Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTAATCTGTTAACCATTCGCGCCAGCGAATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCAGTCGTTTAACCAGACCT  >  NC_000913/1577037‑1577221
                                                                                             |                                                                                           
GTAATCTGTTAACCATTCGCGCCAGCGAATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCA                                                                                             <  SRR4302532.1577721/94‑1 (MQ=60)
GTAATCTGTTAACCATTCGCGCCAGCGAATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCA                                                                                             <  SRR4302532.3618647/94‑1 (MQ=60)
 TAATCTGTTAACCATTCGCGCCAGCGAATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGG                                                                                            >  SRR4302532.6192107/1‑94 (MQ=60)
   ATCTGTTAACCATTCGCGCCAGCGAATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGG                                                                                          >  SRR4302532.2666255/1‑94 (MQ=60)
     CTGTTAACCATTCGCGCCAGCGAATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAA                                                                                        >  SRR4302532.1593048/1‑94 (MQ=60)
      TGTTAACCATTCGCGCCAGCGAATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAAC                                                                                       >  SRR4302532.467656/1‑94 (MQ=60)
      TGTTAACCATTCGCGCCAGCGAATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAAC                                                                                       >  SRR4302532.3394260/1‑94 (MQ=60)
       GTTAACCATTCGCGCCAGCGAATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACC                                                                                      >  SRR4302532.5762649/1‑94 (MQ=60)
        TTAACCATTCGCGCCAGCGAATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCA                                                                                     <  SRR4302532.3907949/94‑1 (MQ=60)
        TTAACCATTCGCGCCAGCGAATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCA                                                                                     >  SRR4302532.4853948/1‑94 (MQ=60)
         TAACCATTCGCGCCAGCGAATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAA                                                                                    >  SRR4302532.4519847/1‑94 (MQ=60)
           ACCATTCGCGCCAGCGAATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAG                                                                                  <  SRR4302532.1699947/94‑1 (MQ=60)
           ACCATTCGCGCCAGCGAATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAG                                                                                  <  SRR4302532.3017298/94‑1 (MQ=60)
            CCATTCGCGCCAGCGAATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGG                                                                                 >  SRR4302532.5368672/1‑94 (MQ=60)
               TTCGCGCCAGCGAATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACA                                                                              <  SRR4302532.1817023/94‑1 (MQ=60)
                TCGCGCCAGCGAATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAA                                                                             <  SRR4302532.2881308/94‑1 (MQ=60)
                 CGCGCCAGCGAATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAG                                                                            >  SRR4302532.6055447/1‑94 (MQ=60)
                 CGCGCCAGCGAATAGTCAGTAGTGTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGAAACCAAAGGACAAG                                                                            <  SRR4302532.899880/94‑1 (MQ=60)
                  GCGCCAGCGAATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGC                                                                           <  SRR4302532.2169937/94‑1 (MQ=60)
                   CGCCAGCGAATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCT                                                                          <  SRR4302532.1908324/94‑1 (MQ=60)
                   CGCCAGCGAATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCT                                                                          <  SRR4302532.603991/94‑1 (MQ=60)
                   CGCCAGCGAATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCT                                                                          <  SRR4302532.3031538/94‑1 (MQ=60)
                    GCCAGCGAATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTG                                                                         >  SRR4302532.3344749/1‑94 (MQ=60)
                     CCAGCGAATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGC                                                                        >  SRR4302532.413668/1‑94 (MQ=60)
                     CCAGCGAATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGC                                                                        >  SRR4302532.413669/1‑94 (MQ=60)
                      CAGCGAATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCC                                                                       <  SRR4302532.3960696/94‑1 (MQ=60)
                      CAGCGAATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCC                                                                       >  SRR4302532.3056481/1‑94 (MQ=60)
                          GAATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAG                                                                   >  SRR4302532.1925526/1‑94 (MQ=60)
                           AATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGC                                                                  >  SRR4302532.569037/1‑94 (MQ=60)
                             TAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTT                                                                <  SRR4302532.1461649/94‑1 (MQ=60)
                              AGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTA                                                               <  SRR4302532.5343944/94‑1 (MQ=60)
                               GTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTAT                                                              <  SRR4302532.4046340/94‑1 (MQ=60)
                               GTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTAT                                                              >  SRR4302532.4506035/1‑94 (MQ=60)
                                TCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATC                                                             <  SRR4302532.897916/94‑1 (MQ=60)
                                  AGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGG                                                           >  SRR4302532.892081/1‑94 (MQ=60)
                                   GTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGT                                                          >  SRR4302532.2852962/1‑94 (MQ=60)
                                    TAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTT                                                         >  SRR4302532.3039617/1‑94 (MQ=60)
                                    TAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTT                                                         <  SRR4302532.4198465/94‑1 (MQ=60)
                                    TAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTT                                                         <  SRR4302532.2297194/94‑1 (MQ=60)
                                     AGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTT                                                        >  SRR4302532.544000/1‑94 (MQ=60)
                                      GTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTT                                                       >  SRR4302532.3526611/1‑94 (MQ=60)
                                       TTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCT                                                      >  SRR4302532.1335092/1‑94 (MQ=60)
                                       TTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCT                                                      >  SRR4302532.3469918/1‑94 (MQ=60)
                                        TTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTT                                                     >  SRR4302532.849285/1‑94 (MQ=60)
                                         TAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTT                                                    >  SRR4302532.2237282/1‑94 (MQ=60)
                                         TAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTT                                                    >  SRR4302532.1312306/1‑94 (MQ=60)
                                          AATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTC                                                   <  SRR4302532.3300400/94‑1 (MQ=60)
                                           ATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGAAGGGCGGGAACCCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCT                                                  <  SRR4302532.5709751/94‑1 (MQ=60)
                                            TTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTG                                                 <  SRR4302532.2469539/94‑1 (MQ=60)
                                             TATCCATGTTTTGTTTACGGATATTAATGCAAAGATCCCCAGCAGTGCAGGGAGCCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGG                                                <  SRR4302532.3705495/94‑1 (MQ=60)
                                             TAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGG                                                <  SRR4302532.4240355/94‑1 (MQ=60)
                                             TAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGG                                                <  SRR4302532.4646725/94‑1 (MQ=60)
                                             TAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGG                                                <  SRR4302532.6019005/94‑1 (MQ=60)
                                               ACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCT                                              >  SRR4302532.4856721/1‑94 (MQ=60)
                                                CCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTT                                             >  SRR4302532.3594645/1‑94 (MQ=60)
                                                 CATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTA                                            <  SRR4302532.6160831/94‑1 (MQ=60)
                                                  ATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAG                                           >  SRR4302532.4366339/1‑94 (MQ=60)
                                                  ATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAG                                           >  SRR4302532.3345875/1‑94 (MQ=60)
                                                   TGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGATTAGC                                          >  SRR4302532.362612/1‑94 (MQ=60)
                                                    GTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCG                                         >  SRR4302532.1338180/1‑94 (MQ=60)
                                                    GTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCG                                         <  SRR4302532.9888/94‑1 (MQ=60)
                                                    GTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCG                                         <  SRR4302532.3112658/94‑1 (MQ=60)
                                                    GTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCG                                         >  SRR4302532.4726745/1‑94 (MQ=60)
                                                      TTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGCCAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCA                                       <  SRR4302532.4210410/94‑1 (MQ=60)
                                                         GTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTG                                    >  SRR4302532.881096/1‑94 (MQ=60)
                                                         GTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTG                                    >  SRR4302532.4170393/1‑94 (MQ=60)
                                                         GTTTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTG                                    <  SRR4302532.1963079/94‑1 (MQ=60)
                                                          TTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGA                                   >  SRR4302532.6156467/1‑94 (MQ=60)
                                                           TTACGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAA                                  >  SRR4302532.746771/1‑94 (MQ=60)
                                                           TTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAA                                  <  SRR4302532.679225/94‑1 (MQ=60)
                                                              CGGATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAA                               >  SRR4302532.1303430/1‑94 (MQ=60)
                                                              CGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAA                               >  SRR4302532.2166013/1‑94 (MQ=60)
                                                                cgatcttcgggatAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAAT                             <  SRR4302532.5440875/81‑1 (MQ=60)
                                                                GATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAAT                             <  SRR4302532.6261195/94‑1 (MQ=60)
                                                                GATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAAT                             <  SRR4302532.3959770/94‑1 (MQ=60)
                                                                GATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAAT                             <  SRR4302532.2974769/94‑1 (MQ=60)
                                                                GATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAAT                             <  SRR4302532.3013499/94‑1 (MQ=60)
                                                                 ATATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATC                            >  SRR4302532.5527596/1‑94 (MQ=60)
                                                                  gcttgtcctttggtTCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCA                           >  SRR4302532.5414335/15‑94 (MQ=60)
                                                                  TGTTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCTGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCA                           >  SRR4302532.3615202/1‑94 (MQ=60)
                                                                   ATTAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCAT                          >  SRR4302532.857145/1‑94 (MQ=60)
                                                                     TAATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTA                        <  SRR4302532.2576874/94‑1 (MQ=60)
                                                                     TAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTA                        <  SRR4302532.2843819/94‑1 (MQ=60)
                                                                      AATACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTAT                       <  SRR4302532.1190046/94‑1 (MQ=60)
                                                                       ATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATT                      >  SRR4302532.2201252/1‑94 (MQ=60)
                                                                         TCAAAGATCCCCAGCAGGGCAGGTAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCC                    <  SRR4302532.3617380/94‑1 (MQ=60)
                                                                         ACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCC                    <  SRR4302532.532092/94‑1 (MQ=60)
                                                                         ACAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCC                    >  SRR4302532.651271/1‑94 (MQ=60)
                                                                         ACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGCTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCC                    <  SRR4302532.3617381/94‑1 (MQ=60)
                                                                          aaaacATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCA                   <  SRR4302532.2559139/89‑1 (MQ=60)
                                                                          CAAAGCTCCCCAGCAGGGCCGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTATGGCTTTGCGCATTGAAAAAATCATTATTCCA                   >  SRR4302532.605452/1‑94 (MQ=60)
                                                                          CAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCA                   >  SRR4302532.605453/1‑94 (MQ=60)
                                                                          CAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCA                   >  SRR4302532.1903848/1‑94 (MQ=60)
                                                                          CAAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCA                   <  SRR4302532.3305519/94‑1 (MQ=60)
                                                                          CAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCACTATTCCA                   <  SRR4302532.493778/94‑1 (MQ=60)
                                                                           AAAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCAG                  <  SRR4302532.1370144/94‑1 (MQ=60)
                                                                            AAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCAGT                 <  SRR4302532.6286668/94‑1 (MQ=60)
                                                                            AAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCAGT                 <  SRR4302532.5510482/94‑1 (MQ=60)
                                                                            AAGATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCAGT                 >  SRR4302532.6177075/1‑94 (MQ=60)
                                                                             AGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCAGTC                >  SRR4302532.357859/1‑94 (MQ=60)
                                                                               ATCCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCAGTCGT              >  SRR4302532.5278696/1‑94 (MQ=60)
                                                                               ATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCAGTCGT              >  SRR4302532.5967996/1‑94 (MQ=60)
                                                                               ATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCAGTCGT              >  SRR4302532.5065779/1‑94 (MQ=60)
                                                                                 CCCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCAGTCGTTT            >  SRR4302532.1260755/1‑94 (MQ=60)
                                                                                  CCCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCAGTCGTTTA           <  SRR4302532.4407316/94‑1 (MQ=60)
                                                                                  CCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCAGTCGTTTA           >  SRR4302532.3838450/1‑94 (MQ=60)
                                                                                   CCAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCAGTCGTTTAA          <  SRR4302532.1381489/94‑1 (MQ=60)
                                                                                    CAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCAGTCGTTTAAC         <  SRR4302532.661008/94‑1 (MQ=60)
                                                                                    CAGCAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCAGTCGTTTAAC         >  SRR4302532.4134635/1‑94 (MQ=60)
                                                                                    CAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCAGTCGTTTAAC         >  SRR4302532.4302382/1‑94 (MQ=60)
                                                                                     AGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCAGTCGTTTAACC        <  SRR4302532.648779/94‑1 (MQ=60)
                                                                                     AGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCAGTCGTTTAACC        <  SRR4302532.648780/94‑1 (MQ=60)
                                                                                       CAGGGCGGGGAAGCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCAGTCGTTTAACCAG      <  SRR4302532.5198121/94‑1 (MQ=60)
                                                                                       CAGGGCGGGGAACCAAAGGACAATGTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCAGTCGTTTAACCAG      <  SRR4302532.4642040/94‑1 (MQ=60)
                                                                                       CAGGGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCAGTCGTTTAACCAG      <  SRR4302532.600950/94‑1 (MQ=60)
                                                                                         GGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCAGTCGTTTAACCAGAC    >  SRR4302532.5738096/1‑94 (MQ=60)
                                                                                          GGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCAGTCGTTTAACCAGACC   <  SRR4302532.1430544/94‑1 (MQ=60)
                                                                                          GGCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCAGTCGTTTAACCAGACC   <  SRR4302532.1430543/94‑1 (MQ=60)
                                                                                           GCGGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCAGTCGTTTAACCAGACCT  >  SRR4302532.1416962/1‑94 (MQ=60)
                                                                                             |                                                                                           
GTAATCTGTTAACCATTCGCGCCAGCGAATAGTCAGTAGTTTAATTAACCATGTTTTGTTTACGGATATTAATACAAAGATCCCCAGCAGGGCAGGGAACCAAAGGACAAGCTGCCAAAGCTTATCGGTTTCTTTCTGGCTTAGCGCATTGAAAAAATCATTATTCCAGTCGTTTAACCAGACCT  >  NC_000913/1577037‑1577221

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑