Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	593	264.2	13311096	97.8%	13018251	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,193,636	A→G	V170A (GTG→GCG)	ymfC ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,193,636	0	A	G	84.4%	525.3 / 78.6	212	V170A (GTG→GCG)	ymfC	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (17/16); new base G (80/98); total (97/115)
Fisher's exact test for biased strand distribution p-value = 5.69e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 217 total aligned reads displayed.

ACCATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCACCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGGATTCCGCGGCCATAA  >  NC_000913/1193545‑1193727

 ccATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGcc                                                                                           <  2:3247441/93‑1 (MQ=255)

  cATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCt                                                                                          >  1:4570437/1‑93 (MQ=255)

  cATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCt                                                                                          >  1:4450984/1‑93 (MQ=255)

  cATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCACCt                                                                                          <  1:1725341/93‑1 (MQ=255)

    ttGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTgg                                                                                        <  1:372459/93‑1 (MQ=255)

      ggCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCg                                                                                      >  1:6628486/1‑93 (MQ=255)

      ggCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCACCTGGCg                                                                                      >  2:1625011/1‑93 (MQ=255)

       gCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGa                                                                                     <  2:3532681/93‑1 (MQ=255)

       gCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCACCTGGCGa                                                                                     <  2:183292/93‑1 (MQ=255)

        cAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCACCTGGCGAt                                                                                    <  1:1018433/93‑1 (MQ=255)

         aaGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGAtt                                                                                   <  2:1178458/93‑1 (MQ=255)

         aaGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGAtt                                                                                   <  1:6323250/93‑1 (MQ=255)

           gATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTAc                                                                                 >  2:2584943/1‑93 (MQ=255)

            aTTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACg                                                                                <  1:45255/93‑1 (MQ=255)

              tATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTc                                                                              >  2:4043309/1‑93 (MQ=255)

               aTCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTcc                                                                             >  2:797255/1‑93 (MQ=255)

                tCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCt                                                                            <  2:1393113/93‑1 (MQ=255)

                tCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCACCTGGCGATTACGTCCt                                                                            >  2:4534442/1‑93 (MQ=255)

                   aaaGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCa                                                                         >  1:2309945/1‑93 (MQ=255)

                   aaaGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCa                                                                         <  2:6589465/93‑1 (MQ=255)

                   aaaGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCa                                                                         >  2:6174772/1‑93 (MQ=255)

                    aaGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCat                                                                        >  1:3590757/1‑93 (MQ=255)

                      gagTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCatat                                                                      <  1:5513389/93‑1 (MQ=255)

                       agTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCAtata                                                                     <  1:831337/93‑1 (MQ=255)

                        gTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCACCTGGCGATTACGTCCTTCATATaa                                                                    >  2:3996111/1‑93 (MQ=255)

                         tAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAg                                                                   >  2:3825558/1‑93 (MQ=255)

                         tAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAg                                                                   >  1:2262588/1‑93 (MQ=255)

                          aaTCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAgg                                                                  <  2:1136861/93‑1 (MQ=255)

                           aTCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATCAGGt                                                                 >  1:1145482/1‑93 (MQ=255)

                           aTCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAgggg                                                                 >  2:6647672/1‑92 (MQ=255)

                           aTCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGt                                                                 <  1:5296018/93‑1 (MQ=255)

                            tCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTg                                                                <  2:2941097/93‑1 (MQ=255)

                            tCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTg                                                                >  1:2992926/1‑93 (MQ=255)

                            tCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCACCTGGCGATTACGTCCTTCATATAAGGTg                                                                >  1:5039935/1‑93 (MQ=255)

                             cACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGa                                                               >  1:6071207/1‑93 (MQ=255)

                              aCCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGAt                                                              <  1:3174310/93‑1 (MQ=255)

                                 cATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCtt                                                           >  2:1800119/1‑93 (MQ=255)

                                  aTCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTc                                                          <  2:5605401/93‑1 (MQ=255)

                                  aTCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTc                                                          <  2:6557247/93‑1 (MQ=255)

                                  aTCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTc                                                          <  1:3947575/93‑1 (MQ=255)

                                   tCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCttta                                                         <  1:4190614/93‑3 (MQ=255)

                                   tCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTca                                                         >  1:179820/1‑93 (MQ=255)

                                     gCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTcagc                                                       <  2:2200866/93‑1 (MQ=255)

                                      cATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTcagcc                                                      >  2:5352922/1‑93 (MQ=255)

                                      cATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTcagcc                                                      <  1:536404/93‑1 (MQ=255)

                                      cATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCACCTGGCGATTACGTCCTTCATATAAGGTGATCTTcagcc                                                      <  1:3205235/93‑1 (MQ=255)

                                       aTAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTcagcca                                                     >  1:576947/1‑93 (MQ=255)

                                       aTAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTcagcca                                                     >  2:363728/1‑93 (MQ=255)

                                        tAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTcagccag                                                    <  2:4360944/93‑1 (MQ=255)

                                        tAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTcagccag                                                    >  1:1075176/1‑93 (MQ=255)

                                         aGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCACCTGGCGATTACGTCCTTCATATAAGGTGATCTTcagccagc                                                   <  2:5226835/93‑1 (MQ=255)

                                           cGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCtg                                                 <  1:5598593/93‑1 (MQ=255)

                                           cGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCtg                                                 >  1:417021/1‑93 (MQ=255)

                                            gAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCtgg                                                >  2:3487497/1‑93 (MQ=255)

                                              aTCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCtggtg                                              <  1:3316966/93‑1 (MQ=255)

                                              aTCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCtggtg                                              <  2:3156801/93‑1 (MQ=255)

                                               tCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCtggtgg                                             <  2:5125983/93‑1 (MQ=255)

                                               acAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCtggtgg                                             <  2:2017478/92‑1 (MQ=255)

                                                cAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTggg                                            >  1:34709/1‑93 (MQ=255)

                                                cAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTggg                                            <  2:5918008/93‑1 (MQ=255)

                                                 aGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGa                                           <  1:5203564/93‑1 (MQ=255)

                                                   tCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAAt                                         <  1:1280159/93‑1 (MQ=255)

                                                   tCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAAt                                         >  1:6356875/1‑93 (MQ=255)

                                                    cGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATa                                        >  2:6149586/1‑93 (MQ=255)

                                                     gCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCACCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATAc                                       <  1:266789/93‑1 (MQ=255)

                                                      cAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCACCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACt                                      >  1:4356757/1‑93 (MQ=255)

                                                        gCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACttt                                    <  2:4955403/93‑1 (MQ=255)

                                                        gCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACttt                                    <  2:1092543/93‑1 (MQ=255)

                                                        gCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACttt                                    >  1:6003432/1‑93 (MQ=255)

                                                          gTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGCGATCTTCAGCCAGCTGGTGGGAATACTTTTg                                  >  1:5353611/1‑93 (MQ=255)

                                                          gTGGGGAAGCAAAGATGGGCGGTCATGCGGCGCTCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTg                                  <  1:2214124/93‑1 (MQ=255)

                                                           tGGGGAAGCCAACATGGGCGGTCATGCGGCGCACCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGc                                 <  2:6416621/93‑1 (MQ=255)

                                                            ggggAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCg                                >  1:2168085/1‑93 (MQ=255)

                                                               gAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTc                             >  1:5248772/1‑93 (MQ=255)

                                                                aaGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCa                            <  1:6251100/93‑1 (MQ=255)

                                                                   ccAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGa                         >  1:1410616/1‑93 (MQ=255)

                                                                   ccAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGa                         >  2:1011269/1‑93 (MQ=255)

                                                                   ccAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGa                         <  2:3421616/93‑1 (MQ=255)

                                                                    cAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGaa                        >  2:4984408/1‑93 (MQ=255)

                                                                    cAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGaa                        <  1:2572528/93‑1 (MQ=255)

                                                                    cAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGaa                        <  2:4761430/93‑1 (MQ=255)

                                                                     aaCATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAAt                       <  2:703733/93‑1 (MQ=255)

                                                                        aTGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATtgg                    >  1:1288741/1‑93 (MQ=255)

                                                                         tGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATtggt                   <  1:4661906/93‑1 (MQ=255)

                                                                         tGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATtggt                   >  1:1477186/1‑93 (MQ=255)

                                                                         tGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATtggt                   <  1:2071982/93‑1 (MQ=255)

                                                                          gggCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATtggtg                  <  1:38618/93‑1 (MQ=255)

                                                                          gggCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATtggtg                  >  1:5791575/1‑93 (MQ=255)

                                                                          gggCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATtggtg                  <  1:4822421/93‑1 (MQ=255)

                                                                           ggCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATtggtgg                 >  2:4184193/1‑93 (MQ=255)

                                                                           ggCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATtggtgg                 >  2:2672971/1‑93 (MQ=255)

                                                                            gCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGGa                <  1:2748543/93‑1 (MQ=255)

                                                                               gTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGGATTc             >  1:3797473/1‑93 (MQ=255)

                                                                               gTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGGATTc             <  1:6141312/93‑1 (MQ=255)

                                                                               gTCATGCGGCGCACCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGGATTc             <  2:565368/93‑1 (MQ=255)

                                                                               gTCATGCGGCGCACCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGGATTc             >  1:4302857/1‑93 (MQ=255)

                                                                                tCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGGATTcc            <  2:2961781/93‑1 (MQ=255)

                                                                                    gcggcgCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGGATTCCGCgg        <  2:5391230/93‑1 (MQ=255)

                                                                                      ggcgCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGGATTCCGCGGcc      >  2:4273504/1‑93 (MQ=255)

                                                                                      ggcgCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGGATTCCGCGGcc      <  2:2244280/93‑1 (MQ=255)

ACCATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCACCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGGATTCCGCGGCCATAA  >  NC_000913/1193545‑1193727

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CACCATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCACCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGGATTCCGCGGCCATAACC  >  NC_000913/1193544‑1193729

CACCATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGC                                                                                              >  SRR4302547.1803146/1‑94 (MQ=60)

CACCATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCAC                                                                                              >  SRR4302547.5581231/1‑94 (MQ=60)

CACCATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCAC                                                                                              >  SRR4302547.3891353/1‑94 (MQ=60)

 ACCATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGCAGCCAACATGGGCGGTCATGCGGCGCGCC                                                                                             >  SRR4302547.6198990/1‑94 (MQ=60)

  CCATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCT                                                                                            <  SRR4302547.4413384/94‑1 (MQ=60)

  CCATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCT                                                                                            >  SRR4302547.4543001/1‑94 (MQ=60)

  CCATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCT                                                                                            >  SRR4302547.4665008/1‑94 (MQ=60)

  CCATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCACCT                                                                                            <  SRR4302547.6412123/94‑1 (MQ=60)

   CATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTG                                                                                           >  SRR4302547.3250728/1‑94 (MQ=60)

   CATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCACCTG                                                                                           <  SRR4302547.1759250/94‑1 (MQ=60)

   CACTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTG                                                                                           >  SRR4302547.4624763/1‑94 (MQ=60)

    ATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGG                                                                                          <  SRR4302547.1008969/94‑1 (MQ=60)

    ATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGG                                                                                          >  SRR4302547.4404270/1‑94 (MQ=60)

    ATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGG                                                                                          <  SRR4302547.5408900/94‑1 (MQ=60)

     TTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGC                                                                                         <  SRR4302547.379360/94‑1 (MQ=60)

      TGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGTGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCG                                                                                        <  SRR4302547.5666413/94‑1 (MQ=60)

      TGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCG                                                                                        >  SRR4302547.6766469/1‑94 (MQ=60)

        GCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGAT                                                                                      <  SRR4302547.2999557/94‑1 (MQ=60)

         CAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATT                                                                                     >  SRR4302547.126158/1‑94 (MQ=60)

         CAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATT                                                                                     >  SRR4302547.1135316/1‑94 (MQ=60)

         CAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCACCTGGCGATT                                                                                     <  SRR4302547.1038385/94‑1 (MQ=60)

          AAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTA                                                                                    >  SRR4302547.4450057/1‑94 (MQ=60)

          AAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTA                                                                                    <  SRR4302547.6454728/94‑1 (MQ=60)

          AAGATTAACCAAAGAGTAATCACCTATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGACGGCCATGCGGCGCGCCTGGCGgttg                                                                                    >  SRR4302547.2146014/1‑90 (MQ=60)

             ATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGT                                                                                 <  SRR4302547.46094/94‑1 (MQ=60)

                 TCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTT                                                                             <  SRR4302547.2190299/94‑1 (MQ=60)

                  CCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCACCTGGCGATTACGTCCTTC                                                                            >  SRR4302547.386110/1‑94 (MQ=60)

                   CAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCA                                                                           >  SRR4302547.1064608/1‑94 (MQ=60)

                   CAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCA                                                                           >  SRR4302547.2356783/1‑94 (MQ=60)

                    AAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCAT                                                                          >  SRR4302547.3664010/1‑94 (MQ=60)

                      AGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATAT                                                                        <  SRR4302547.1322115/94‑1 (MQ=60)

                      AGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATAT                                                                        <  SRR4302547.3813261/94‑1 (MQ=60)

                       GAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATA                                                                       <  SRR4302547.5627208/94‑1 (MQ=60)

                        AGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAA                                                                      <  SRR4302547.847208/94‑1 (MQ=60)

                         GTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAG                                                                     <  SRR4302547.4246173/94‑1 (MQ=60)

                         GTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAG                                                                     >  SRR4302547.2308307/1‑94 (MQ=60)

                         GTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCACCTGGCGATTACGTCCTTCATATAAG                                                                     <  SRR4302547.6502217/94‑1 (MQ=60)

                           AATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATCAGGT                                                                   >  SRR4302547.1168639/1‑94 (MQ=60)

                           AATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGT                                                                   <  SRR4302547.3966683/94‑1 (MQ=60)

                           AATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCACCTGGCGATTACGTCCTTCATATAAGGT                                                                   >  SRR4302547.6477739/1‑94 (MQ=60)

                            ATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTG                                                                  >  SRR4302547.3052462/1‑94 (MQ=60)

                            ATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTG                                                                  >  SRR4302547.3138053/1‑94 (MQ=60)

                            ATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTG                                                                  <  SRR4302547.5405284/94‑1 (MQ=60)

                            ATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCACCTGGCGATTACGTCCTTCATATAAGGTG                                                                  >  SRR4302547.5144019/1‑94 (MQ=60)

                             TCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGA                                                                 >  SRR4302547.6197138/1‑94 (MQ=60)

                              CACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGAT                                                                <  SRR4302547.3289719/94‑1 (MQ=60)

                              CACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGAT                                                                >  SRR4302547.3693779/1‑94 (MQ=60)

                              CACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGAT                                                                >  SRR4302547.5403174/1‑94 (MQ=60)

                               ACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATC                                                               <  SRR4302547.3237502/94‑1 (MQ=60)

                                CCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCT                                                              >  SRR4302547.2355660/1‑94 (MQ=60)

                                 CCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTT                                                             >  SRR4302547.621006/1‑94 (MQ=60)

                                 CCATCGAATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTT                                                             >  SRR4302547.5624665/1‑94 (MQ=60)

                                  CATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTC                                                            <  SRR4302547.4939720/94‑1 (MQ=60)

                                   ATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCA                                                           <  SRR4302547.4027869/94‑1 (MQ=60)

                                   ATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCA                                                           >  SRR4302547.183191/1‑94 (MQ=60)

                                    TCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTTAG                                                          <  SRR4302547.4276076/94‑1 (MQ=60)

                                      GCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCC                                                        <  SRR4302547.5911143/94‑1 (MQ=60)

                                       CATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCA                                                       <  SRR4302547.546096/94‑1 (MQ=60)

                                       CATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCA                                                       >  SRR4302547.587290/1‑94 (MQ=60)

                                       CATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCACCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCA                                                       <  SRR4302547.3269160/94‑1 (MQ=60)

                                        ATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAG                                                      >  SRR4302547.1096633/1‑94 (MQ=60)

                                        ATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAG                                                      <  SRR4302547.3439824/94‑1 (MQ=60)

                                         TAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGC                                                     <  SRR4302547.1495073/94‑1 (MQ=60)

                                          AGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCACCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCT                                                    <  SRR4302547.5755946/94‑1 (MQ=60)

                                           GCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTG                                                   >  SRR4302547.424751/1‑94 (MQ=60)

                                           GCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTG                                                   >  SRR4302547.4262242/1‑94 (MQ=60)

                                            CGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGG                                                  <  SRR4302547.5714082/94‑1 (MQ=60)

                                            CGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGG                                                  <  SRR4302547.3228947/94‑1 (MQ=60)

                                             GAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGT                                                 <  SRR4302547.4379452/94‑1 (MQ=60)

                                              AATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTG                                                >  SRR4302547.2295464/1‑94 (MQ=60)

                                               ATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGG                                               <  SRR4302547.1493869/94‑1 (MQ=60)

                                               ATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGG                                               <  SRR4302547.3383896/94‑1 (MQ=60)

                                                TCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGG                                              >  SRR4302547.35340/1‑94 (MQ=60)

                                                TCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGG                                              <  SRR4302547.1689709/94‑1 (MQ=60)

                                                 CAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGA                                             <  SRR4302547.5320392/94‑1 (MQ=60)

                                                 CAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCACCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGA                                             >  SRR4302547.467939/1‑94 (MQ=60)

                                                  AGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAA                                            <  SRR4302547.5310635/94‑1 (MQ=60)

                                                   GTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAAT                                           >  SRR4302547.6489418/1‑94 (MQ=60)

                                                   GTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAAT                                           >  SRR4302547.700583/1‑94 (MQ=60)

                                                    TCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATA                                          <  SRR4302547.1305935/94‑1 (MQ=60)

                                                      GCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCACCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACT                                        >  SRR4302547.4446250/1‑94 (MQ=60)

                                                      GCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCACCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACT                                        <  SRR4302547.271782/94‑1 (MQ=60)

                                                        AGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTT                                      >  SRR4302547.6128019/1‑94 (MQ=60)

                                                         GCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTT                                     <  SRR4302547.1945219/94‑1 (MQ=60)

                                                         GCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTT                                     <  SRR4302547.5049159/94‑1 (MQ=60)

                                                          CGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGCGATCTTCAGCCAGCTGGTGGGAATACTTTTG                                    >  SRR4302547.5464006/1‑94 (MQ=60)

                                                           GTGGGGAAGCAAAGATGGGCGGTCATGCGGCGCTCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGA                                   <  SRR4302547.2258661/94‑1 (MQ=60)

                                                            TGGGGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCG                                  >  SRR4302547.2211446/1‑94 (MQ=60)

                                                               GGAAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTC                               >  SRR4302547.5356827/1‑94 (MQ=60)

                                                                 AAGCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCAC                             <  SRR4302547.6380958/94‑1 (MQ=60)

                                                                   GCCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGA                           >  SRR4302547.1438831/1‑94 (MQ=60)

                                                                    CCAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGNTGGGAATACTTTTGCGTTCACGAA                          >  SRR4302547.2686205/1‑94 (MQ=60)

                                                                     CAACATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAAT                         <  SRR4302547.2624468/94‑1 (MQ=60)

                                                                       ACATGGGCGGTCATGCGGCGCACCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTG                       <  SRR4302547.3561319/94‑1 (MQ=60)

                                                                        CATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGG                      >  SRR4302547.1314693/1‑94 (MQ=60)

                                                                         ATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGT                     >  SRR4302547.1506688/1‑94 (MQ=60)

                                                                         ATGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGT                     <  SRR4302547.710987/94‑1 (MQ=60)

                                                                          TGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTG                    <  SRR4302547.2238775/94‑1 (MQ=60)

                                                                          TGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTG                    <  SRR4302547.1309756/94‑1 (MQ=60)

                                                                          TGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTG                    <  SRR4302547.2113335/94‑1 (MQ=60)

                                                                          TGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTG                    >  SRR4302547.5911369/1‑94 (MQ=60)

                                                                          TGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTG                    <  SRR4302547.4758454/94‑1 (MQ=60)

                                                                          TGGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTG                    >  SRR4302547.1808022/1‑94 (MQ=60)

                                                                           GGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGG                   <  SRR4302547.39339/94‑1 (MQ=60)

                                                                           GGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGG                   <  SRR4302547.4922363/94‑1 (MQ=60)

                                                                           GGGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGG                   <  SRR4302547.2395412/94‑1 (MQ=60)

                                                                            GGCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGGA                  >  SRR4302547.4617263/1‑94 (MQ=60)

                                                                             GCGGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGGAT                 <  SRR4302547.2803663/94‑1 (MQ=60)

                                                                               GGTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGGATTC               >  SRR4302547.3874890/1‑94 (MQ=60)

                                                                               GGTCATGCGGCGCACCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGGATTC               >  SRR4302547.595145/1‑94 (MQ=60)

                                                                               GGTCATGCGGCGCACCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGGATTC               >  SRR4302547.4391360/1‑94 (MQ=60)

                                                                                GTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGGATTCC              <  SRR4302547.6268710/94‑1 (MQ=60)

                                                                                GTCATGCGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGGATTCC              <  SRR4302547.4852935/94‑1 (MQ=60)

                                                                                  CATGCGGCGCACCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGGATTCCGC            >  SRR4302547.5165628/1‑94 (MQ=60)

                                                                                      TGGCGCACCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGGATTACGCGGCC        >  SRR4302547.5465177/1‑94 (MQ=60)

                                                                                      CGGCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGGATTCCGCGGCC        >  SRR4302547.6140036/1‑94 (MQ=60)

                                                                                        GCGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGGATTCCGCGGCCAT      >  SRR4302547.2764816/1‑94 (MQ=60)

                                                                                         CGCGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGGATTCCGCGGCCATA     <  SRR4302547.6354300/94‑1 (MQ=60)

                                                                                          GCACCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGGATTCCGCGGCCATAA    >  SRR4302547.228176/1‑94 (MQ=60)

                                                                                           CGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGGATTCCGCGGCCATAAC   <  SRR4302547.5959534/94‑1 (MQ=60)

                                                                                           CGCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGGATTCCGCGGCCATAAC   >  SRR4302547.4488918/1‑94 (MQ=60)

                                                                                            GCCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGACTTGGTGGATTACGCGGCCATAATC  >  SRR4302547.3009038/1‑94 (MQ=60)

                                                                                            ACCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGGATTCCGCGGCCATAACC  >  SRR4302547.2228960/1‑94 (MQ=60)

CACCATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTCGCAGCGTGGGGAAGCCAACATGGGCGGTCATGCGGCGCACCTGGCGATTACGTCCTTCATATAAGGTGATCTTCAGCCAGCTGGTGGGAATACTTTTGCGTTCACGAATTGGTGGATTCCGCGGCCATAACC  >  NC_000913/1193544‑1193729

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`