Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAACGCGCGGGCAAACAGTCGCTGGA  >  NC_000913/1680839‑1681024
                                                                                            |                                                                                             
ACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTAC                                                                                              <  SRR4302532.3712913/94‑1 (MQ=60)
 CCTTATCGCATTAAAACTGTGCGTAACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCC                                                                                             >  SRR4302532.3163565/1‑94 (MQ=60)
       CGCATTAAAACTGTGCGTAACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTAT                                                                                       >  SRR4302532.2203099/1‑94 (MQ=60)
        GCATTAAAACTGTGCGTAACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATT                                                                                      <  SRR4302532.4022021/94‑1 (MQ=60)
         CATTAAAACTGTGCGTAACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTG                                                                                     >  SRR4302532.5837064/1‑94 (MQ=60)
         CATTAAAACTGTGCGTAACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTG                                                                                     >  SRR4302532.560939/1‑94 (MQ=60)
         CATTAAAACTGTGCGTAACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTG                                                                                     >  SRR4302532.560938/1‑94 (MQ=60)
          ATTAAAACTGTGCGTAACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGT                                                                                    >  SRR4302532.572493/1‑94 (MQ=60)
           TTAAAACTGTGCGTAACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTT                                                                                   >  SRR4302532.2364296/1‑94 (MQ=60)
           TTAAAACTGTGCGTAACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTT                                                                                   <  SRR4302532.1168931/94‑1 (MQ=60)
            TAAAACTGTGCGTAACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTT                                                                                  >  SRR4302532.403127/1‑94 (MQ=60)
             AAAACTGTGCGTAACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTG                                                                                 <  SRR4302532.4038828/94‑1 (MQ=60)
             AAAACTGTGCGTAACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTG                                                                                 >  SRR4302532.4107671/1‑94 (MQ=60)
             AAAACTGTGCGTAACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTG                                                                                 >  SRR4302532.4303111/1‑94 (MQ=60)
               AACTGTGCGTAACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTC                                                                               >  SRR4302532.5408523/1‑94 (MQ=60)
               AACTGTGCGTAACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTC                                                                               <  SRR4302532.2587005/94‑1 (MQ=60)
                 CTGTGCGTAACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTG                                                                             >  SRR4302532.4754911/1‑94 (MQ=60)
                 CTGTGCGTAACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTG                                                                             >  SRR4302532.4160931/1‑94 (MQ=60)
                    TGCGTAACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTT                                                                          <  SRR4302532.949886/94‑1 (MQ=60)
                    TGCGTAACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTT                                                                          <  SRR4302532.949887/94‑1 (MQ=60)
                     GCGTAACAAAGGCTATCTTTTTGCGCTTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTC                                                                         <  SRR4302532.4120807/94‑1 (MQ=60)
                     GCGTAACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTC                                                                         >  SRR4302532.1537687/1‑94 (MQ=60)
                     GCGTAACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTC                                                                         >  SRR4302532.4235307/1‑94 (MQ=60)
                     GCGTAACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTC                                                                         <  SRR4302532.3323140/94‑1 (MQ=60)
                     GCGTAACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTC                                                                         <  SRR4302532.2727579/94‑1 (MQ=60)
                      CGTAACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCC                                                                        >  SRR4302532.4050802/1‑94 (MQ=60)
                      CGTAACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCC                                                                        <  SRR4302532.5062161/94‑1 (MQ=60)
                         AACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTG                                                                     <  SRR4302532.5304383/94‑1 (MQ=60)
                          ACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGT                                                                    <  SRR4302532.6120177/94‑1 (MQ=60)
                            AAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGA                                                                  >  SRR4302532.4142499/1‑94 (MQ=60)
                            AAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGA                                                                  >  SRR4302532.1607145/1‑94 (MQ=60)
                             AAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGAT                                                                 <  SRR4302532.918446/94‑1 (MQ=60)
                             AAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGAT                                                                 <  SRR4302532.899349/94‑1 (MQ=60)
                             AAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGAT                                                                 <  SRR4302532.3060847/94‑1 (MQ=60)
                             AAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGAT                                                                 >  SRR4302532.1013320/1‑94 (MQ=60)
                                 CTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCT                                                             >  SRR4302532.3298882/1‑94 (MQ=60)
                                 CTATCGTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCT                                                             <  SRR4302532.847126/94‑1 (MQ=60)
                                   ATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCT                                                           >  SRR4302532.4371003/1‑94 (MQ=60)
                                   ATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCT                                                           <  SRR4302532.6218318/94‑1 (MQ=60)
                                   ATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCT                                                           <  SRR4302532.5249208/94‑1 (MQ=60)
                                    TCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTG                                                          <  SRR4302532.5773159/94‑1 (MQ=60)
                                     CTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGC                                                         >  SRR4302532.4627722/1‑94 (MQ=60)
                                     CTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGC                                                         >  SRR4302532.3902997/1‑94 (MQ=60)
                                     CTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGC                                                         >  SRR4302532.5476207/1‑94 (MQ=60)
                                      TTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCT                                                        <  SRR4302532.1065136/94‑1 (MQ=60)
                                      TTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCT                                                        <  SRR4302532.6260912/94‑1 (MQ=60)
                                      TTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCT                                                        <  SRR4302532.1287517/94‑1 (MQ=60)
                                      GTTTTGCGCCTCATGCATGTGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCT                                                        <  SRR4302532.3451673/94‑1 (MQ=60)
                                       TTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTG                                                       <  SRR4302532.2351816/94‑1 (MQ=60)
                                        TTTGCGTCTAATGCATGGTAATAAGCGAGGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTTTCTGCTTCCTTGTGATGTCTCTGCTGG                                                      <  SRR4302532.3885026/94‑1 (MQ=60)
                                        TTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGG                                                      <  SRR4302532.161569/94‑1 (MQ=60)
                                         TTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGT                                                     >  SRR4302532.4531846/1‑94 (MQ=60)
                                           TCGCCTTATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTG                                                   <  SRR4302532.1799693/94‑1 (MQ=60)
                                            ccgCTCATGCATGGGAATAAGCGCAGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGG                                                  <  SRR4302532.4644619/91‑1 (MQ=60)
                                            CGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGG                                                  <  SRR4302532.1194026/94‑1 (MQ=60)
                                            CGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGG                                                  >  SRR4302532.2422340/1‑94 (MQ=60)
                                            CGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGG                                                  >  SRR4302532.4797421/1‑94 (MQ=60)
                                             GCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGG                                                 <  SRR4302532.4169161/94‑1 (MQ=60)
                                               CTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCT                                               >  SRR4302532.3538767/1‑94 (MQ=60)
                                               CTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCT                                               >  SRR4302532.5812836/1‑94 (MQ=60)
                                               CTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCT                                               <  SRR4302532.4000802/94‑1 (MQ=60)
                                                 CATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGG                                             >  SRR4302532.2329852/1‑94 (MQ=60)
                                                    GCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGCTGGGCTGGTGT                                          >  SRR4302532.3084227/1‑94 (MQ=60)
                                                     CATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTA                                         >  SRR4302532.3269421/1‑94 (MQ=60)
                                                      ATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTAC                                        <  SRR4302532.2395981/94‑1 (MQ=60)
                                                       TGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACA                                       >  SRR4302532.3373658/1‑94 (MQ=60)
                                                          GAATAAGCGATGAAAAAACTGTTTATCCAGCTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAAT                                    <  SRR4302532.6217473/94‑1 (MQ=60)
                                                           AATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATT                                   <  SRR4302532.3334942/94‑1 (MQ=60)
                                                           AATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATT                                   >  SRR4302532.590645/1‑94 (MQ=60)
                                                             TAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTA                                 <  SRR4302532.4441848/94‑1 (MQ=60)
                                                                GCGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCG                              <  SRR4302532.3630231/94‑1 (MQ=60)
                                                                GCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCG                              <  SRR4302532.3091519/94‑1 (MQ=60)
                                                                 CGATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGC                             >  SRR4302532.349352/1‑94 (MQ=60)
                                                                  GATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTCGTGCACACATTTACCGCC                            >  SRR4302532.2467216/1‑94 (MQ=60)
                                                                  GATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCC                            >  SRR4302532.4166069/1‑94 (MQ=60)
                                                                   ATTAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCG                           <  SRR4302532.4934788/94‑1 (MQ=60)
                                                                   ATGAAAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCG                           >  SRR4302532.6202296/1‑94 (MQ=60)
                                                                     GAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAA                         >  SRR4302532.2979887/1‑94 (MQ=60)
                                                                      AAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAAC                        <  SRR4302532.4527832/94‑1 (MQ=60)
                                                                      AAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAAC                        <  SRR4302532.3955947/94‑1 (MQ=60)
                                                                      AAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAAC                        >  SRR4302532.3410711/1‑94 (MQ=60)
                                                                      AAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAAC                        <  SRR4302532.1953854/94‑1 (MQ=60)
                                                                       AAAAACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAACG                       >  SRR4302532.5247569/1‑94 (MQ=60)
                                                                           ACTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAACGCGCG                   <  SRR4302532.5705786/94‑1 (MQ=60)
                                                                           ACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAACGCGCG                   >  SRR4302532.1388791/1‑94 (MQ=60)
                                                                            CTGTTTATCCGGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAACGCGCGG                  <  SRR4302532.6037482/94‑1 (MQ=60)
                                                                            CTGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAACGCGCGG                  >  SRR4302532.1829606/1‑94 (MQ=60)
                                                                             TGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAACGCGCGGG                 >  SRR4302532.3623308/1‑94 (MQ=60)
                                                                             TGTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAACGCGCGGG                 >  SRR4302532.3208174/1‑94 (MQ=60)
                                                                              GTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAACGCGCGGGC                <  SRR4302532.4340872/94‑1 (MQ=60)
                                                                              GTTTATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAACGCGCGGGC                <  SRR4302532.1134814/94‑1 (MQ=60)
                                                                                 TATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAACGCGCGGGCAAA             >  SRR4302532.5948300/1‑94 (MQ=60)
                                                                                 TATCCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAACGCGCGGGCAAA             >  SRR4302532.4779598/1‑94 (MQ=60)
                                                                                 TATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAACGCGCGGGCAAA             >  SRR4302532.4629948/1‑94 (MQ=60)
                                                                                    CCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAACGCGCGGGCAAACAG          >  SRR4302532.6086162/1‑94 (MQ=60)
                                                                                    CCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAACGCGCGGGCAAACAG          >  SRR4302532.6086164/1‑94 (MQ=60)
                                                                                    CCAGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAACGCGCGGGCAAACAG          <  SRR4302532.1866883/94‑1 (MQ=60)
                                                                                     CAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAACGCGCGGGCAAACAGT         <  SRR4302532.1964810/94‑1 (MQ=60)
                                                                                      AGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAACGCGCGGGCAAACAGTC        >  SRR4302532.5268566/1‑94 (MQ=60)
                                                                                      AGTTTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAACGCGCGGGCAAACAGTC        <  SRR4302532.4176354/94‑1 (MQ=60)
                                                                                      AGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTTCCGCCGAACGCGCGGGCAAACAGTC        <  SRR4302532.3031458/94‑1 (MQ=60)
                                                                                      AGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAACGCGCGGGCAAACAGTC        >  SRR4302532.637284/1‑94 (MQ=60)
                                                                                         TTTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAACGCGCGGGCAAACAGTCGCT     <  SRR4302532.909647/94‑1 (MQ=60)
                                                                                         TTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAACGCGCGGGCAAACAGTCGCT     >  SRR4302532.6082222/1‑94 (MQ=60)
                                                                                          TTGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAACGCGCGGGCAAACAGTCGCTG    >  SRR4302532.392489/1‑94 (MQ=60)
                                                                                          TTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTATAAATTTACCGCCGAACGCGCGGGCAAACAGTCGCTG    >  SRR4302532.5994079/1‑94 (MQ=60)
                                                                                          TTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAACGCGCGGGCAAACAGTCGCTG    >  SRR4302532.6230204/1‑94 (MQ=60)
                                                                                           TGCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAACGCGCGGGCAAACAGTCGCTGG   <  SRR4302532.3969867/94‑1 (MQ=60)
                                                                                            TCCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAACGCGCGGGCAAACAGTCGCTGGA  <  SRR4302532.4999590/94‑1 (MQ=60)
                                                                                            ACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAACGCGCGGGCAAACAGTCGCTGGA  >  SRR4302532.5967074/1‑94 (MQ=60)
                                                                                            |                                                                                             
ACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTATCTTTTTGCGCCTCATGCATGGGAATAAGCGATGAAAAAACTGTTTATCCAGTTTTACCTGTTATTGTTTGTCTGCTTCCTTGTGATGTCTCTGCTGGTTGGGCTGGTGTACAAATTTACCGCCGAACGCGCGGGCAAACAGTCGCTGGA  >  NC_000913/1680839‑1681024

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑