Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ACGTGAAGTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCAGATTTACCCGGTTATCACC  >  NC_000913/1390650‑1390834
                                                                                             |                                                                                           
ACGTGAAGTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTAT                                                                                             >  SRR4302532.1109922/1‑94 (MQ=60)
  GTGAAGTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCT                                                                                           >  SRR4302532.3156588/1‑94 (MQ=60)
  GTGAAGTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCT                                                                                           >  SRR4302532.4574505/1‑94 (MQ=60)
  GTGAAGTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCT                                                                                           >  SRR4302532.4009165/1‑94 (MQ=60)
  GTGAAGTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCT                                                                                           <  SRR4302532.5505046/94‑1 (MQ=60)
  GTGAAGTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCT                                                                                           <  SRR4302532.2669774/94‑1 (MQ=60)
    GAAGTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTAC                                                                                         <  SRR4302532.4086709/94‑1 (MQ=60)
    GAAGTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTAC                                                                                         <  SRR4302532.2172139/94‑1 (MQ=60)
     AAGTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACC                                                                                        <  SRR4302532.2220591/94‑1 (MQ=60)
     AAGTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACC                                                                                        >  SRR4302532.2522672/1‑94 (MQ=60)
       GTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTT                                                                                      >  SRR4302532.3966981/1‑94 (MQ=60)
       GTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTT                                                                                      >  SRR4302532.5757255/1‑94 (MQ=60)
       GTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCCT                                                                                      <  SRR4302532.3984628/94‑1 (MQ=60)
         TCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTAT                                                                                    <  SRR4302532.18947/94‑1 (MQ=60)
         TCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTAT                                                                                    <  SRR4302532.2127842/94‑1 (MQ=60)
         TCCTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTAT                                                                                    <  SRR4302532.1756983/94‑1 (MQ=60)
          CGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATG                                                                                   <  SRR4302532.4832058/94‑1 (MQ=60)
           GTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGA                                                                                  >  SRR4302532.5555786/1‑94 (MQ=60)
           GTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGA                                                                                  >  SRR4302532.648299/1‑94 (MQ=60)
           GTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCCTATGA                                                                                  >  SRR4302532.648298/1‑94 (MQ=60)
            TGTTCGCATGGAAGGTCGGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGAT                                                                                 <  SRR4302532.6104698/94‑1 (MQ=60)
            TGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGAT                                                                                 <  SRR4302532.3268589/94‑1 (MQ=60)
             GTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATC                                                                                <  SRR4302532.2183424/94‑1 (MQ=60)
             GTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATC                                                                                >  SRR4302532.1997013/1‑94 (MQ=60)
             GTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATC                                                                                <  SRR4302532.1215129/94‑1 (MQ=60)
              TTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCA                                                                               <  SRR4302532.2942750/94‑1 (MQ=60)
              TTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCA                                                                               <  SRR4302532.3567786/94‑1 (MQ=60)
                TGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGG                                                                             <  SRR4302532.4980227/94‑1 (MQ=60)
                CGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGG                                                                             <  SRR4302532.3936847/94‑1 (MQ=60)
                CGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGG                                                                             <  SRR4302532.3936671/94‑1 (MQ=60)
                CGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGG                                                                             >  SRR4302532.2256677/1‑94 (MQ=60)
                CGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGG                                                                             >  SRR4302532.1771714/1‑94 (MQ=60)
                CGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGG                                                                             <  SRR4302532.3253808/94‑1 (MQ=60)
                 GCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGT                                                                            >  SRR4302532.5086727/1‑94 (MQ=60)
                 GCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGT                                                                            <  SRR4302532.3641210/94‑1 (MQ=60)
                   ATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTG                                                                          >  SRR4302532.2723955/1‑94 (MQ=60)
                   ATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTG                                                                          >  SRR4302532.718654/1‑94 (MQ=60)
                     GGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAG                                                                        <  SRR4302532.5947332/94‑1 (MQ=60)
                       AAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATTGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCG                                                                      <  SRR4302532.3083194/94‑1 (MQ=60)
                       AAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCG                                                                      <  SRR4302532.4844556/94‑1 (MQ=60)
                         GGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGGGGG                                                                    >  SRR4302532.2595956/1‑94 (MQ=60)
                         GGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGG                                                                    >  SRR4302532.2595958/1‑94 (MQ=60)
                         GGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGG                                                                    >  SRR4302532.5007791/1‑94 (MQ=60)
                         GGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGG                                                                    <  SRR4302532.3478239/94‑1 (MQ=60)
                            CAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTA                                                                 >  SRR4302532.6195028/1‑94 (MQ=60)
                            CAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTA                                                                 >  SRR4302532.3200188/1‑94 (MQ=60)
                            CAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTA                                                                 >  SRR4302532.1356445/1‑94 (MQ=60)
                             AGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTAT                                                                >  SRR4302532.518202/1‑94 (MQ=60)
                              GCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATT                                                               <  SRR4302532.1681792/94‑1 (MQ=60)
                              GCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATA                                                               <  SRR4302532.5447616/94‑1 (MQ=60)
                                TTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAA                                                             >  SRR4302532.3871327/1‑94 (MQ=60)
                                TTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATTAGGTTGAGCGGGCTATTAA                                                             >  SRR4302532.2799036/1‑94 (MQ=60)
                                  TTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAG                                                           <  SRR4302532.743753/94‑1 (MQ=60)
                                  TTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAG                                                           <  SRR4302532.2952328/94‑1 (MQ=60)
                                  TTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAG                                                           >  SRR4302532.6249745/1‑94 (MQ=60)
                                  TTACTGAACACGATAGACCTGATCATTGATGCTGCAATGGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAG                                                           <  SRR4302532.2742856/94‑1 (MQ=60)
                                   TACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGA                                                          >  SRR4302532.3082833/1‑94 (MQ=60)
                                   TACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGA                                                          <  SRR4302532.6329969/94‑1 (MQ=60)
                                    ACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAA                                                         <  SRR4302532.3835858/94‑1 (MQ=60)
                                     CTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAA                                                        >  SRR4302532.555518/1‑94 (MQ=60)
                                     CTGAAGACGATAGACCTGATTATTGATGCTGCAATTGATGGGCATGGTTTAGCGTATCTACCTTATCATCAGTTCGAGCGGGCTATTAAAGAAA                                                        >  SRR4302532.2316585/1‑94 (MQ=60)
                                         ATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAA                                                    >  SRR4302532.688415/1‑94 (MQ=60)
                                         ATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAA                                                    >  SRR4302532.1352170/1‑94 (MQ=60)
                                            CGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACT                                                 <  SRR4302532.3827837/94‑1 (MQ=60)
                                              ATAGACCTGATCATTGATGCTGCAATTGATTGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGA                                               <  SRR4302532.1882753/94‑1 (MQ=60)
                                              ATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGA                                               >  SRR4302532.5698205/1‑94 (MQ=60)
                                              ATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGA                                               <  SRR4302532.5266368/94‑1 (MQ=60)
                                               TAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGAT                                              <  SRR4302532.2913706/94‑1 (MQ=60)
                                                  ACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACG                                           <  SRR4302532.2307402/94‑1 (MQ=60)
                                                  ACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACG                                           <  SRR4302532.1251861/94‑1 (MQ=60)
                                                   CCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGT                                          >  SRR4302532.335232/1‑94 (MQ=60)
                                                   CCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGT                                          >  SRR4302532.3848806/1‑94 (MQ=60)
                                                    CTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTG                                         >  SRR4302532.4517885/1‑94 (MQ=60)
                                                    CTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTG                                         >  SRR4302532.3398244/1‑94 (MQ=60)
                                                    CTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTG                                         >  SRR4302532.1416810/1‑94 (MQ=60)
                                                    CTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTG                                         >  SRR4302532.4787934/1‑94 (MQ=60)
                                                     TGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAAattgatagggt                                        >  SRR4302532.5298752/1‑83 (MQ=60)
                                                     TGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGT                                        <  SRR4302532.2658912/94‑1 (MQ=60)
                                                     TGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGT                                        >  SRR4302532.4220602/1‑94 (MQ=60)
                                                      TATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTT                                       <  SRR4302532.5011126/94‑1 (MQ=60)
                                                      GATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTT                                       <  SRR4302532.6028686/94‑1 (MQ=60)
                                                      GATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTT                                       <  SRR4302532.3655547/94‑1 (MQ=60)
                                                      GATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTT                                       >  SRR4302532.2770016/1‑94 (MQ=60)
                                                         CATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTG                                    >  SRR4302532.1467644/1‑94 (MQ=60)
                                                         CATTGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTA                                    <  SRR4302532.4910427/94‑1 (MQ=60)
                                                          ATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGG                                   >  SRR4302532.2912130/1‑94 (MQ=60)
                                                           TTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGA                                  >  SRR4302532.1358908/1‑94 (MQ=60)
                                                            TGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGAT                                 <  SRR4302532.4095451/94‑1 (MQ=60)
                                                            TGATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGAT                                 <  SRR4302532.2364147/94‑1 (MQ=60)
                                                             GATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATA                                >  SRR4302532.606501/1‑94 (MQ=60)
                                                             GATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATA                                >  SRR4302532.606502/1‑94 (MQ=60)
                                                             GATGCTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATA                                >  SRR4302532.2272026/1‑94 (MQ=60)
                                                               TGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAA                              >  SRR4302532.6065553/1‑94 (MQ=60)
                                                               TGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAA                              >  SRR4302532.1193569/1‑94 (MQ=60)
                                                                 CTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATGCGTGTTTTGGATAAATT                            <  SRR4302532.2304800/94‑1 (MQ=60)
                                                                 CTGCAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATT                            <  SRR4302532.3480182/94‑1 (MQ=60)
                                                                  TGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTC                           <  SRR4302532.6226753/94‑1 (MQ=60)
                                                                   GCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCA                          <  SRR4302532.4923282/94‑1 (MQ=60)
                                                                    CAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCAC                         <  SRR4302532.3807668/94‑1 (MQ=60)
                                                                    CAATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCAC                         >  SRR4302532.5439513/1‑94 (MQ=60)
                                                                      ATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACAC                       <  SRR4302532.5564090/94‑1 (MQ=60)
                                                                      ATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACAC                       <  SRR4302532.1880399/94‑1 (MQ=60)
                                                                      ATTGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACAC                       >  SRR4302532.3032451/1‑94 (MQ=60)
                                                                        TGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCA                     >  SRR4302532.1385582/1‑94 (MQ=60)
                                                                        TGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCA                     <  SRR4302532.3454268/94‑1 (MQ=60)
                                                                        TGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCA                     <  SRR4302532.5716622/94‑1 (MQ=60)
                                                                        TGATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCA                     <  SRR4302532.4485843/94‑1 (MQ=60)
                                                                         GATGGTCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCAG                    <  SRR4302532.796006/94‑1 (MQ=60)
                                                                         GATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCAG                    <  SRR4302532.5601386/94‑1 (MQ=60)
                                                                          ATGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCAGA                   <  SRR4302532.2324286/94‑1 (MQ=60)
                                                                           TGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCAGAT                  >  SRR4302532.1920426/1‑94 (MQ=60)
                                                                           TGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCAGAT                  >  SRR4302532.3814207/1‑94 (MQ=60)
                                                                           TGGGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCAGAT                  <  SRR4302532.1199228/94‑1 (MQ=60)
                                                                             GGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCAGATTT                <  SRR4302532.5404629/94‑1 (MQ=60)
                                                                             GGCATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCAGATTT                <  SRR4302532.419549/94‑1 (MQ=60)
                                                                                ATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCAGATTTACC             >  SRR4302532.3227210/1‑94 (MQ=60)
                                                                                ATGGATTGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCAGATTTACC             <  SRR4302532.331652/94‑1 (MQ=60)
                                                                                 TGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCAGATTTACCC            <  SRR4302532.1400378/94‑1 (MQ=60)
                                                                                 TGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCAGATTTACCC            <  SRR4302532.244105/94‑1 (MQ=60)
                                                                                  GGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCAGATTTACCCG           <  SRR4302532.6216135/94‑1 (MQ=60)
                                                                                  GGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATCAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCAGATTTACCCG           >  SRR4302532.1809106/1‑94 (MQ=60)
                                                                                  GGATGGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCAGATTTACCCG           <  SRR4302532.837542/94‑1 (MQ=60)
                                                                                   GATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCAGATTTACCCGG          >  SRR4302532.2255702/1‑94 (MQ=60)
                                                                                      TGGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCAGATTTACCCGGTTA       >  SRR4302532.6064417/1‑94 (MQ=60)
                                                                                       GGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCAGATTTACCCGGTTAT      <  SRR4302532.1527406/94‑1 (MQ=60)
                                                                                       GGCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCAGATTTACCCGGTTAT      >  SRR4302532.939804/1‑94 (MQ=60)
                                                                                        GCGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCAGATTTACCCGGTTATC     <  SRR4302532.5752903/94‑1 (MQ=60)
                                                                                         CGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCAGATTTACCCGGTTATCA    <  SRR4302532.2857817/94‑1 (MQ=60)
                                                                                         CGTACCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCAGATTTACCCGGTTATCA    <  SRR4302532.2011280/94‑1 (MQ=60)
                                                                                           TATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCAGATTTACCCGGTTATCACC  >  SRR4302532.2419678/1‑94 (MQ=60)
                                                                                             |                                                                                           
ACGTGAAGTTCGTGTTCGCATGGAAGGTCAGCTTTTACTGAATACGATAGACCTGATCATTGATGCTGCAATTGATGGGCATGGATTGGCGTATCTACCTTATGATCAGGTTGAGCGGGCTATTAAAGAAAAAAAACTGATACGTGTTTTGGATAAATTCACACCAGATTTACCCGGTTATCACC  >  NC_000913/1390650‑1390834

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑