Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTCTGTTTCTGAATGATTTTATTGAACAATTT  >  NC_000913/1614081‑1614266
                                                                                            |                                                                                             
AAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCC                                                                                              >  SRR4302532.427291/1‑94 (MQ=60)
  AGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCC                                                                                            <  SRR4302532.2565132/94‑1 (MQ=60)
  AGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCC                                                                                            >  SRR4302532.4883416/1‑94 (MQ=60)
   GAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCA                                                                                           >  SRR4302532.2205440/1‑94 (MQ=60)
       ATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCC                                                                                       >  SRR4302532.6321656/1‑94 (MQ=60)
       ATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCC                                                                                       >  SRR4302532.3802330/1‑94 (MQ=60)
        TATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCA                                                                                      >  SRR4302532.4042856/1‑94 (MQ=60)
        TATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCA                                                                                      >  SRR4302532.3673027/1‑94 (MQ=60)
        TATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCA                                                                                      >  SRR4302532.4535454/1‑94 (MQ=60)
         ATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAA                                                                                     >  SRR4302532.1718832/1‑94 (MQ=60)
           TGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAG                                                                                   >  SRR4302532.3559011/1‑94 (MQ=60)
           TGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAG                                                                                   >  SRR4302532.3430189/1‑94 (MQ=60)
           TGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAG                                                                                   >  SRR4302532.3430188/1‑94 (MQ=60)
            TAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGC                                                                                  <  SRR4302532.3929173/94‑1 (MQ=60)
            GAAGTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGC                                                                                  <  SRR4302532.3929174/94‑1 (MQ=60)
             AATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCC                                                                                 <  SRR4302532.4588513/94‑1 (MQ=60)
               TTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTG                                                                               >  SRR4302532.2830574/1‑94 (MQ=60)
                TTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGT                                                                              <  SRR4302532.3464257/94‑1 (MQ=60)
                  CAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCA                                                                            >  SRR4302532.6150340/1‑94 (MQ=60)
                  CAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCA                                                                            >  SRR4302532.2263280/1‑94 (MQ=60)
                     GTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTA                                                                         >  SRR4302532.2898966/1‑94 (MQ=60)
                      TAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTAT                                                                        <  SRR4302532.4163618/94‑1 (MQ=60)
                       AGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATG                                                                       >  SRR4302532.1225564/1‑94 (MQ=60)
                        GTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGG                                                                      >  SRR4302532.2243014/1‑94 (MQ=60)
                         TAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGG                                                                     >  SRR4302532.2375156/1‑94 (MQ=60)
                            TAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCG                                                                  <  SRR4302532.2094239/94‑1 (MQ=60)
                               ATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGT                                                               >  SRR4302532.1340056/1‑94 (MQ=60)
                                 TTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGTAT                                                             <  SRR4302532.6156446/94‑1 (MQ=60)
                                   AAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTT                                                           >  SRR4302532.2947189/1‑94 (MQ=60)
                                   AAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTT                                                           <  SRR4302532.2786758/94‑1 (MQ=60)
                                     GCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCA                                                         <  SRR4302532.3696438/94‑1 (MQ=60)
                                     GCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCA                                                         <  SRR4302532.1796338/94‑1 (MQ=60)
                                     GCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCA                                                         <  SRR4302532.1840877/94‑1 (MQ=60)
                                      CCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAG                                                        <  SRR4302532.2144595/94‑1 (MQ=60)
                                      CCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAG                                                        >  SRR4302532.8430/1‑94 (MQ=60)
                                      CCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAG                                                        >  SRR4302532.1866726/1‑94 (MQ=60)
                                      CCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAG                                                        >  SRR4302532.4996639/1‑94 (MQ=60)
                                       CCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGA                                                       <  SRR4302532.5861001/94‑1 (MQ=60)
                                        CTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGAC                                                      >  SRR4302532.4321353/1‑94 (MQ=60)
                                        CTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGAC                                                      >  SRR4302532.4321355/1‑94 (MQ=60)
                                        CTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGAC                                                      <  SRR4302532.3334845/94‑1 (MQ=60)
                                          ATTTATTTAGATAATTTTCGCCATGATGGAGTAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCG                                                    >  SRR4302532.2180283/1‑94 (MQ=60)
                                          ATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCG                                                    >  SRR4302532.4202480/1‑94 (MQ=60)
                                           TTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGG                                                   <  SRR4302532.6169927/94‑1 (MQ=60)
                                            TTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGC                                                  >  SRR4302532.1189609/1‑94 (MQ=60)
                                             TATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCG                                                 >  SRR4302532.2053923/1‑94 (MQ=60)
                                              ATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGT                                                <  SRR4302532.446932/94‑1 (MQ=60)
                                               TTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTC                                               >  SRR4302532.5565506/1‑94 (MQ=60)
                                               TTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGAACGGCGTC                                               >  SRR4302532.3578337/1‑94 (MQ=60)
                                                TTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCG                                              >  SRR4302532.5112484/1‑94 (MQ=60)
                                                TTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCG                                              >  SRR4302532.3462510/1‑94 (MQ=60)
                                                  AGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAG                                            >  SRR4302532.5726837/1‑94 (MQ=60)
                                                   GATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGC                                           <  SRR4302532.2195697/94‑1 (MQ=60)
                                                   GATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGC                                           >  SRR4302532.2793224/1‑94 (MQ=60)
                                                   GATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGC                                           <  SRR4302532.4066955/94‑1 (MQ=60)
                                                    ATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCG                                          >  SRR4302532.3777444/1‑94 (MQ=60)
                                                    ATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCG                                          <  SRR4302532.840463/94‑1 (MQ=60)
                                                      AATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTG                                        <  SRR4302532.340653/94‑1 (MQ=60)
                                                       ATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGT                                       >  SRR4302532.2295098/1‑94 (MQ=60)
                                                        TTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTA                                      <  SRR4302532.486044/94‑1 (MQ=60)
                                                        TTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTA                                      <  SRR4302532.486045/94‑1 (MQ=60)
                                                             GCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTT                                 <  SRR4302532.1229616/94‑1 (MQ=60)
                                                             GCCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTT                                 >  SRR4302532.5859570/1‑94 (MQ=60)
                                                              CCATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTT                                >  SRR4302532.2537131/1‑94 (MQ=60)
                                                               CATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTC                               >  SRR4302532.3987761/1‑94 (MQ=60)
                                                               CATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTC                               >  SRR4302532.3894457/1‑94 (MQ=60)
                                                               CATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTC                               >  SRR4302532.3894456/1‑94 (MQ=60)
                                                               CATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTC                               >  SRR4302532.1022108/1‑94 (MQ=60)
                                                               CATGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTC                               >  SRR4302532.1129544/1‑94 (MQ=60)
                                                                 TGATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTCTG                             >  SRR4302532.3286673/1‑94 (MQ=60)
                                                                  GATGGAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTCTGT                            >  SRR4302532.2935668/1‑94 (MQ=60)
                                                                   ATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTCTGTT                           <  SRR4302532.6199421/94‑1 (MQ=60)
                                                                      GAGAAATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTCTGTTTCT                        <  SRR4302532.2738027/94‑1 (MQ=60)
                                                                        GAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTCTGTTTCTGA                      >  SRR4302532.743063/1‑94 (MQ=60)
                                                                         AAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTCTGTTTCTGAA                     >  SRR4302532.3987461/1‑94 (MQ=60)
                                                                         AAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTCTGTTTCTGAA                     >  SRR4302532.2312599/1‑94 (MQ=60)
                                                                         AAATAAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTCTGTTTCTGAA                     <  SRR4302532.1477747/94‑1 (MQ=60)
                                                                           ATTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTCTGTTTCTGAATG                   <  SRR4302532.2157872/94‑1 (MQ=60)
                                                                            TTAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTCTGTTTCTGAATGA                  >  SRR4302532.2917476/1‑94 (MQ=60)
                                                                             TAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTCTGTTTCTGAATGAT                 <  SRR4302532.867649/94‑1 (MQ=60)
                                                                             TAATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTCTGTTTCTGAATGAT                 <  SRR4302532.421167/94‑1 (MQ=60)
                                                                              AATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTCTGTTTCTGAATGATT                >  SRR4302532.6162132/1‑94 (MQ=60)
                                                                              AATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGAGTGTACTCTTTCTGTTTCTGAATGATT                >  SRR4302532.299360/1‑94 (MQ=60)
                                                                               ATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTCTGTTTCTGAATGATTT               >  SRR4302532.112834/1‑94 (MQ=60)
                                                                               ATATTTTTTGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTCTGTTTCTGAATGATTT               <  SRR4302532.3916517/94‑1 (MQ=60)
                                                                                TATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTCTGTTTCTGAATGATTTT              <  SRR4302532.4767527/94‑1 (MQ=60)
                                                                                 ATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTCTGTTTCTGAATGATTTTT             >  SRR4302532.2878421/1‑94 (MQ=60)
                                                                                   TTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTCTGTTTCTGAATGATTTTATT           >  SRR4302532.2364545/1‑94 (MQ=60)
                                                                                       TGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTCTGTTTCTGAATGATTTTATTGAAC       <  SRR4302532.6038351/94‑1 (MQ=60)
                                                                                       TGCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTCTGTTTCTGAATGATTTTATTGAAC       <  SRR4302532.201476/94‑1 (MQ=60)
                                                                                        GCGCCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTCTGTTTCTGAATGATTTTATTGAACA      <  SRR4302532.5807740/94‑1 (MQ=60)
                                                                                         CGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTCTGTTTCTGAATGATTTTATTGAACAA     <  SRR4302532.4104328/94‑1 (MQ=60)
                                                                                           CTCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTCTGTTTCTGAATGATTTTATTGAAAAATT   >  SRR4302532.4724474/1‑94 (MQ=60)
                                                                                           CCCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTCTGTTTCTGAATGATTTTATTGAACAATT   >  SRR4302532.1308970/1‑94 (MQ=60)
                                                                                            CCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTCTGTTTCTGAATGATTTTATTGAACAATTT  >  SRR4302532.5167584/1‑94 (MQ=60)
                                                                                            CCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTCTGTTTCTGAATGATTTTATTGAACAATTT  >  SRR4302532.1919678/1‑94 (MQ=60)
                                                                                            CCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTCTGTTTCTGAATGATTTTATTGAACAATTT  >  SRR4302532.4905643/1‑94 (MQ=60)
                                                                                            |                                                                                             
AAAGAAAATATTGAATTTCAGGTAGTAATAAATTTAAGCCCTATTTATTTAGATAATTTTCGCCATGATGGAGAAATTAATATTTTTTGCGCTCCCAACCCAAAGCCTGTCACTATGGGGCGCGTATTTCAGACCGGCGTCGAGCGTGTACTCTTTCTGTTTCTGAATGATTTTATTGAACAATTT  >  NC_000913/1614081‑1614266

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑