Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,637,851 |
C→T |
V9I (GTT→ATT) |
arcA ← |
ArcA |
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,637,851 | 0 | C | T | 95.7%
| 999.8
/ 17.5
| 279 | V9I (GTT→ATT) | arcA | ArcA |
| Reads supporting (aligned to +/- strand): ref base C (8/4); new base T (159/108); total (167/112) |
| Fisher's exact test for biased strand distribution p-value = 7.68e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.61e-01 |
Only 100 of 284 total aligned reads displayed.
CATTTCCGCGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATG > NC_000913/4637759‑4637940
|
tttCCGCGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGa > 1:3336060/1‑93 (MQ=255)
tttCCGCGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGa > 2:6007594/1‑93 (MQ=255)
tttCCGCGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGa < 2:1660565/93‑1 (MQ=255)
tttCCGCGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGa > 2:6098905/1‑93 (MQ=255)
ccGCGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATaa > 1:947602/1‑93 (MQ=255)
cgcgCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAg < 1:450418/93‑1 (MQ=255)
ccATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATTCTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAAtg < 2:3563594/93‑1 (MQ=255)
ccATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAAtg < 2:1170480/93‑1 (MQ=255)
ccATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAAtg > 1:3682116/1‑93 (MQ=255)
aTCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAAtgtg > 1:5857239/1‑93 (MQ=255)
tCTGTCTCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGc < 1:1837688/93‑1 (MQ=255)
tCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGc > 1:4516837/1‑93 (MQ=255)
tCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGc > 2:2572663/1‑93 (MQ=255)
cTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCATTGATAAGAATGTGCg > 2:5821354/1‑93 (MQ=255)
cTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCg < 2:1566843/93‑1 (MQ=255)
cTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCg < 1:6121229/93‑1 (MQ=255)
gTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCggg > 1:5997199/1‑93 (MQ=255)
gTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCggg < 2:818602/93‑1 (MQ=255)
tCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCgggg > 2:2999675/1‑93 (MQ=255)
tCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCgggg > 1:4352580/1‑93 (MQ=255)
gCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTc < 1:2231831/93‑1 (MQ=255)
gCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTc > 2:1279790/1‑93 (MQ=255)
gCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTc < 2:5515534/93‑1 (MQ=255)
gCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTc < 1:4189387/93‑1 (MQ=255)
cTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGGTGCGTGTTACCAACTCGTCTTTAACGATATGAATGTGCGGGGTcg > 2:5458595/1‑92 (MQ=255)
ttCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTg > 1:4157680/1‑93 (MQ=255)
cGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCa < 1:3307164/93‑1 (MQ=255)
aaaaCATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATg < 1:3148766/93‑1 (MQ=255)
aaaCATCATAGCATTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTGCCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGt < 1:2623586/93‑1 (MQ=255)
aaCATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGtt > 2:338699/1‑93 (MQ=255)
aCATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGttt < 2:1544163/93‑1 (MQ=255)
atAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTAc < 2:4574005/93‑1 (MQ=255)
atAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTAc > 2:4991083/1‑93 (MQ=255)
tAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTAcc > 2:3810802/1‑93 (MQ=255)
tAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTAcc > 1:1061459/1‑93 (MQ=255)
tAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTAcc < 1:2363063/93‑1 (MQ=255)
gCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTa > 1:6095011/1‑93 (MQ=255)
cTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTaaa > 1:5719394/1‑93 (MQ=255)
ttCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAAt > 1:4435005/1‑93 (MQ=255)
tCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAAtt < 2:5800466/93‑1 (MQ=255)
tCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAAtt < 1:4983922/93‑1 (MQ=255)
tCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAAtt > 1:1509330/1‑93 (MQ=255)
ccGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTg < 2:4102422/93‑1 (MQ=255)
cGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGc < 2:1386143/93‑1 (MQ=255)
cGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGc > 2:4590440/1‑93 (MQ=255)
cTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCa > 1:2656620/1‑93 (MQ=255)
cTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCa < 2:3951874/93‑1 (MQ=255)
ttCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCaa > 1:4619897/1‑93 (MQ=255)
ttCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCaa > 2:2672164/1‑93 (MQ=255)
gAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTa > 2:4196177/1‑93 (MQ=255)
gAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTa > 1:2531955/1‑93 (MQ=255)
aaaaTACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTaa > 2:3727988/1‑93 (MQ=255)
aaaaTACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTaa > 1:5165514/1‑93 (MQ=255)
aaaaTACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTaa > 1:2487790/1‑93 (MQ=255)
aaaTACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTTTGCATGTTTGCTATCTAAATTGCCTACTaaa > 1:5491747/1‑93 (MQ=255)
aaTACTTTTCAACGTGTTGCGTGTTTCCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAAt < 2:5279977/93‑1 (MQ=255)
aaTACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAAt < 2:1483591/93‑1 (MQ=255)
aaTACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAAt < 2:5572678/93‑1 (MQ=255)
aTACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATc > 1:3895056/1‑93 (MQ=255)
aCTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGa > 1:1978059/1‑93 (MQ=255)
aCTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGa > 1:5350285/1‑93 (MQ=255)
cTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGaa < 1:1258729/93‑1 (MQ=255)
ttttCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGaaa > 1:5153442/1‑93 (MQ=255)
ttttCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGaaa < 1:1453418/93‑1 (MQ=255)
ttttCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGaaa > 2:4429055/1‑93 (MQ=255)
tCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAg < 2:4292134/93‑1 (MQ=255)
tCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAg < 1:4077952/93‑1 (MQ=255)
aaCGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGa < 1:2323305/93‑1 (MQ=255)
aCGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGaa > 2:1437643/1‑93 (MQ=255)
cGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAg > 1:4773898/1‑93 (MQ=255)
gtgtTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGt < 1:1734866/93‑1 (MQ=255)
tgtTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTa > 1:1363285/1‑93 (MQ=255)
gtTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTAc > 1:5421598/1‑93 (MQ=255)
tagCGTGTTACCAGCTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACa < 2:1089425/91‑1 (MQ=255)
tgtTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAgc > 2:1989775/1‑92 (MQ=255)
tgtTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGt > 2:2359586/1‑93 (MQ=255)
gtTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTc > 1:2165517/1‑93 (MQ=255)
ttACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTcc > 2:4896202/1‑93 (MQ=255)
tccAACTTGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCt < 2:4497825/92‑1 (MQ=255)
aCCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCt < 1:1174060/93‑1 (MQ=255)
ccAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTg > 1:1005528/1‑93 (MQ=255)
ccAACTCGTCTTCAATGATAAGAATGTGCGGGCTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAACGTCCCTg > 1:5024708/1‑93 (MQ=255)
cAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGa < 2:1586118/93‑1 (MQ=255)
cAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGa > 1:290711/1‑93 (MQ=255)
aCTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGAcc < 1:2800267/93‑1 (MQ=255)
cTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGAcct > 2:3203720/1‑93 (MQ=255)
cTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGAcct > 1:423980/1‑93 (MQ=255)
tCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGAcctg > 2:473376/1‑93 (MQ=255)
tCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGAcctg > 2:3640299/1‑93 (MQ=255)
cGTCTTCAATGATAAGAATGTGCGGGTTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGAcctgc < 1:2705085/93‑1 (MQ=255)
gTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGAcctgcc > 1:1107642/1‑93 (MQ=255)
tCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCACCTAAATCGAAACAGGAAGTACAAAAGTCCCTGAcctgcct > 1:307471/1‑93 (MQ=255)
tCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGAcctgcct > 2:483332/1‑93 (MQ=255)
tCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGAcctgcct > 2:2748859/1‑93 (MQ=255)
cTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGAcctgcctg < 2:3312472/93‑1 (MQ=255)
ttCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGa < 1:3623495/93‑1 (MQ=255)
ttCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGa > 2:2195682/1‑93 (MQ=255)
tCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGat < 2:645501/93‑1 (MQ=255)
cAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGatg > 1:482329/1‑93 (MQ=255)
cAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGatg < 1:1537311/93‑1 (MQ=255)
|
CATTTCCGCGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATG > NC_000913/4637759‑4637940
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCATTTCCGCGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATG > NC_000913/4637758‑4637944
|
GCATTTCCGCGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAAT < SRR4302532.2333795/94‑1 (MQ=60)
GCATTTCCGCGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAAT < SRR4302532.4979893/94‑1 (MQ=60)
GCATTTCCGCGCCATCTGTCGCTACGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAAT < SRR4302532.3602021/94‑1 (MQ=60)
ATTTCCGCGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGTGTGTTACCAACTCGTCTTCAATGA > SRR4302532.5544508/1‑94 (MQ=60)
ATTTCCGCGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGA > SRR4302532.3447366/1‑94 (MQ=60)
ATTTCCGCGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGA > SRR4302532.1197463/1‑94 (MQ=60)
TCCGCGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAA > SRR4302532.980014/1‑94 (MQ=60)
CGCGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGA < SRR4302532.466063/94‑1 (MQ=60)
GCGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAA < SRR4302532.1825905/94‑1 (MQ=60)
CGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAAT > SRR4302532.6221940/1‑94 (MQ=60)
CGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAAT < SRR4302532.4144764/94‑1 (MQ=60)
GCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATG > SRR4302532.3805791/1‑94 (MQ=60)
GCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATG < SRR4302532.2370235/94‑1 (MQ=60)
GCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATG > SRR4302532.2430291/1‑94 (MQ=60)
CCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGT > SRR4302532.6043281/1‑94 (MQ=60)
CCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGT > SRR4302532.3223347/1‑94 (MQ=60)
CATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTG > SRR4302532.1173965/1‑94 (MQ=60)
CATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTG > SRR4302532.6060342/1‑94 (MQ=60)
ATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGC > SRR4302532.4671040/1‑94 (MQ=60)
TCTGTCTCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCG < SRR4302532.1898760/94‑1 (MQ=60)
TCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCG < SRR4302532.4571591/94‑1 (MQ=60)
TCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCG > SRR4302532.3387806/1‑94 (MQ=60)
CTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGG < SRR4302532.6332474/94‑1 (MQ=60)
CTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGG > SRR4302532.810545/1‑94 (MQ=60)
TGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGG > SRR4302532.1602004/1‑94 (MQ=60)
TGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGG > SRR4302532.6204357/1‑94 (MQ=60)
GTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGG > SRR4302532.4499802/1‑94 (MQ=60)
GCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCT < SRR4302532.4329947/94‑1 (MQ=60)
GCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCT < SRR4302532.2305894/94‑1 (MQ=60)
CTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTG > SRR4302532.4297134/1‑94 (MQ=60)
CTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTG > SRR4302532.3873667/1‑94 (MQ=60)
TTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGC > SRR4302532.664961/1‑94 (MQ=60)
TCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCA < SRR4302532.5227478/94‑1 (MQ=60)
CGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCAT < SRR4302532.3417329/94‑1 (MQ=60)
GAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATG > SRR4302532.3802327/1‑94 (MQ=60)
GAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATG > SRR4302532.4837634/1‑94 (MQ=60)
AAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGT < SRR4302532.3253234/94‑1 (MQ=60)
AAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGT < SRR4302532.2405721/94‑1 (MQ=60)
AAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTT < SRR4302532.237419/94‑1 (MQ=60)
AAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTT < SRR4302532.2711434/94‑1 (MQ=60)
AAACATCATAGCATTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTGCCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTT < SRR4302532.2711433/94‑1 (MQ=60)
ACATCATAGCCTTCCGCTTCGAAAATACTTGTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTG < SRR4302532.155908/94‑1 (MQ=60)
CATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGC < SRR4302532.2816669/94‑1 (MQ=60)
ATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCT > SRR4302532.3723458/1‑94 (MQ=60)
ATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCT < SRR4302532.4666351/94‑1 (MQ=60)
ATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCT > SRR4302532.4682690/1‑94 (MQ=60)
ATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACC > SRR4302532.1097196/1‑94 (MQ=60)
ATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACC < SRR4302532.2290257/94‑1 (MQ=60)
TAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCT < SRR4302532.249130/94‑1 (MQ=60)
TAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCT > SRR4302532.3412527/1‑94 (MQ=60)
TAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCT < SRR4302532.2441884/94‑1 (MQ=60)
TAGCCTTCCGCTTCGAAAATACTCTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCT < SRR4302532.4639620/94‑1 (MQ=60)
AGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTA > SRR4302532.6305403/1‑94 (MQ=60)
AGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTA > SRR4302532.6305402/1‑94 (MQ=60)
GCCTTCCGCCTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAA < SRR4302532.1314523/94‑1 (MQ=60)
CCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAA > SRR4302532.5918630/1‑94 (MQ=60)
CTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAAT < SRR4302532.4975819/94‑1 (MQ=60)
CTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAAT > SRR4302532.4586116/1‑94 (MQ=60)
CTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAAT > SRR4302532.2445978/1‑94 (MQ=60)
CTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAAT < SRR4302532.6314547/94‑1 (MQ=60)
TTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATT < SRR4302532.6098931/94‑1 (MQ=60)
TTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATT > SRR4302532.1974610/1‑94 (MQ=60)
TTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATT > SRR4302532.1560289/1‑94 (MQ=60)
TTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGCCTGCATTTTTGCTACCTACATT > SRR4302532.1560290/1‑94 (MQ=60)
TCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTG > SRR4302532.4355906/1‑94 (MQ=60)
TCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTG < SRR4302532.5154772/94‑1 (MQ=60)
TCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTG < SRR4302532.5154773/94‑1 (MQ=60)
CGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCC > SRR4302532.1264297/1‑94 (MQ=60)
CGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCC > SRR4302532.2771270/1‑94 (MQ=60)
GCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCA > SRR4302532.2745782/1‑94 (MQ=60)
CTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAA > SRR4302532.4777432/1‑94 (MQ=60)
CTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAA > SRR4302532.4278483/1‑94 (MQ=60)
TTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAAC < SRR4302532.2674416/94‑1 (MQ=60)
TTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAAC < SRR4302532.3440793/94‑1 (MQ=60)
TCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACT < SRR4302532.4496499/94‑1 (MQ=60)
CGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTA > SRR4302532.2616430/1‑94 (MQ=60)
GAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAA > SRR4302532.5021987/1‑94 (MQ=60)
GAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAA > SRR4302532.5343349/1‑94 (MQ=60)
GAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAA > SRR4302532.279250/1‑94 (MQ=60)
GAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAA > SRR4302532.2570684/1‑94 (MQ=60)
AAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTTTGCATGTTTGCTATCTAAATTGCCTACTAAA > SRR4302532.5682186/1‑94 (MQ=60)
AAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAAT > SRR4302532.4550518/1‑94 (MQ=60)
AAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAAT > SRR4302532.5369776/1‑94 (MQ=60)
AATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATC > SRR4302532.2798334/1‑94 (MQ=60)
AATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATC > SRR4302532.4026450/1‑94 (MQ=60)
AATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATC > SRR4302532.5796867/1‑94 (MQ=60)
AATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATC < SRR4302532.257502/94‑1 (MQ=60)
ATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCG > SRR4302532.114581/1‑94 (MQ=60)
ATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCG > SRR4302532.114582/1‑94 (MQ=60)
TACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGA > SRR4302532.2043755/1‑94 (MQ=60)
TACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGA > SRR4302532.5535878/1‑94 (MQ=60)
ACTTTTCAACGGGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAA > SRR4302532.147966/1‑94 (MQ=60)
CTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAA < SRR4302532.1300851/94‑1 (MQ=60)
CTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAA > SRR4302532.5330746/1‑94 (MQ=60)
CTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAA > SRR4302532.5330745/1‑94 (MQ=60)
CTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAA > SRR4302532.2683090/1‑94 (MQ=60)
CTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAA > SRR4302532.4303786/1‑94 (MQ=60)
TTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAAC < SRR4302532.1502426/94‑1 (MQ=60)
TCAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGG < SRR4302532.4214886/94‑1 (MQ=60)
CAACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGA > SRR4302532.1462578/1‑94 (MQ=60)
AACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAA < SRR4302532.2400625/94‑1 (MQ=60)
AACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAA > SRR4302532.518903/1‑94 (MQ=60)
ACGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAG > SRR4302532.4938266/1‑94 (MQ=60)
CGTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGT > SRR4302532.3248350/1‑94 (MQ=60)
GTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTA < SRR4302532.4251262/94‑1 (MQ=60)
GTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTA < SRR4302532.1793250/94‑1 (MQ=60)
GTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTA > SRR4302532.4375935/1‑94 (MQ=60)
GTGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTA > SRR4302532.1408952/1‑94 (MQ=60)
TGTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTAC > SRR4302532.5609508/1‑94 (MQ=60)
GTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACA > SRR4302532.4128225/1‑94 (MQ=60)
GTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACA > SRR4302532.3107991/1‑94 (MQ=60)
GTTGCGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACA > SRR4302532.4660498/1‑94 (MQ=60)
GCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAA > SRR4302532.3785393/1‑94 (MQ=60)
CGTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAG < SRR4302532.4450347/94‑1 (MQ=60)
GTGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGT > SRR4302532.4942744/1‑94 (MQ=60)
TGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAGTCGAAACAGGAAGTACAAAAGTC > SRR4302532.4642182/1‑94 (MQ=60)
TGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGTAACAGGAAGTACAAAAGTC > SRR4302532.5569958/1‑94 (MQ=60)
TGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTC < SRR4302532.1666740/94‑1 (MQ=60)
TGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTC > SRR4302532.6122642/1‑94 (MQ=60)
TGTTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTC > SRR4302532.2237944/1‑94 (MQ=60)
TTACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCC > SRR4302532.5020796/1‑94 (MQ=60)
TACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCT < SRR4302532.5400555/94‑1 (MQ=60)
ACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTG < SRR4302532.1213293/94‑1 (MQ=60)
ACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTG > SRR4302532.1039743/1‑94 (MQ=60)
ACCAACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTG > SRR4302532.5197189/1‑94 (MQ=60)
ACCAACTCGTCTTCAATGATAAGAATGTGCGGGCTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAACGTCCCTG > SRR4302532.5197046/1‑94 (MQ=60)
CCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGA > SRR4302532.300731/1‑94 (MQ=60)
CAAATCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGAC > SRR4302532.5696995/1‑94 (MQ=60)
ACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCT < SRR4302532.294866/94‑1 (MQ=60)
ACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCT < SRR4302532.1061693/94‑1 (MQ=60)
ACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCT > SRR4302532.438669/1‑94 (MQ=60)
ACTCGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCT < SRR4302532.2894103/94‑1 (MQ=60)
CTCGTCTTCAATGATAAGAATGTGCGGGGTCTTCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTG > SRR4302532.1793874/1‑94 (MQ=60)
CTCGTCTTCAATGATAAGAATGTGCGGGGGCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTG > SRR4302532.2952157/1‑94 (MQ=60)
CGTCTTCAATGATAAGAATGTGCGGGTTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCC < SRR4302532.2796016/94‑1 (MQ=60)
CGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCC > SRR4302532.1144672/1‑94 (MQ=60)
CGTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCC < SRR4302532.2154133/94‑1 (MQ=60)
GTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCACCTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCT > SRR4302532.318129/1‑94 (MQ=60)
GTCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCT > SRR4302532.158809/1‑94 (MQ=60)
TCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAATTACAAAAGTCCCTGACCTGCCTG > SRR4302532.3633504/1‑94 (MQ=60)
TCTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTG > SRR4302532.3152090/1‑94 (MQ=60)
CTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGT > SRR4302532.3909494/1‑94 (MQ=60)
CTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGA > SRR4302532.2576508/1‑94 (MQ=60)
CTTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGA > SRR4302532.2042980/1‑94 (MQ=60)
TTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGAT < SRR4302532.3744887/94‑1 (MQ=60)
TTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGAT > SRR4302532.6013705/1‑94 (MQ=60)
TTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGAT > SRR4302532.5621296/1‑94 (MQ=60)
TTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGAT > SRR4302532.5621295/1‑94 (MQ=60)
TTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGAT > SRR4302532.1285271/1‑94 (MQ=60)
TTCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGAT < SRR4302532.1381130/94‑1 (MQ=60)
TCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATG > SRR4302532.2151784/1‑94 (MQ=60)
TCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATG < SRR4302532.5559422/94‑1 (MQ=60)
TCAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATG > SRR4302532.499157/1‑94 (MQ=60)
CAATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGC < SRR4302532.1589259/94‑1 (MQ=60)
AATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCA < SRR4302532.5882170/94‑1 (MQ=60)
AATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCA > SRR4302532.3291541/1‑94 (MQ=60)
AATGATAAGAATGTGAGGGATCTGCATGTTTGCTACCTACATTGCCAACTAAATCGAAACAGGAAGTACAACAGTCCCTGCCCTGCCAGATGCA < SRR4302532.5649691/94‑1 (MQ=60)
ATGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCAT < SRR4302532.5247352/94‑1 (MQ=60)
TGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATG < SRR4302532.1278259/94‑1 (MQ=60)
TGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATG > SRR4302532.221515/1‑94 (MQ=60)
TGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATG < SRR4302532.926780/94‑1 (MQ=60)
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GCATTTCCGCGCCATCTGTCGCTTCGAAAACATCATAGCCTTCCGCTTCGAAAATACTTTTCAACGTGTTGCGTGTTACCAACTCGTCTTCAACGATAAGAATGTGCGGGGTCTGCATGTTTGCTACCTAAATTGCCAACTAAATCGAAACAGGAAGTACAAAAGTCCCTGACCTGCCTGATGCATG > NC_000913/4637758‑4637944
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |