg > 2:1327593/1‑93 (MQ=255)
gTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGa > 2:5260245/1‑93 (MQ=255)
gTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGa > 2:517581/1‑93 (MQ=255)
gTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGa > 2:2272855/1‑93 (MQ=255)
gTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGa > 1:2711521/1‑93 (MQ=255)
tttAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGAt > 2:3626169/1‑93 (MQ=255)
taaataaaCTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGc < 1:1133059/93‑1 (MQ=255)
taaataaaCTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGc < 1:5541059/93‑1 (MQ=255)
ataaaCTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCgg > 2:2202743/1‑93 (MQ=255)
aaCTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGAt > 1:3217460/1‑93 (MQ=255)
aaCTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGAt > 1:6133612/1‑93 (MQ=255)
aCTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATg > 1:2404922/1‑93 (MQ=255)
tAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGt > 2:1416606/1‑93 (MQ=255)
aaaTCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGtt < 1:3886221/93‑1 (MQ=255)
aaaTCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGtt < 1:6568318/93‑1 (MQ=255)
aTCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTg < 1:5349522‑M1/93‑2 (MQ=255)
cACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtat < 2:2836155‑M1/93‑5 (MQ=255)
aCCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatt > 1:1942719‑M1/1‑88 (MQ=255)
aCCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTGgtatt > 2:2458105‑M1/1‑88 (MQ=255)
cGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttc > 1:1165131‑M1/1‑86 (MQ=255)
cGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttc > 2:3154548‑M1/1‑86 (MQ=255)
ggAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcc > 2:5099378‑M1/1‑85 (MQ=255)
ggAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcc < 1:68753‑M1/93‑9 (MQ=255)
gAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttccg > 1:4677507‑M1/1‑84 (MQ=255)
gAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttccc < 1:158812‑M1/93‑10 (MQ=255)
gAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttccc > 2:4562305‑M1/1‑84 (MQ=255)
aaaaTTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccg < 1:3641537‑M1/93‑11 (MQ=255)
aaaaTTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccg < 1:4551905‑M1/93‑11 (MQ=255)
aaaTTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATATGATGCCGGGATGGTTTgtatttcccgg > 2:592722‑M1/1‑82 (MQ=255)
aaTTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggc > 1:4955981‑M1/1‑81 (MQ=255)
aaTTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggc > 1:712652‑M1/1‑81 (MQ=255)
aaTTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggc > 1:5947005‑M1/1‑81 (MQ=255)
aTTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggca > 2:3842210‑M1/1‑80 (MQ=255)
tttACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcat > 2:1734849‑M1/1‑79 (MQ=255)
tACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatct > 2:5548076‑M1/1‑77 (MQ=255)
aCGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctt > 2:2696955‑M1/1‑76 (MQ=255)
cGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatcttt > 1:5698435‑M1/1‑75 (MQ=255)
gTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatcttta > 2:4465661‑M1/1‑74 (MQ=255)
gTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatcttta < 1:3106203‑M1/93‑20 (MQ=255)
gTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatcttta < 1:4126139‑M1/93‑20 (MQ=255)
gTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatcttta > 1:5758545‑M1/1‑74 (MQ=255)
tataGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttat < 1:2329251‑M1/93‑21 (MQ=255)
ataGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttata < 1:6430987‑M1/93‑22 (MQ=255)
aGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatatc < 2:3286819‑M1/93‑24 (MQ=255)
gCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcg < 1:2130077‑M1/93‑25 (MQ=255)
aaTAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgat > 1:2369783‑M1/1‑67 (MQ=255)
aaTAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgat < 2:487109‑M1/93‑27 (MQ=255)
aTAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgata < 1:1103351‑M1/93‑28 (MQ=255)
aTAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgata > 2:2062158‑M1/1‑66 (MQ=255)
tAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatag > 2:6065255‑M1/1‑65 (MQ=255)
tAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatag > 1:1245829‑M1/1‑65 (MQ=255)
aGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatcgcgatagc < 1:6468093‑M1/93‑30 (MQ=255)
aGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagc < 1:3801134‑M1/93‑30 (MQ=255)
aGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagc < 1:2010479‑M1/93‑30 (MQ=255)
gAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagca > 2:700465‑M1/1‑63 (MQ=255)
aaCACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaa > 2:1559795‑M1/1‑62 (MQ=255)
acacTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaat > 1:2887758‑M1/1‑61 (MQ=255)
cacTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaatt < 1:4292587‑M1/93‑34 (MQ=255)
cacTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaatt < 1:535913‑M1/93‑34 (MQ=255)
acTTTGGGTGGAAGAATAGACCTATCACTGCATCAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaatta > 2:6106261‑M1/1‑59 (MQ=255)
acTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaatta < 2:4662162‑M1/93‑35 (MQ=255)
cTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattat > 1:1735553‑M1/1‑58 (MQ=255)
cTTTGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattat > 1:6195660‑M1/1‑58 (MQ=255)
tGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattattta < 2:351398‑M1/93‑39 (MQ=255)
tGGGTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattattta > 2:3997096‑M1/1‑55 (MQ=255)
gggTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttac < 2:1848419‑M1/93‑40 (MQ=255)
gggTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttac < 2:1082099‑M1/93‑40 (MQ=255)
ggTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttact > 1:4472437‑M1/1‑53 (MQ=255)
ggTGGAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttact > 2:3584891‑M1/1‑53 (MQ=255)
ggAAGAATAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgag > 1:3670581‑M1/1‑50 (MQ=255)
gaagaaTAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagc > 1:1690875‑M1/1‑49 (MQ=255)
gaagaaTAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagc < 2:3759696‑M1/93‑45 (MQ=255)
aagaaTAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcg > 2:6301648‑M1/1‑48 (MQ=255)
aagaaTAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcg > 1:3487432‑M1/1‑48 (MQ=255)
agaaTAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgt > 1:4467252‑M1/1‑47 (MQ=255)
gaaTAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtc < 2:4098179‑M1/93‑48 (MQ=255)
aaTAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcg < 2:71031‑M1/93‑49 (MQ=255)
aaTAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcg > 1:3530430‑M1/1‑45 (MQ=255)
aaTAGACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcg > 1:2671255‑M1/1‑45 (MQ=255)
gACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgac < 2:2094703‑M1/93‑53 (MQ=255)
gACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgac < 2:1495756‑M1/93‑53 (MQ=255)
gACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgac > 1:5889026‑M1/1‑41 (MQ=255)
gACCTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgac > 1:5098136‑M1/1‑41 (MQ=255)
ccTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgacca < 2:4218645‑M1/93‑55 (MQ=255)
ccTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgacca > 1:944002‑M1/1‑39 (MQ=255)
ccTATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgacca < 1:5433183‑M1/93‑55 (MQ=255)
tATCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccata > 1:2080441‑M1/1‑37 (MQ=255)
tCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcac > 2:4360695‑M1/1‑35 (MQ=255)
tCACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcac > 2:5511674‑M1/1‑35 (MQ=255)
cACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcacc < 2:4254008‑M1/93‑60 (MQ=255)
cACTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcacc < 1:5185376‑M1/93‑60 (MQ=255)
cTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgc > 1:4521874‑M1/1‑32 (MQ=255)
cTGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgc > 1:1403829‑M1/1‑32 (MQ=255)
tGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgct < 2:5402646‑M1/93‑63 (MQ=255)
tGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgct < 2:6521698‑M1/93‑63 (MQ=255)
tGCATAAAATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgct > 1:3369667‑M1/1‑31 (MQ=255)
|
TTAATGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCAT‑AAATAATGTGATGCCGGGATGGTTTCCGCATCTTATAGCGATCAGATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTAT > NC_000913/4474731‑4474910
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCAT‑A‑AATAATGTGATGCCGGGATGGTTT‑‑‑‑‑‑‑‑CCGCATC‑TTATAGCGAT‑‑CAGATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGT > NC_000913/4474734‑4474908
|
ATGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCAT‑A‑AAA > SRR4302547.5587621/1‑94 (MQ=60)
AACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAA > SRR4302547.5069165/1‑94 (MQ=60)
CAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATG < SRR4302547.2048875/94‑1 (MQ=60)
CAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATG > SRR4302547.3278677/1‑94 (MQ=60)
AGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGT > SRR4302547.3479112/1‑94 (MQ=60)
GCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTG < SRR4302547.5282/94‑1 (MQ=60)
CGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGA > SRR4302547.2765956/1‑94 (MQ=60)
TTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATG < SRR4302547.711313/94‑1 (MQ=60)
TTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGGAGAATAGACCTATCACTGCATAA‑AATAATGTGATGC > SRR4302547.1713343/1‑94 (MQ=60)
TAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCC < SRR4302547.5655417/94‑1 (MQ=60)
TAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCC < SRR4302547.5079373/94‑1 (MQ=60)
TAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCC < SRR4302547.1155934/94‑1 (MQ=60)
ATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGG > SRR4302547.2137064/1‑94 (MQ=60)
AAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGAT > SRR4302547.3281636/1‑94 (MQ=60)
AAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGAT > SRR4302547.6260844/1‑94 (MQ=60)
AAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGAT > SRR4302547.6716472/1‑94 (MQ=60)
AAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGAT > SRR4302547.275828/1‑94 (MQ=60)
AACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATG > SRR4302547.6305502/1‑94 (MQ=60)
AACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATG > SRR4302547.2453618/1‑94 (MQ=60)
TAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTT < SRR4302547.2109941/94‑1 (MQ=60)
AAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTT < SRR4302547.3965271/94‑1 (MQ=60)
AAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTT < SRR4302547.6705075/94‑1 (MQ=60)
ATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgt > SRR4302547.4590095/1‑92 (MQ=60)
ATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgt < SRR4302547.5459826/94‑3 (MQ=60)
CACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatt > SRR4302547.1981233/1‑89 (MQ=60)
CACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatt > SRR4302547.5539397/1‑89 (MQ=60)
CACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatt > SRR4302547.3402177/1‑89 (MQ=60)
CACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCAT‑ATAATAATGTGATGCCGGGATGGTTTgtatt > SRR4302547.6668918/1‑89 (MQ=60)
ACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGgttgtattt > SRR4302547.1186405/1‑85 (MQ=60)
CCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttc > SRR4302547.1188701/1‑87 (MQ=60)
CGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcc > SRR4302547.5263855/1‑86 (MQ=60)
GGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttccg > SRR4302547.4774398/1‑85 (MQ=60)
GGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttccc < SRR4302547.70041/94‑10 (MQ=60)
GGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATCTGATGCCGGGATGGTTTgtatttccc > SRR4302547.5468473/1‑85 (MQ=60)
GAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccg < SRR4302547.6027172/94‑11 (MQ=60)
GAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccg < SRR4302547.161717/94‑11 (MQ=60)
AAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccgg > SRR4302547.3817346/1‑83 (MQ=60)
AAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccgg < SRR4302547.4646055/94‑12 (MQ=60)
AAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccgg < SRR4302547.3715812/94‑12 (MQ=60)
AAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggc > SRR4302547.6070328/1‑82 (MQ=60)
AAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggc > SRR4302547.725837/1‑82 (MQ=60)
AAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggc > SRR4302547.5058561/1‑82 (MQ=60)
TTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatct < SRR4302547.616414/94‑17 (MQ=60)
TACGTATAGCAATAGAACACTTTGGGTGGAAGAATCGACCTATCACTGCATAA‑AATAATGTGATGCGGGGATGGTTTgtatttccagccatctt > SRR4302547.1140300/1‑77 (MQ=60)
TACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctt < SRR4302547.4309786/94‑18 (MQ=60)
ACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatcttt > SRR4302547.5816133/1‑76 (MQ=60)
CGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatcttta > SRR4302547.5877617/1‑75 (MQ=60)
GTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttat < SRR4302547.3075352/94‑21 (MQ=60)
GTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttat < SRR4302547.4210059/94‑21 (MQ=60)
GTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttat < SRR4302547.3167762/94‑21 (MQ=60)
TATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttata < SRR4302547.2376466/94‑22 (MQ=60)
ATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatag < SRR4302547.6565042/94‑23 (MQ=60)
TAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagc > SRR4302547.1598354/1‑71 (MQ=60)
TAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagc > SRR4302547.5057223/1‑71 (MQ=60)
GCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcga < SRR4302547.2172520/94‑26 (MQ=60)
CAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgat > SRR4302547.2417817/1‑68 (MQ=60)
CAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgat > SRR4302547.3902721/1‑68 (MQ=60)
CAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgat > SRR4302547.5841031/1‑68 (MQ=60)
AATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgata > SRR4302547.1194231/1‑67 (MQ=60)
ATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatag > SRR4302547.2448870/1‑66 (MQ=60)
ATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatag > SRR4302547.1270973/1‑66 (MQ=60)
ATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatag < SRR4302547.2039625/94‑29 (MQ=60)
ATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatag < SRR4302547.1125536/94‑29 (MQ=60)
AGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatcgcgatagca < SRR4302547.6602794/94‑31 (MQ=60)
AGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagca < SRR4302547.3656485/94‑31 (MQ=60)
AGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagca > SRR4302547.4632860/1‑64 (MQ=60)
AGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagca < SRR4302547.2050486/94‑31 (MQ=60)
AGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagca < SRR4302547.3878611/94‑31 (MQ=60)
AACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaat > SRR4302547.2945374/1‑62 (MQ=60)
AACACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaat > SRR4302547.5916758/1‑62 (MQ=60)
AACACTTTGGGGGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaat > SRR4302547.6431926/1‑62 (MQ=60)
ACACTTTGGGGGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaatt > SRR4302547.5065698/1‑61 (MQ=60)
CACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaatta < SRR4302547.4380818/94‑35 (MQ=60)
CACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaatta > SRR4302547.355704/1‑60 (MQ=60)
CACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaatta < SRR4302547.545597/94‑35 (MQ=60)
CACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaatta > SRR4302547.405586/1‑60 (MQ=60)
ACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattat > SRR4302547.6324276/1‑59 (MQ=60)
ACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattat > SRR4302547.4410185/1‑59 (MQ=60)
ACTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattat > SRR4302547.1769650/1‑59 (MQ=60)
CTTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatt > SRR4302547.3741625/1‑58 (MQ=60)
TTTGGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattattt < SRR4302547.5762620/94‑38 (MQ=60)
GGGTGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttact > SRR4302547.4564849/1‑54 (MQ=60)
GGGCGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttact > SRR4302547.2392459/1‑54 (MQ=60)
TGGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgag > SRR4302547.3745448/1‑51 (MQ=60)
GGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagc > SRR4302547.827805/1‑50 (MQ=60)
GGAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagc > SRR4302547.1724139/1‑50 (MQ=60)
GAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcg > SRR4302547.3558590/1‑49 (MQ=60)
GAAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcg < SRR4302547.4732600/94‑46 (MQ=60)
AAGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgt > SRR4302547.4559560/1‑48 (MQ=60)
AGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtc > SRR4302547.2346865/1‑47 (MQ=60)
AGAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtc > SRR4302547.2657807/1‑47 (MQ=60)
GAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCG > SRR4302547.3602510/1‑94 (MQ=30)
GAATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCG > SRR4302547.2724918/1‑94 (MQ=30)
ATAGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCG < SRR4302547.1968575/94‑1 (MQ=26)
AGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGAC > SRR4302547.1384358/1‑94 (MQ=23)
AGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGAC > SRR4302547.5203257/1‑94 (MQ=23)
AGACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGAC > SRR4302547.6010941/1‑94 (MQ=23)
ACCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCA > SRR4302547.962300/1‑94 (MQ=23)
CCTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCAT < SRR4302547.5545493/94‑1 (MQ=23)
CTATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATA > SRR4302547.2121929/1‑94 (MQ=21)
ATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCAC > SRR4302547.4563808/1‑94 (MQ=23)
ATCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCAC > SRR4302547.2794413/1‑94 (MQ=23)
TCACTGCATAA‑AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACC > SRR4302547.1736114/1‑94 (MQ=23)
CACTGCATAA‑AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCG < SRR4302547.5292096/94‑1 (MQ=23)
ACTGCATAA‑AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGC > SRR4302547.1431912/1‑94 (MQ=23)
ACTGCATAA‑AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGC > SRR4302547.4615315/1‑94 (MQ=23)
CTGCATAA‑AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCT < SRR4302547.5020789/94‑1 (MQ=25)
CTGCATAA‑AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCT > SRR4302547.3438102/1‑94 (MQ=25)
CATAA‑AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTG > SRR4302547.5683741/1‑94 (MQ=30)
ataA‑AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGA > SRR4302547.1888056/4‑94 (MQ=33)
taA‑AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGAT < SRR4302547.5468146/92‑1 (MQ=34)
A‑A‑AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATA < SRR4302547.665297/94‑1 (MQ=36)
A‑AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAG > SRR4302547.4063796/1‑94 (MQ=38)
A‑AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAG < SRR4302547.2280010/94‑1 (MQ=38)
AATAATGTGATGCCGGGATGGTTTGTATTTCCCGGCATCTTTATAGCGATAGCA‑ATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGT < SRR4302547.5844499/94‑1 (MQ=38)
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ATGAACAGCGTTTAAATAAACTAAATCCACCGGAAAATTTACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCAT‑A‑AATAATGTGATGCCGGGATGGTTT‑‑‑‑‑‑‑‑CCGCATC‑TTATAGCGAT‑‑CAGATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGT > NC_000913/4474734‑4474908
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
