Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CAAATATGTGAATAATGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGC  >  NC_000913/1124670‑1124854
                                                                                             |                                                                                           
CAAATATGTGAATAATGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTT                                                                                             >  SRR4302532.6009367/1‑94 (MQ=60)
  AATATGTGAATAATGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTAC                                                                                           >  SRR4302532.1351885/1‑94 (MQ=60)
     ATGTGAATAATGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGG                                                                                        <  SRR4302532.4319438/94‑1 (MQ=60)
     ATGTGAATAATGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGG                                                                                        <  SRR4302532.5622918/94‑1 (MQ=60)
      TGTGAATAATGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGA                                                                                       >  SRR4302532.839847/1‑94 (MQ=60)
      TGTGAATAATGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGA                                                                                       >  SRR4302532.5916352/1‑94 (MQ=60)
       GTGAATAATGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAA                                                                                      >  SRR4302532.2815065/1‑94 (MQ=60)
        TGAATAATGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAG                                                                                     <  SRR4302532.1789733/94‑1 (MQ=60)
        TGAATAATGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAG                                                                                     >  SRR4302532.2158103/1‑94 (MQ=60)
           ATAATGCAGAAAATGGCATTTTGTACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAG                                                                                  <  SRR4302532.5891045/94‑1 (MQ=60)
           ATAATGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAG                                                                                  <  SRR4302532.2990961/94‑1 (MQ=60)
           ATAATGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAG                                                                                  >  SRR4302532.582780/1‑94 (MQ=60)
            TAATGCCGAAAATGGCATTTTCGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGT                                                                                 <  SRR4302532.50655/94‑1 (MQ=60)
            TAATGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGT                                                                                 >  SRR4302532.3103925/1‑94 (MQ=60)
            TAATGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGT                                                                                 <  SRR4302532.50654/94‑1 (MQ=60)
              ATGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAG                                                                               >  SRR4302532.4285193/1‑94 (MQ=60)
              ATGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAG                                                                               >  SRR4302532.2757473/1‑94 (MQ=60)
              ATGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAG                                                                               <  SRR4302532.4863107/94‑1 (MQ=60)
              ATGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGCAG                                                                               >  SRR4302532.5312224/1‑94 (MQ=60)
               TGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGG                                                                              >  SRR4302532.621025/1‑94 (MQ=60)
                GCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGT                                                                             <  SRR4302532.6074272/94‑1 (MQ=60)
                 CAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTA                                                                            <  SRR4302532.3526181/94‑1 (MQ=60)
                 CAGAAAAGGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTA                                                                            <  SRR4302532.2392479/94‑1 (MQ=60)
                  AGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTAT                                                                           >  SRR4302532.5291682/1‑94 (MQ=60)
                  AGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTAT                                                                           >  SRR4302532.1482910/1‑94 (MQ=60)
                   GAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATA                                                                          >  SRR4302532.1599879/1‑94 (MQ=60)
                     AAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGAAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGA                                                                        >  SRR4302532.886478/1‑94 (MQ=60)
                      AATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAA                                                                       <  SRR4302532.4836652/94‑1 (MQ=60)
                       ATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAAT                                                                      >  SRR4302532.492314/1‑94 (MQ=60)
                        TGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATG                                                                     >  SRR4302532.3342413/1‑94 (MQ=60)
                        TGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATG                                                                     >  SRR4302532.3631988/1‑94 (MQ=60)
                         GGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGT                                                                    >  SRR4302532.137244/1‑94 (MQ=60)
                          GCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTT                                                                   >  SRR4302532.4161988/1‑94 (MQ=60)
                          GCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTT                                                                   >  SRR4302532.4705378/1‑94 (MQ=60)
                           CATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTT                                                                  >  SRR4302532.5551136/1‑94 (MQ=60)
                           CATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTT                                                                  >  SRR4302532.3801415/1‑94 (MQ=60)
                           CATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGCGAAGGAGTAGGTATAGAATGTTT                                                                  >  SRR4302532.3601674/1‑94 (MQ=60)
                             TTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGG                                                                >  SRR4302532.6285521/1‑94 (MQ=60)
                               TTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCT                                                              >  SRR4302532.4331100/1‑94 (MQ=60)
                                 GGTCTTTTCACAGGGTCTGGTTGTGCAGGTATAGAAATACTTACAGCGTATTAAAGACGTTACGGGTAGGAATTGGTATAGAATGTTTGtgtat                                                            >  SRR4302532.5757016/1‑89 (MQ=60)
                                 GGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTAT                                                            >  SRR4302532.1328040/1‑94 (MQ=60)
                                   TCTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCG                                                          <  SRR4302532.3201060/94‑1 (MQ=60)
                                   ACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCG                                                          >  SRR4302532.1365778/1‑94 (MQ=60)
                                    CTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATTGC                                                         >  SRR4302532.2602358/1‑94 (MQ=60)
                                      TTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAG                                                       <  SRR4302532.5582832/94‑1 (MQ=60)
                                        TCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTA                                                     <  SRR4302532.985996/94‑1 (MQ=60)
                                         CACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAA                                                    >  SRR4302532.6328891/1‑94 (MQ=60)
                                         CACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAA                                                    >  SRR4302532.107449/1‑94 (MQ=60)
                                         CACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAA                                                    >  SRR4302532.3725916/1‑94 (MQ=60)
                                          ACAGGTGCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAAC                                                   <  SRR4302532.2284681/94‑1 (MQ=60)
                                          ACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAAC                                                   >  SRR4302532.2909225/1‑94 (MQ=60)
                                           CAGGGTCTTGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACG                                                  <  SRR4302532.3438910/94‑1 (MQ=60)
                                           CAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCATTAACG                                                  >  SRR4302532.446794/1‑94 (MQ=60)
                                           CAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACG                                                  >  SRR4302532.6052406/1‑94 (MQ=60)
                                            AGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGG                                                 >  SRR4302532.4936735/1‑94 (MQ=60)
                                             GGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTG                                                <  SRR4302532.6206565/94‑1 (MQ=60)
                                              GGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGC                                               >  SRR4302532.6058286/1‑94 (MQ=60)
                                                TCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCA                                             <  SRR4302532.6270406/94‑1 (MQ=60)
                                                 CTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAA                                            >  SRR4302532.726449/1‑94 (MQ=60)
                                                 CTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAA                                            >  SRR4302532.4677597/1‑94 (MQ=60)
                                                    GTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAG                                         >  SRR4302532.4229304/1‑94 (MQ=60)
                                                       TCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGC                                      <  SRR4302532.4562648/94‑1 (MQ=60)
                                                         GCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGTAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGAGCGC                                    >  SRR4302532.3027218/1‑94 (MQ=60)
                                                           AGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTT                                  >  SRR4302532.21086/1‑94 (MQ=60)
                                                            GGTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTA                                 <  SRR4302532.3445166/94‑1 (MQ=60)
                                                             GTATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAA                                >  SRR4302532.1538011/1‑94 (MQ=60)
                                                              TATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAAC                               >  SRR4302532.665313/1‑94 (MQ=60)
                                                              TATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAAC                               <  SRR4302532.5008679/94‑1 (MQ=60)
                                                              TATAGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAAC                               >  SRR4302532.2804435/1‑94 (MQ=60)
                                                                TAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCA                             <  SRR4302532.597384/94‑1 (MQ=60)
                                                                 AGTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCAC                            >  SRR4302532.1660129/1‑94 (MQ=60)
                                                                  GTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACA                           >  SRR4302532.5030525/1‑94 (MQ=60)
                                                                  GTAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACA                           >  SRR4302532.4801417/1‑94 (MQ=60)
                                                                   TAATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAG                          >  SRR4302532.723685/1‑94 (MQ=60)
                                                                    AATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGA                         >  SRR4302532.3194333/1‑94 (MQ=60)
                                                                     ATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGAC                        >  SRR4302532.5397928/1‑94 (MQ=60)
                                                                     ATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGAC                        >  SRR4302532.5888610/1‑94 (MQ=60)
                                                                     ATACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGAC                        >  SRR4302532.4073397/1‑94 (MQ=60)
                                                                      TACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACC                       <  SRR4302532.2394269/94‑1 (MQ=60)
                                                                      TACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACC                       <  SRR4302532.2394268/94‑1 (MQ=60)
                                                                      TACTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACC                       >  SRR4302532.6094059/1‑94 (MQ=60)
                                                                        CTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGA                     >  SRR4302532.54244/1‑94 (MQ=60)
                                                                        CTTACAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGA                     >  SRR4302532.2355288/1‑94 (MQ=60)
                                                                           ACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTG                  >  SRR4302532.67256/1‑94 (MQ=60)
                                                                           ACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTG                  <  SRR4302532.5305604/94‑1 (MQ=60)
                                                                            CAGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGG                 >  SRR4302532.4031552/1‑94 (MQ=60)
                                                                             AGCGTATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGT                >  SRR4302532.5579178/1‑94 (MQ=60)
                                                                               CGTATTAAAGACGTAACGGGAAGGAGTAGGTATAGAATGGTTGGCTATCGCAGTAACGTGCCATAATTGCGCTTAACCACAGACCGtctgggtt              >  SRR4302532.5641416/1‑86 (MQ=60)
                                                                                 TATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTG            >  SRR4302532.1327190/1‑94 (MQ=60)
                                                                                 TATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTG            >  SRR4302532.5721664/1‑94 (MQ=60)
                                                                                 TATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTG            <  SRR4302532.4037479/94‑1 (MQ=60)
                                                                                 TATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTG            <  SRR4302532.1393893/94‑1 (MQ=60)
                                                                                  ATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGC           <  SRR4302532.950264/94‑1 (MQ=60)
                                                                                  ATTAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGC           >  SRR4302532.3762419/1‑94 (MQ=60)
                                                                                    TAAAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGT         >  SRR4302532.2144829/1‑94 (MQ=60)
                                                                                      AAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCT       >  SRR4302532.5264230/1‑94 (MQ=60)
                                                                                      AAGACGTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCT       >  SRR4302532.392237/1‑94 (MQ=60)
                                                                                       AGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTG      <  SRR4302532.1026885/94‑1 (MQ=60)
                                                                                       AGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGACTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTG      >  SRR4302532.4109785/1‑94 (MQ=60)
                                                                                        GACGTCACGGGAAGGAGTAGGTATAGAATGTTTGACTATCGCAGTAACGTGCCAAAAGAGCGCTTAACCACAGACCGACTCGTCGAGCGTCTGG     >  SRR4302532.1822060/1‑94 (MQ=60)
                                                                                         ACGTCACGGGGAGGAGTAGTTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGT    <  SRR4302532.4621937/94‑1 (MQ=60)
                                                                                          CGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTG   <  SRR4302532.2075811/94‑1 (MQ=60)
                                                                                           GTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGC  >  SRR4302532.2912284/1‑94 (MQ=60)
                                                                                           GTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGC  >  SRR4302532.3763363/1‑94 (MQ=60)
                                                                                           GTCACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGC  >  SRR4302532.665182/1‑94 (MQ=60)
                                                                                             |                                                                                           
CAAATATGTGAATAATGCAGAAAATGGCATTTTGGACTTTTCACAGGGTCTGGTTGCGCAGGTATAGTAATACTTACAGCGTATTAAAGACGTTACGGGAAGGAGTAGGTATAGAATGTTTGGCTATCGCAGTAACGTGCCAAAAGTGCGCTTAACCACAGACCGACTGGTCGTGCGTCTGGTGC  >  NC_000913/1124670‑1124854

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑