Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AACAACTGGCGAAAGCGTGCCCAAAAGGTATTGATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATCGTTTACCTCTGTTGATGGCT  >  NC_000913/1517676‑1517860
                                                                                            |                                                                                            
AACAACTGGCGAAAGCGTGCCCAAAAGGTATTGATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGC                                                                                             >  SRR4302532.4038339/1‑94 (MQ=60)
AACAACTGGCGAAAGCGTGCCCAAAAGGTATTGATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGC                                                                                             >  SRR4302532.3765170/1‑94 (MQ=60)
  CAACTGGCGAAAGCGTGCCCAAAAGGTATTGATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCAT                                                                                           <  SRR4302532.2443976/94‑1 (MQ=60)
  CAACTGGCGAAAGCGTGCCCAAAAGGTATTGATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATACAT                                                                                           >  SRR4302532.1131563/1‑94 (MQ=60)
   AACTGGCGAAAGCGTGCCCAAAAGGTATTGATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATACATC                                                                                          >  SRR4302532.4344138/1‑94 (MQ=60)
    ACTGGCGAAAGCGTGCCCAAAAGTTATTGATATCTATTATGAAAGCGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCT                                                                                         <  SRR4302532.4646989/94‑1 (MQ=60)
    ACTGGCGAAAGCGTGCCCAAAAGGTATTGATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCT                                                                                         <  SRR4302532.249650/94‑1 (MQ=60)
    ACTGGCGAAAGCGTGCCCAAAAGCTATTGATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCT                                                                                         <  SRR4302532.4646988/94‑1 (MQ=60)
     CTGGCGAAAGCGTGCCCAAAAGGTATTGATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATACATCTC                                                                                        >  SRR4302532.1534427/1‑94 (MQ=60)
      TGGCGAAAAAGTGCCCAAAAGGTATTGATATCTATTATGAAAGCGTGGGCGGTAAGGTATTCAATGCGTTCATCCGGTTACTTAATACATCTGC                                                                                       <  SRR4302532.2878519/94‑1 (MQ=53)
         CGAAAGCGTGCCCAAAAGGTATTGATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCG                                                                                    >  SRR4302532.1924773/1‑94 (MQ=60)
         CGAAAGCGTGCCCAAAAGGTATTGATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATACATCTGCGCG                                                                                    >  SRR4302532.4327679/1‑94 (MQ=60)
          GAAAGCGTGCCCAAAAGGTATTGATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGC                                                                                   >  SRR4302532.5554637/1‑94 (MQ=60)
          GAAAGCGTGCCCAAAAGGTATTGATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATACATCTGCGCGC                                                                                   >  SRR4302532.2620078/1‑94 (MQ=60)
             AGCGTGCCCAAAAGGTATTGATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATT                                                                                <  SRR4302532.3504899/94‑1 (MQ=60)
              GCGTGCCCAAAAGGTATTGATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATACATCTGCGCGCATTC                                                                               <  SRR4302532.3153687/94‑1 (MQ=60)
                    CCAAAAGGTATTGATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCAGTCT                                                                         <  SRR4302532.6228817/94‑1 (MQ=60)
                     CAAAAGGTATTGATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTG                                                                        >  SRR4302532.3090868/1‑94 (MQ=60)
                      AAAAGGTATTGATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGC                                                                       >  SRR4302532.374015/1‑94 (MQ=60)
                      AAAAGGTATTGATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGC                                                                       <  SRR4302532.2152666/94‑1 (MQ=60)
                       AAAGGTATTGATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCG                                                                      <  SRR4302532.2146937/94‑1 (MQ=60)
                       AAAGGTATTGATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCG                                                                      >  SRR4302532.1325726/1‑94 (MQ=60)
                        AAGGTATTGATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGG                                                                     <  SRR4302532.4125014/94‑1 (MQ=60)
                         AGGTATTGATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGA                                                                    <  SRR4302532.2254829/94‑1 (MQ=60)
                              TTGATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGT                                                               <  SRR4302532.1205858/94‑1 (MQ=60)
                              TTGATATCTATTATGAAAACGTGGGCGGTAAGGTATGCGATGCGGTGCTTCCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGT                                                               <  SRR4302532.1188053/94‑1 (MQ=60)
                               TGATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTG                                                              >  SRR4302532.4531008/1‑94 (MQ=60)
                               TGATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTG                                                              <  SRR4302532.2516621/94‑1 (MQ=60)
                               TGATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTG                                                              >  SRR4302532.4268205/1‑94 (MQ=60)
                                GATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGA                                                             >  SRR4302532.1148272/1‑94 (MQ=60)
                                 ATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGTGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAG                                                            >  SRR4302532.5634063/1‑94 (MQ=60)
                                  TATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGC                                                           <  SRR4302532.3117434/94‑1 (MQ=60)
                                   ATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCA                                                          >  SRR4302532.3969414/1‑94 (MQ=60)
                                   ATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGAATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCA                                                          >  SRR4302532.2006703/1‑94 (MQ=60)
                                    TCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAG                                                         >  SRR4302532.2457880/1‑94 (MQ=60)
                                     CTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGC                                                        <  SRR4302532.4512807/94‑1 (MQ=60)
                                      TATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCT                                                       <  SRR4302532.4154639/94‑1 (MQ=60)
                                      TATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCT                                                       >  SRR4302532.6308024/1‑94 (MQ=60)
                                      TATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCT                                                       >  SRR4302532.668725/1‑94 (MQ=60)
                                      TATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCT                                                       <  SRR4302532.5489764/94‑1 (MQ=60)
                                       ATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTA                                                      >  SRR4302532.6056212/1‑94 (MQ=60)
                                        TTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTAT                                                     >  SRR4302532.3649410/1‑94 (MQ=60)
                                         TATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATA                                                    >  SRR4302532.1953699/1‑94 (MQ=60)
                                           TGAAAGCGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAAC                                                  <  SRR4302532.18515/94‑1 (MQ=60)
                                           TGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAAC                                                  <  SRR4302532.1557461/94‑1 (MQ=60)
                                           TGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAAC                                                  <  SRR4302532.2617924/94‑1 (MQ=60)
                                            GAAAACGTTGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACG                                                 <  SRR4302532.6266036/94‑1 (MQ=60)
                                            GAAAACGTGGGCGGTCAGGTATTCGATGCTGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACG                                                 <  SRR4302532.5671605/94‑1 (MQ=60)
                                             AAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGC                                                >  SRR4302532.800398/1‑94 (MQ=60)
                                               AACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTA                                              <  SRR4302532.2770753/94‑1 (MQ=60)
                                               AACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTA                                              >  SRR4302532.2161898/1‑94 (MQ=60)
                                               AACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTA                                              <  SRR4302532.1848440/94‑1 (MQ=60)
                                                ACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTAC                                             >  SRR4302532.2966062/1‑94 (MQ=60)
                                                    GGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAG                                         >  SRR4302532.4065241/1‑94 (MQ=60)
                                                      GCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCT                                       >  SRR4302532.5257858/1‑94 (MQ=60)
                                                       CGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTA                                      >  SRR4302532.3311014/1‑94 (MQ=60)
                                                       CGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTA                                      >  SRR4302532.4925700/1‑94 (MQ=60)
                                                        GGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTAC                                     >  SRR4302532.2655312/1‑94 (MQ=60)
                                                        GGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTAC                                     >  SRR4302532.5529675/1‑94 (MQ=60)
                                                        GGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTAC                                     >  SRR4302532.4165465/1‑94 (MQ=60)
                                                        GGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTAC                                     >  SRR4302532.4171101/1‑94 (MQ=60)
                                                           AAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCAC                                  >  SRR4302532.4779268/1‑94 (MQ=60)
                                                           AAGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCAC                                  <  SRR4302532.3071631/94‑1 (MQ=60)
                                                           AAGGTATTCGATGCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCAC                                  >  SRR4302532.3524032/1‑94 (MQ=60)
                                                            AGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACC                                 >  SRR4302532.5655763/1‑94 (MQ=60)
                                                            AGGTATTCGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACC                                 <  SRR4302532.1456775/94‑1 (MQ=60)
                                                            AGGTATTCGATGCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACC                                 >  SRR4302532.5533358/1‑94 (MQ=60)
                                                            AGGTATTCGATGCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACC                                 <  SRR4302532.4070971/94‑1 (MQ=60)
                                                              GTATTCGATGCGGTGCTACCGTTACTTAATGAATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGATACCACCCG                               >  SRR4302532.6327379/1‑94 (MQ=60)
                                                              GTATTCGATGCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCG                               <  SRR4302532.5815621/94‑1 (MQ=60)
                                                               TACTCGATGCGGTTCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGG                              <  SRR4302532.4726501/94‑1 (MQ=60)
                                                                 TTCGATGCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTC                            <  SRR4302532.100466/94‑1 (MQ=60)
                                                                  TCGATGCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAAGGCTACAGAGCTACCACCCGGTCC                           >  SRR4302532.3664646/1‑94 (MQ=60)
                                                                   CGATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCG                          >  SRR4302532.1532421/1‑94 (MQ=60)
                                                                    GATGCGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGG                         >  SRR4302532.4955601/1‑94 (MQ=60)
                                                                    GATGCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGG                         <  SRR4302532.5546808/94‑1 (MQ=60)
                                                                      TGCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGAT                       <  SRR4302532.2036486/94‑1 (MQ=60)
                                                                       GCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATC                      <  SRR4302532.3877729/94‑1 (MQ=60)
                                                                       GCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATC                      <  SRR4302532.1504822/94‑1 (MQ=60)
                                                                        CGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATCG                     <  SRR4302532.1575124/94‑1 (MQ=60)
                                                                        CGGTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATCG                     <  SRR4302532.2519984/94‑1 (MQ=60)
                                                                         GGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATCGT                    >  SRR4302532.6285370/1‑94 (MQ=60)
                                                                          GTTCTACCGTTACTTAATGCATCTGCGCGCATGCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATCGTT                   <  SRR4302532.5402264/94‑1 (MQ=60)
                                                                          GTGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGCATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATCGTT                   >  SRR4302532.1517951/1‑94 (MQ=60)
                                                                          GTGCTACCGTGACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATCGTT                   <  SRR4302532.202419/94‑1 (MQ=60)
                                                                           TGCTACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATCGTTT                  >  SRR4302532.5499705/1‑94 (MQ=60)
                                                                            GCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATCGTTTA                 >  SRR4302532.4918408/1‑94 (MQ=60)
                                                                             CTCCCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTCCCACCCGGTCCGGATCGTTTAC                <  SRR4302532.4576989/94‑1 (MQ=60)
                                                                              TACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATCGTTTACC               >  SRR4302532.2857731/1‑94 (MQ=60)
                                                                              TACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATCGTTTACC               >  SRR4302532.1081218/1‑94 (MQ=60)
                                                                              TACCGTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATCGTTTACC               >  SRR4302532.2086869/1‑94 (MQ=60)
                                                                              TACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGATGCCACCCGGTCCGGATCGTTTACC               >  SRR4302532.3601881/1‑94 (MQ=60)
                                                                                CCGTTACTTAATACATCTGGGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGGGCTACCACCCGGTCCGGATCGTTTACCTC             >  SRR4302532.2377120/1‑94 (MQ=60)
                                                                                 CGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCTCCCGGTCCGGATCGTTTACCTCT            >  SRR4302532.3608740/1‑94 (MQ=60)
                                                                                  GTTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATCGTTTACCTCTG           >  SRR4302532.5748571/1‑94 (MQ=60)
                                                                                   TTACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATCGTTTACCTCTGT          >  SRR4302532.1475921/1‑94 (MQ=60)
                                                                                    TACTTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATCGTTTACCTCTGTT         >  SRR4302532.1821674/1‑94 (MQ=60)
                                                                                    TACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATCGTTTACCTCTGTT         >  SRR4302532.5200363/1‑94 (MQ=60)
                                                                                     ACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATCGTTTACCTCTGTTG        <  SRR4302532.4020444/94‑1 (MQ=60)
                                                                                       TTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATCGTTTACCTCTGTTGAT      >  SRR4302532.2280426/1‑94 (MQ=60)
                                                                                       TTAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATCGTTTACCTCTGTTGAT      >  SRR4302532.2252756/1‑94 (MQ=60)
                                                                                       TTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCTGGTCCGGATCGTTTACCTCTGTTGAT      <  SRR4302532.5410493/94‑1 (MQ=60)
                                                                                       TTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATCGTTTACCTCTGTTGAT      <  SRR4302532.4032121/94‑1 (MQ=60)
                                                                                        TAATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATCGTTTACCTCTGTTGATG     <  SRR4302532.5192773/94‑1 (MQ=60)
                                                                                        TAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATCGTTTACCTCTGTTGATG     >  SRR4302532.6213099/1‑94 (MQ=60)
                                                                                        TAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATCGTTTACCTCTGTTGATG     >  SRR4302532.628386/1‑94 (MQ=60)
                                                                                         AATGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATCGTTTACCTCTGTTGATGG    >  SRR4302532.1297743/1‑94 (MQ=60)
                                                                                           TGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATCGTTTACCTCTGTTGATGGCT  <  SRR4302532.5064780/94‑1 (MQ=60)
                                                                                           TGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATCGTTTACCTCTGTTGATGGCT  >  SRR4302532.1930898/1‑94 (MQ=60)
                                                                                           TGCATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATCGTTTACCTCTGTTGATGGCT  <  SRR4302532.3367494/94‑1 (MQ=60)
                                                                                            |                                                                                            
AACAACTGGCGAAAGCGTGCCCAAAAGGTATTGATATCTATTATGAAAACGTGGGCGGTAAGGTATTCGATGCGGTGCTACCGTTACTTAATACATCTGCGCGCATTCCCGTCTGCGGATTAGTGAGCAGCTATAACGCTACAGAGCTACCACCCGGTCCGGATCGTTTACCTCTGTTGATGGCT  >  NC_000913/1517676‑1517860

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑