Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCGCAATCCACTGATGCATACGAATAAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGACTAAAAATTTGCCTTCTGCGTGCAC  >  NC_000913/1193292‑1193478
                                                                                             |                                                                                             
GAGCAATCCACTGATGCATACGAATAAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGT                                                                                               <  SRR4302532.2142376/94‑1 (MQ=60)
 CGCAATCCACTGATGCATACGAATAAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCT                                                                                              >  SRR4302532.4389956/1‑94 (MQ=60)
 CGCAATCCACTGATGCATACGAAGAAAGGGTTGAGGCTGCGCGCTGGTGCCCGTTTCTTTCCACAGTTCGCGGGCGGCGTGTTCCACTAAGGGT                                                                                              >  SRR4302532.4205536/1‑94 (MQ=48)
  GCAATCCACTGATGCATACGAATAAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGTTT                                                                                             <  SRR4302532.460263/94‑1 (MQ=60)
    AATCCACTGATGCATACGAATAAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGTTTCA                                                                                           >  SRR4302532.3857525/1‑94 (MQ=60)
     ATCCACTGATGCATACGAATAAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGTTTCAT                                                                                          <  SRR4302532.4937588/94‑1 (MQ=60)
      TCCACTGATGCATACGAATAAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATC                                                                                         >  SRR4302532.4781627/1‑94 (MQ=60)
       CCACTGATGCATACGAATAAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGTTTCATCG                                                                                        <  SRR4302532.2737096/94‑1 (MQ=60)
       CCACTGATGCATACGAATAAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGTTTCATCG                                                                                        <  SRR4302532.5636745/94‑1 (MQ=60)
       CCACGGATGCATACGAATAAAGTTTTGCGGCTGCGCGCTGATGCCGTTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGTTTCATCG                                                                                        <  SRR4302532.2737095/94‑1 (MQ=60)
        CACTGATGCATACGAATAAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGG                                                                                       <  SRR4302532.3094200/94‑1 (MQ=60)
          CTGATGCATACGAATAAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCGTCCACTAAGGCTTCATCCGCT                                                                                     >  SRR4302532.1480082/1‑94 (MQ=60)
            GATGCATACGAATAAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTC                                                                                   >  SRR4302532.3380993/1‑94 (MQ=60)
            GATGCATACGAATAAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTC                                                                                   >  SRR4302532.3022123/1‑94 (MQ=60)
             ATGCATACGAATAAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCC                                                                                  >  SRR4302532.3886168/1‑94 (MQ=60)
               GCATACGAATAAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGTTTCATCGGCTTCCAG                                                                                <  SRR4302532.1160785/94‑1 (MQ=60)
               GCATACGAATAAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGTTTCATCGGCTTCCAG                                                                                <  SRR4302532.3629937/94‑1 (MQ=60)
               GCATACGAATAAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCTGCTTCCAG                                                                                >  SRR4302532.300294/1‑94 (MQ=60)
               GCATACGAATAAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAG                                                                                >  SRR4302532.2052518/1‑94 (MQ=60)
               GCATACGAATAAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAG                                                                                >  SRR4302532.2255789/1‑94 (MQ=60)
                CATACGAATAAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGTTTCATCGGCTTCCAGA                                                                               >  SRR4302532.5519753/1‑94 (MQ=60)
                CATACGAATAAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAGA                                                                               >  SRR4302532.4080492/1‑94 (MQ=60)
                CATACGAATAAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAGA                                                                               >  SRR4302532.2371870/1‑94 (MQ=60)
                CATACGAATAAAGTGTTGCGGCTGCCCGCTGATGCCGGTTTCTTCCCACAGTTCACGTGCGGCGGATTCCACTAAGGCTTCATCGGCTTCCAGA                                                                               >  SRR4302532.4034689/1‑94 (MQ=60)
                 ATACGAATAAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGTTTCATCGGCTTCCAGAT                                                                              >  SRR4302532.1222818/1‑94 (MQ=60)
                  TACGAATAAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAGATG                                                                             >  SRR4302532.3226920/1‑94 (MQ=60)
                  CACGAATAAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAGATG                                                                             <  SRR4302532.5823280/94‑1 (MQ=60)
                    CGAATAAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAGATGCC                                                                           >  SRR4302532.5076919/1‑94 (MQ=60)
                     CAATAAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGTTTCATCGGCTTCCAGATGCCC                                                                          <  SRR4302532.1122762/94‑1 (MQ=60)
                      AATAAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGTTTCATCGGCTTCCAGATGCCCG                                                                         <  SRR4302532.4138200/94‑1 (MQ=60)
                         AAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGTTTCATCGGCTTCCAGATGCCCGGCA                                                                      <  SRR4302532.4702348/94‑1 (MQ=60)
                         AAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAGATGCCCGGCA                                                                      >  SRR4302532.5919524/1‑94 (MQ=60)
                         AAAGGGTTGCGGCTGCGCGCTGATATCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCAACTAAGGCGTCATCGGCTTCCAGATGGCCGGCA                                                                      >  SRR4302532.2016626/1‑94 (MQ=60)
                             TGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGTTTCATCGGCTTCCAGCTGCCCGGCAGGTT                                                                  >  SRR4302532.3862436/1‑94 (MQ=60)
                             TGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTT                                                                  <  SRR4302532.2081934/94‑1 (MQ=60)
                             TGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAGATGCCCGGCAGGTT                                                                  >  SRR4302532.2391459/1‑94 (MQ=60)
                               TTGCGGCTGCGCGCTGATGCCGGTTTCCTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAGATGCCCGGCAGGTTGG                                                                <  SRR4302532.5419406/94‑1 (MQ=60)
                                 GCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTT                                                              <  SRR4302532.3720894/94‑1 (MQ=60)
                                   GGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGGTGGTTCC                                                            >  SRR4302532.1928797/1‑94 (MQ=60)
                                   GGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCC                                                            <  SRR4302532.1876912/94‑1 (MQ=60)
                                    GCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCA                                                           <  SRR4302532.29305/94‑1 (MQ=60)
                                    GCTCCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCA                                                           <  SRR4302532.29304/94‑1 (MQ=60)
                                      TGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATA                                                         <  SRR4302532.1344464/94‑1 (MQ=60)
                                       GCGCGCTGATGCTGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAA                                                        <  SRR4302532.149372/94‑1 (MQ=60)
                                       GCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAA                                                        <  SRR4302532.149373/94‑1 (MQ=60)
                                       GCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAA                                                        <  SRR4302532.6139571/94‑1 (MQ=60)
                                        CGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAAC                                                       <  SRR4302532.1676635/94‑1 (MQ=60)
                                         GCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACG                                                      <  SRR4302532.5598805/94‑1 (MQ=60)
                                          CGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGC                                                     >  SRR4302532.3767493/1‑94 (MQ=60)
                                            CTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTT                                                   <  SRR4302532.160219/94‑1 (MQ=60)
                                            CTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTT                                                   <  SRR4302532.2165605/94‑1 (MQ=60)
                                              GATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTA                                                 >  SRR4302532.3685213/1‑94 (MQ=60)
                                               ATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTAC                                                <  SRR4302532.1285169/94‑1 (MQ=60)
                                                 GCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCC                                              >  SRR4302532.1319454/1‑94 (MQ=60)
                                                  CCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCAT                                             >  SRR4302532.3760364/1‑94 (MQ=60)
                                                  CCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCAT                                             >  SRR4302532.1935334/1‑94 (MQ=60)
                                                  CCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCAT                                             <  SRR4302532.2191155/94‑1 (MQ=60)
                                                      TTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAAT                                         >  SRR4302532.3518736/1‑94 (MQ=60)
                                                      TTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAAT                                         <  SRR4302532.1295646/94‑1 (MQ=60)
                                                        TCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCG                                       <  SRR4302532.2819175/94‑1 (MQ=60)
                                                         CTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGT                                      <  SRR4302532.6023856/94‑1 (MQ=60)
                                                         CTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGT                                      <  SRR4302532.491159/94‑1 (MQ=60)
                                                         CTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGT                                      <  SRR4302532.491158/94‑1 (MQ=60)
                                                          TTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTC                                     <  SRR4302532.2316955/94‑1 (MQ=60)
                                                          TTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTC                                     >  SRR4302532.2451302/1‑94 (MQ=60)
                                                          TTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTC                                     <  SRR4302532.3054389/94‑1 (MQ=60)
                                                          TTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTC                                     >  SRR4302532.4910921/1‑94 (MQ=60)
                                                              CACAGTTCACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTT                                 <  SRR4302532.4806335/94‑1 (MQ=60)
                                                               ACAGTTCACGGGCGGCGGCTTCCACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTC                                >  SRR4302532.3539498/1‑94 (MQ=60)
                                                                    TCACGGGCGGCGGCTTCCACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGA                           <  SRR4302532.6231096/94‑1 (MQ=60)
                                                                    TCACGGGCGGCGGCTTCCACTAAGGTTGCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGA                           <  SRR4302532.5497899/94‑1 (MQ=60)
                                                                      CCGGGCGGCGGCTTCCACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGACT                         <  SRR4302532.2234114/94‑1 (MQ=60)
                                                                      ACGGGCGGCGGCTTCCACTAAGGCTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGACT                         <  SRR4302532.3447968/94‑1 (MQ=60)
                                                                         GGCGGCGGCTTCCACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGACTAAA                      <  SRR4302532.2855659/94‑1 (MQ=60)
                                                                            GGCGGCTTCCACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGACTAAAAAT                   >  SRR4302532.484456/1‑94 (MQ=60)
                                                                            GGCGGCTTCCACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGACTAAAAAT                   >  SRR4302532.5397638/1‑94 (MQ=60)
                                                                              CGGCTTCCACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGACTAAAAATTT                 <  SRR4302532.4789509/94‑1 (MQ=60)
                                                                              CGGCTTCCACTAAGGCTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGACTAAAAATTT                 >  SRR4302532.4285367/1‑94 (MQ=60)
                                                                               GGCTTCCACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGACTAAAAATTTG                >  SRR4302532.2118456/1‑94 (MQ=60)
                                                                               GGCTTCCACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGACTAAAAATTTG                <  SRR4302532.573644/94‑1 (MQ=60)
                                                                                GCTTCCACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGACTAAAAATTTGC               <  SRR4302532.2865079/94‑1 (MQ=60)
                                                                                GCTTCCACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGGTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGACTAAAAATTTGC               >  SRR4302532.121180/1‑94 (MQ=60)
                                                                                 CTTCCACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGACTAAAAATTTGCC              >  SRR4302532.1402857/1‑94 (MQ=60)
                                                                                 CTTCCACTAAGGCTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGACTAAAAATTTGCC              <  SRR4302532.2661505/94‑1 (MQ=60)
                                                                                  TTCCACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGACTAAAAATTTGCCT             >  SRR4302532.2325945/1‑94 (MQ=60)
                                                                                  TTCCACTAAGGCTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGACTAAAAATTTGCCT             <  SRR4302532.2279873/94‑1 (MQ=60)
                                                                                  TTCCACTAAGGCTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGACTAAAAATTTGCCT             >  SRR4302532.3847479/1‑94 (MQ=60)
                                                                                   TCCACTAAGGCTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGACTAAAAATTTGCCTT            <  SRR4302532.970302/94‑1 (MQ=60)
                                                                                    CCACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGACTAAAAATTTGCCTTC           <  SRR4302532.5628827/94‑1 (MQ=60)
                                                                                     CACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGACTAAAAATTTGCCTTCT          >  SRR4302532.3063994/1‑94 (MQ=60)
                                                                                     CACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGACTAAAAATTTGCCTTCT          <  SRR4302532.1467304/94‑1 (MQ=60)
                                                                                        TAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGACTAAAAATTTGCCTTCTGCG       <  SRR4302532.3437241/94‑1 (MQ=60)
                                                                                        TAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGGTCCATAACGCTTTACCATTAATCGTCTCTTCAACGACTAAAAATTTGCCTTCTGCG       >  SRR4302532.2647342/1‑94 (MQ=60)
                                                                                         AAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGACTAAAAATTTGCCTTCTGCGT      >  SRR4302532.1850252/1‑94 (MQ=60)
                                                                                         AAGGCTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGACTAAAAATTTGCCTTCTGCGT      >  SRR4302532.2869381/1‑94 (MQ=60)
                                                                                            GCTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGACTAAAAATTTGCCTTCTGCGTGCA   >  SRR4302532.547223/1‑94 (MQ=60)
                                                                                            GCTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGACTAAAAATTTGCCTTCTGCGTGCA   <  SRR4302532.2679711/94‑1 (MQ=60)
                                                                                             CTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGACTAAAAATTTGCCTTCTGCGTGCAC  <  SRR4302532.872767/94‑1 (MQ=60)
                                                                                             |                                                                                             
GCGCAATCCACTGATGCATACGAATAAAGTGTTGCGGCTGCGCGCTGATGCCGGTTTCTTCCCACAGTTCACGGGCGGCGGCTTCCACTAAGGTTTCATCGGCTTCCAGATGCCCGGCAGGTTGGTTCCATAACGCTTTACCATTAATCGTCTCTTCAACGACTAAAAATTTGCCTTCTGCGTGCAC  >  NC_000913/1193292‑1193478

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑