Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTTCCCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTT  >  NC_000913/1101939‑1102124
                                                                                             |                                                                                            
TTTCCCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTA                                                                                              <  SRR4302532.4660277/94‑1 (MQ=60)
TTTCCCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGCTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTG                                                                                              <  SRR4302532.4452495/94‑1 (MQ=60)
 TTCCCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGG                                                                                             >  SRR4302532.6349130/1‑94 (MQ=60)
   CCCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCA                                                                                           <  SRR4302532.1476747/94‑1 (MQ=60)
   CCCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCA                                                                                           <  SRR4302532.1476746/94‑1 (MQ=60)
    CCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCAT                                                                                          <  SRR4302532.5209249/94‑1 (MQ=60)
    CCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCAT                                                                                          <  SRR4302532.105314/94‑1 (MQ=60)
    CCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCAT                                                                                          <  SRR4302532.3242072/94‑1 (MQ=60)
    CCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCAT                                                                                          >  SRR4302532.2041208/1‑94 (MQ=60)
    CCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCAT                                                                                          >  SRR4302532.5969800/1‑94 (MQ=60)
     CGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATT                                                                                         >  SRR4302532.1428858/1‑94 (MQ=60)
       ATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCG                                                                                       >  SRR4302532.1543276/1‑94 (MQ=60)
       ATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCG                                                                                       <  SRR4302532.3285324/94‑1 (MQ=60)
        TGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGC                                                                                      <  SRR4302532.1198694/94‑1 (MQ=60)
        TGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGC                                                                                      >  SRR4302532.5979220/1‑94 (MQ=60)
         GAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCC                                                                                     <  SRR4302532.3353435/94‑1 (MQ=60)
         GAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCC                                                                                     <  SRR4302532.3302053/94‑1 (MQ=60)
          AGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCG                                                                                    <  SRR4302532.5008092/94‑1 (MQ=60)
            TAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCG                                                                                  <  SRR4302532.3463010/94‑1 (MQ=60)
              AGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCA                                                                                >  SRR4302532.2331103/1‑94 (MQ=60)
               GGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAG                                                                               <  SRR4302532.1511865/94‑1 (MQ=60)
               GGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAG                                                                               <  SRR4302532.3532076/94‑1 (MQ=60)
                GAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATTCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGG                                                                              <  SRR4302532.3256351/94‑1 (MQ=60)
                 AGTGCGGATTCCGTGCTGTTATAACGAAAGTTACCTGAATGCGTAATCAGGGAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGA                                                                             >  SRR4302532.5658889/1‑94 (MQ=60)
                  GGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGAC                                                                            <  SRR4302532.5450297/94‑1 (MQ=60)
                  GGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGAC                                                                            <  SRR4302532.3458440/94‑1 (MQ=60)
                   GGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCGTTCGCCGCGCAGGACG                                                                           <  SRR4302532.5828684/94‑1 (MQ=60)
                   GGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACG                                                                           <  SRR4302532.205516/94‑1 (MQ=60)
                    GCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCCTAAAGTAGCATTCGCCGCGCAGGACGC                                                                          >  SRR4302532.4622237/1‑94 (MQ=60)
                     CTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCC                                                                         >  SRR4302532.444157/1‑94 (MQ=60)
                     CTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAACCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCC                                                                         <  SRR4302532.6036333/94‑1 (MQ=60)
                       GATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTT                                                                       <  SRR4302532.3235207/94‑1 (MQ=60)
                       GATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTT                                                                       <  SRR4302532.4513257/94‑1 (MQ=60)
                       GATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTT                                                                       <  SRR4302532.5790180/94‑1 (MQ=60)
                       GATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTT                                                                       <  SRR4302532.4127504/94‑1 (MQ=60)
                        ATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTG                                                                      >  SRR4302532.1701848/1‑94 (MQ=60)
                          TCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCCGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCTGGACGCCGTGCA                                                                    >  SRR4302532.5673926/1‑94 (MQ=60)
                            CGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAAC                                                                  >  SRR4302532.4084790/1‑94 (MQ=60)
                            CGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAAC                                                                  >  SRR4302532.4084788/1‑94 (MQ=60)
                             GTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACC                                                                 >  SRR4302532.3483159/1‑94 (MQ=60)
                             GTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACC                                                                 >  SRR4302532.2455892/1‑94 (MQ=60)
                              TGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCC                                                                <  SRR4302532.458583/94‑1 (MQ=60)
                              TGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCC                                                                >  SRR4302532.2064720/1‑94 (MQ=60)
                              TGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCC                                                                >  SRR4302532.3430710/1‑94 (MQ=60)
                              TGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCC                                                                >  SRR4302532.2949219/1‑94 (MQ=60)
                                CTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCAT                                                              >  SRR4302532.1889081/1‑94 (MQ=60)
                                CTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCAT                                                              >  SRR4302532.2087333/1‑94 (MQ=60)
                                 TGTTATAACGATAGTTACCTGAATTCGTAATCAGGTAGCTGGCAAGCTTTAGCGTAAAGTAGCATTCGCCGCGCAGGACGCTTTGCAACCCATT                                                             >  SRR4302532.5667418/1‑94 (MQ=60)
                                 TGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAGCCCATT                                                             >  SRR4302532.1101057/1‑94 (MQ=60)
                                 TGCTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATT                                                             >  SRR4302532.2257034/1‑94 (MQ=60)
                                  GTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTG                                                            <  SRR4302532.175400/94‑1 (MQ=60)
                                  GTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTG                                                            >  SRR4302532.991727/1‑94 (MQ=60)
                                    TATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGAC                                                          >  SRR4302532.1352860/1‑94 (MQ=60)
                                    TATAACGATAGTTAACTGAATGCGTAATCGGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTTGCCGCGCAGGACGCCTTGCAACCCATTGAC                                                          >  SRR4302532.1352861/1‑94 (MQ=60)
                                      TAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAA                                                        >  SRR4302532.765682/1‑94 (MQ=60)
                                      TAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAA                                                        >  SRR4302532.668393/1‑94 (MQ=60)
                                       AACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAAC                                                       <  SRR4302532.4983287/94‑1 (MQ=60)
                                       AACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAAC                                                       >  SRR4302532.4245344/1‑94 (MQ=60)
                                        ACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACA                                                      <  SRR4302532.5739055/94‑1 (MQ=60)
                                         CGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACAC                                                     <  SRR4302532.1628570/94‑1 (MQ=60)
                                         CGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACAC                                                     >  SRR4302532.2494920/1‑94 (MQ=60)
                                         CGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACAC                                                     >  SRR4302532.3281240/1‑94 (MQ=60)
                                          GATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACG                                                    <  SRR4302532.3879900/94‑1 (MQ=60)
                                             AGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTC                                                 <  SRR4302532.3019049/94‑1 (MQ=60)
                                             AGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTC                                                 <  SRR4302532.3982854/94‑1 (MQ=60)
                                             AGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTC                                                 >  SRR4302532.5631877/1‑94 (MQ=60)
                                              GTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCT                                                >  SRR4302532.109632/1‑94 (MQ=60)
                                              GTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCT                                                <  SRR4302532.835603/94‑1 (MQ=60)
                                              GTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCT                                                >  SRR4302532.1389132/1‑94 (MQ=60)
                                              GTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCT                                                >  SRR4302532.2400767/1‑94 (MQ=60)
                                              GTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCT                                                >  SRR4302532.1389134/1‑94 (MQ=60)
                                                TACCTGAATGCGTAATCATGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTG                                              <  SRR4302532.2460204/94‑1 (MQ=60)
                                                TACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTG                                              <  SRR4302532.2163613/94‑1 (MQ=60)
                                                TACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTG                                              <  SRR4302532.2163614/94‑1 (MQ=60)
                                                 ACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGA                                             >  SRR4302532.3098615/1‑94 (MQ=60)
                                                  TCTGAATGCTTAATCAGGTAGCCGGCATGCTTTTGCGTTAAGGAGCATTCGTCGTGCAGGTCGCCTTGCAACCCATTGACAACACGCTCTTGAT                                            >  SRR4302532.5656440/1‑94 (MQ=50)
                                                    TGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCC                                          >  SRR4302532.4921259/1‑94 (MQ=60)
                                                     GAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCT                                         >  SRR4302532.2500815/1‑94 (MQ=60)
                                                      AATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTC                                        >  SRR4302532.6129212/1‑94 (MQ=60)
                                                       ATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCC                                       <  SRR4302532.961310/94‑1 (MQ=60)
                                                       ATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCC                                       >  SRR4302532.4793973/1‑94 (MQ=60)
                                                        TGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCA                                      >  SRR4302532.356057/1‑94 (MQ=60)
                                                          CGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATG                                    <  SRR4302532.4455327/94‑1 (MQ=60)
                                                          CGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATG                                    >  SRR4302532.5009923/1‑94 (MQ=60)
                                                          CGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATG                                    >  SRR4302532.1150586/1‑94 (MQ=60)
                                                          CGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATG                                    <  SRR4302532.1464140/94‑1 (MQ=60)
                                                            TAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGA                                  >  SRR4302532.567767/1‑94 (MQ=60)
                                                             AATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAA                                 >  SRR4302532.4925706/1‑94 (MQ=60)
                                                              ATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCGTTGACAACACGTTCTTGATCCTCCATGGAAT                                >  SRR4302532.1963663/1‑94 (MQ=60)
                                                              ATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAAT                                <  SRR4302532.570702/94‑1 (MQ=60)
                                                              ATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAAT                                >  SRR4302532.6008649/1‑94 (MQ=60)
                                                                 AGGTAGTTGGCAAGCTTTTGCATAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAA                             <  SRR4302532.40188/94‑1 (MQ=60)
                                                                 AGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAA                             >  SRR4302532.3511748/1‑94 (MQ=60)
                                                                 AGGTAGCTGGCAAGCTTTTGCGTAAAGTGGCATTAGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAA                             >  SRR4302532.3511749/1‑94 (MQ=60)
                                                                 AGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAA                             >  SRR4302532.4176669/1‑94 (MQ=60)
                                                                    TAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAA                          >  SRR4302532.4676068/1‑94 (MQ=60)
                                                                    TAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAA                          <  SRR4302532.1718920/94‑1 (MQ=60)
                                                                    TAGCTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATCGACAACACGTTCTTGATCCTCCATGGAATAAAAAA                          <  SRR4302532.4107392/94‑1 (MQ=60)
                                                                     AGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAAC                         <  SRR4302532.2116495/94‑1 (MQ=60)
                                                                       CTGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGC                       >  SRR4302532.1914116/1‑94 (MQ=60)
                                                                       CTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGC                       >  SRR4302532.4779387/1‑94 (MQ=60)
                                                                        TGGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCC                      <  SRR4302532.3770010/94‑1 (MQ=60)
                                                                         GGCAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCG                     <  SRR4302532.1360550/94‑1 (MQ=60)
                                                                         GGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCG                     <  SRR4302532.736959/94‑1 (MQ=60)
                                                                           CAAGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTT                   <  SRR4302532.3590081/94‑1 (MQ=60)
                                                                           CAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTT                   >  SRR4302532.64454/1‑94 (MQ=60)
                                                                           CAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTT                   >  SRR4302532.3806909/1‑94 (MQ=60)
                                                                            AAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTG                  >  SRR4302532.2380530/1‑94 (MQ=60)
                                                                             AGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGA                 >  SRR4302532.4176274/1‑94 (MQ=60)
                                                                             AGCTTTTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGA                 >  SRR4302532.4058822/1‑94 (MQ=60)
                                                                              GCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGAT                <  SRR4302532.3190215/94‑1 (MQ=60)
                                                                              GCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGAT                <  SRR4302532.331473/94‑1 (MQ=60)
                                                                               CTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCACCCCATTGACAACACGTTCTTGATCCTCTATGGAGTAAAAAACGGCGTTGATA               >  SRR4302532.1566775/1‑94 (MQ=60)
                                                                               CTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATA               >  SRR4302532.3307127/1‑94 (MQ=60)
                                                                                TTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATAT              >  SRR4302532.1385194/1‑94 (MQ=60)
                                                                                  TTGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGA            <  SRR4302532.1056035/94‑1 (MQ=60)
                                                                                  TTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGA            >  SRR4302532.4484180/1‑94 (MQ=60)
                                                                                   TGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAG           <  SRR4302532.5832330/94‑1 (MQ=60)
                                                                                   TGCGTAAAGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAG           <  SRR4302532.6107474/94‑1 (MQ=60)
                                                                                   TGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAG           <  SRR4302532.2772678/94‑1 (MQ=60)
                                                                                       TAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCTATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCA       <  SRR4302532.4340807/94‑1 (MQ=60)
                                                                                          AGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTT    <  SRR4302532.2254799/94‑1 (MQ=60)
                                                                                          AGTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTT    <  SRR4302532.2254800/94‑1 (MQ=60)
                                                                                           GTGGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTT   >  SRR4302532.3391469/1‑94 (MQ=60)
                                                                                            TAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTT  >  SRR4302532.2411797/1‑94 (MQ=60)
                                                                                             |                                                                                            
TTTCCCGATGAGTAAGGAGGGCTGATTCCGTGCTGTTATAACGATAGTTACCTGAATGCGTAATCAGGTAGCTGGCAAGCTTTTGCGTAAAGTAGCATTCGCCGCGCAGGACGCCTTGCAACCCATTGACAACACGTTCTTGATCCTCCATGGAATAAAAAACGCCGTTGATATGAGGCCAGTTTT  >  NC_000913/1101939‑1102124

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑