Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,690,632 |
A→G |
Y78H (TAT→CAT) |
uidC ← |
membrane‑associated protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,690,632 | 0 | A | G | 98.1%
| 556.4
/ ‑3.8
| 161 | Y78H (TAT→CAT) | uidC | membrane‑associated protein |
| Reads supporting (aligned to +/- strand): ref base A (0/3); new base G (77/81); total (77/84) |
| Fisher's exact test for biased strand distribution p-value = 2.47e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 169 total aligned reads displayed.
CTGCCCCCAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATACGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAATATCTCTTC > NC_000913/1690542‑1690721
|
cTGCCCCCAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCg > 1:775330/1‑93 (MQ=255)
gCCCCCAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGcc > 1:1982506/1‑93 (MQ=255)
ccccAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGcccc > 1:4889896/1‑93 (MQ=255)
cccAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCg > 1:84623/1‑93 (MQ=255)
cccAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCg > 2:4510019/1‑93 (MQ=255)
ccAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGc > 2:3894414/1‑93 (MQ=255)
cAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGcc > 1:84907/1‑93 (MQ=255)
cAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGcc < 1:3636243/93‑1 (MQ=255)
gggCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCtt > 2:2094114/1‑93 (MQ=255)
ggCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTc > 2:2219370/1‑93 (MQ=255)
ggCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTc > 1:194439/1‑93 (MQ=255)
gCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCa > 1:5898982/1‑93 (MQ=255)
gCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCa > 2:488263/1‑93 (MQ=255)
cAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCaa < 1:1439950/93‑1 (MQ=255)
cAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCaa < 1:5826950/93‑1 (MQ=255)
cAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCaa < 1:3455560/93‑1 (MQ=255)
cAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCaa > 1:5314222/1‑93 (MQ=255)
cAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCaa > 2:4924299/1‑93 (MQ=255)
cAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCaa > 2:4577237/1‑93 (MQ=255)
aaaGCCAAACCTTTTATCACCATCAAGATACCACCGGGTACTCAGATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAAc > 2:3142973/1‑93 (MQ=255)
aaaGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAAc < 2:3800760/93‑1 (MQ=255)
aaaGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAAc > 1:923511/1‑93 (MQ=255)
aaGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACg > 1:4835316/1‑93 (MQ=255)
aaGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACg > 2:4502064/1‑93 (MQ=255)
aaGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCGAATTTATAAACATAATGCGCCCCGCCTTCAACg > 2:5956674/1‑93 (MQ=255)
gCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGcc < 1:4572137/93‑1 (MQ=255)
cAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCaa > 1:510736/1‑93 (MQ=255)
cAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCaa < 2:806176/93‑1 (MQ=255)
aaaaCTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCaat < 2:6100279/93‑1 (MQ=255)
aaaaCTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCaat > 1:2343578/1‑93 (MQ=255)
aaaaCTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTAAACGCCagt > 1:307790/1‑91 (MQ=255)
aaaCTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCaata > 2:4496503/1‑93 (MQ=255)
aaaCTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCaata < 2:5806297/93‑1 (MQ=255)
aaCTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCaataa > 2:1917559/1‑93 (MQ=255)
aaCTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCaataa < 2:6139704/93‑1 (MQ=255)
cTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAataata < 1:4470452/93‑1 (MQ=255)
cTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAataata < 2:5719321/93‑1 (MQ=255)
cTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAataata < 2:2893596/93‑1 (MQ=255)
ttttATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAatat > 1:4638012/1‑93 (MQ=255)
ttttATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAatat < 1:5522597/93‑1 (MQ=255)
gttATCACCATCAGCATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATACGCCCCGCCTTCAACGCCAATAATAtt < 2:3205555/92‑1 (MQ=255)
tATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTgg > 2:814848/1‑93 (MQ=255)
aTCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGa < 2:2343161/93‑1 (MQ=255)
cACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGaat < 2:2210173/93‑1 (MQ=255)
cACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGaat < 1:353246/93‑1 (MQ=255)
cACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGaat < 2:2601591/93‑1 (MQ=255)
cATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGaataat > 2:1397516/1‑93 (MQ=255)
cATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGaataat > 1:1448709/1‑93 (MQ=255)
aTCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAataata > 1:5791972/1‑93 (MQ=255)
aaGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAAcc > 2:5590210/1‑93 (MQ=255)
aaGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAAcc < 2:5390047/93‑1 (MQ=255)
gATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCAc < 2:2614781/93‑1 (MQ=255)
gATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCAc < 2:5105548/93‑1 (MQ=255)
gATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCAc > 1:4928845/1‑93 (MQ=255)
tACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACTTAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTa > 2:868860/1‑93 (MQ=255)
tACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTa < 2:5983025/93‑1 (MQ=255)
tACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTa < 1:428933/93‑1 (MQ=255)
tACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTa < 2:31402/93‑1 (MQ=255)
caccGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTg > 2:3733982/1‑93 (MQ=255)
accGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGa < 2:1787772/93‑1 (MQ=255)
accGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGa > 1:3407022/1‑93 (MQ=255)
cGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGaaa < 1:4545517/93‑1 (MQ=255)
ggTACTCATATCAGCACGAGCACCTAATTTATAAACATAATACGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCGCTATTGAAATc < 2:1175856/93‑1 (MQ=255)
gTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCg < 1:3621464/93‑1 (MQ=255)
tACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGa < 2:646409/93‑1 (MQ=255)
tcTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAg < 1:3883224/92‑1 (MQ=255)
aCTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAg < 2:3263816/93‑1 (MQ=255)
aCTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAg > 2:4871086/1‑93 (MQ=255)
cTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGc > 1:3096411/1‑93 (MQ=255)
tCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCa > 1:4582941/1‑93 (MQ=255)
cATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCaa > 1:4451265/1‑93 (MQ=255)
cATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCaa < 1:1541343/93‑1 (MQ=255)
atatCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAAt > 1:1458402/1‑93 (MQ=255)
tCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAAtcct < 1:1055793/93‑1 (MQ=255)
cAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAAtcctc < 1:4182465/93‑1 (MQ=255)
aGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAAtcctcc < 2:466856/93‑1 (MQ=255)
cGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGt < 2:586577/93‑1 (MQ=255)
cGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGt > 1:5978881/1‑93 (MQ=255)
gAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTa < 1:3310720/93‑1 (MQ=255)
gCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTAcc > 1:4011137/1‑93 (MQ=255)
gCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTAcc > 1:2984246/1‑93 (MQ=255)
cACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTAccc > 2:5680213/1‑93 (MQ=255)
aCCTAATTTATAAACATAATGCGCCTCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCa < 2:1303922/93‑1 (MQ=255)
aCCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCa < 2:3233968/93‑1 (MQ=255)
aaTTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCg > 2:2095121/1‑93 (MQ=255)
tttATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTa > 2:3490922/1‑93 (MQ=255)
tttATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTa > 1:247769/1‑93 (MQ=255)
ttATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTaa > 2:5845285/1‑93 (MQ=255)
tataACCATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTaaa < 1:2578949/93‑1 (MQ=255)
tataAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTaaa > 2:183532/1‑93 (MQ=255)
ataAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAat > 2:4110057/1‑93 (MQ=255)
taAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAata < 2:2701403/93‑1 (MQ=255)
taAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAata < 2:2379357/93‑1 (MQ=255)
taAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAata > 2:850942/1‑93 (MQ=255)
aCATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAATAtct < 1:646533/93‑1 (MQ=255)
cATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAATAtctc > 1:5654335/1‑93 (MQ=255)
cATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAATAtctc < 1:2763370/93‑1 (MQ=255)
ataatgCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAATATctct < 2:74054/93‑1 (MQ=255)
taatgCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAATATCTCtt < 1:5375056/93‑1 (MQ=255)
aatgCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAATATCTCTTc > 1:1114904/1‑93 (MQ=255)
|
CTGCCCCCAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATACGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAATATCTCTTC > NC_000913/1690542‑1690721
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TTACTGCCCCCAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATACGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAATATCTCTTCCC > NC_000913/1690539‑1690723
|
TTACTGCCCCCAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATG < SRR4302532.471279/94‑1 (MQ=60)
ACTGCCCCCAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCG > SRR4302532.802033/1‑94 (MQ=60)
CTGCCCCCAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGC < SRR4302532.996572/94‑1 (MQ=60)
CTGCCCCCAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGC > SRR4302532.2551763/1‑94 (MQ=60)
TGCCCCCAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCC > SRR4302532.2048379/1‑94 (MQ=60)
CCCCCAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCC > SRR4302532.5057953/1‑94 (MQ=60)
CCCCAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCG > SRR4302532.87617/1‑94 (MQ=60)
CCCCAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCG > SRR4302532.5052621/1‑94 (MQ=60)
CCCAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGC < SRR4302532.773181/94‑1 (MQ=60)
CCAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCC > SRR4302532.87907/1‑94 (MQ=60)
CAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCT < SRR4302532.3758238/94‑1 (MQ=60)
AGGGCAAAGCCAAAACTTATATCACCATCGAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTT < SRR4302532.1747942/94‑1 (MQ=60)
GGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTC > SRR4302532.201009/1‑94 (MQ=60)
GGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCA < SRR4302532.3689557/94‑1 (MQ=60)
GGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCA > SRR4302532.6103258/1‑94 (MQ=60)
GCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAA > SRR4302532.5498035/1‑94 (MQ=60)
CAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAAC > SRR4302532.955161/1‑94 (MQ=60)
CAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAAC < SRR4302532.3571288/94‑1 (MQ=60)
CAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAAC > SRR4302532.2330760/1‑94 (MQ=60)
CAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAAC < SRR4302532.1488474/94‑1 (MQ=60)
CAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAAC < SRR4302532.6029271/94‑1 (MQ=60)
AAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACG > SRR4302532.3440919/1‑94 (MQ=60)
AAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACG > SRR4302532.5001749/1‑94 (MQ=60)
GCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCA < SRR4302532.4728072/94‑1 (MQ=60)
CCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAA > SRR4302532.528581/1‑94 (MQ=60)
CAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAAT > SRR4302532.2421709/1‑94 (MQ=60)
CAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAAT > SRR4302532.318461/1‑94 (MQ=60)
CAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTAAACGCCAGT > SRR4302532.318460/1‑94 (MQ=60)
AACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAAT < SRR4302532.1496475/94‑1 (MQ=60)
CTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATAT > SRR4302532.4796139/1‑94 (MQ=60)
CTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATAT < SRR4302532.4622882/94‑1 (MQ=60)
TTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATT < SRR4302532.5714236/94‑1 (MQ=60)
TTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATT > SRR4302532.1694505/1‑94 (MQ=60)
TTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTG > SRR4302532.4046132/1‑94 (MQ=60)
TTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGG < SRR4302532.871342/94‑1 (MQ=60)
ATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAA > SRR4302532.1261203/1‑94 (MQ=60)
CACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATA < SRR4302532.365473/94‑1 (MQ=60)
CACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATA < SRR4302532.6014366/94‑1 (MQ=60)
CCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAAT > SRR4302532.1497551/1‑94 (MQ=60)
CATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATA > SRR4302532.5993333/1‑94 (MQ=60)
AAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCA < SRR4302532.4589167/94‑1 (MQ=60)
AGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCAC > SRR4302532.5098097/1‑94 (MQ=60)
AGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCAC < SRR4302532.437039/94‑1 (MQ=60)
TACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTAT < SRR4302532.443789/94‑1 (MQ=60)
TACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATACGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTAT < SRR4302532.5711846/94‑1 (MQ=60)
CACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGA > SRR4302532.3521105/1‑94 (MQ=60)
CACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGA > SRR4302532.5394006/1‑94 (MQ=60)
CCCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAGCCACTATTGAA < SRR4302532.5221802/94‑1 (MQ=60)
ACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAA > SRR4302532.153089/1‑94 (MQ=60)
CGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAAT < SRR4302532.4700667/94‑1 (MQ=60)
GTACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGA < SRR4302532.3742755/94‑1 (MQ=60)
TCTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGC < SRR4302532.4014284/94‑1 (MQ=60)
ACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGC > SRR4302532.3199077/1‑94 (MQ=60)
ACTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGA > SRR4302532.3199078/1‑94 (MQ=60)
CTCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCA > SRR4302532.4739198/1‑94 (MQ=60)
TCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAA > SRR4302532.6244659/1‑94 (MQ=60)
TCATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAA > SRR4302532.4602972/1‑94 (MQ=60)
CATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAAT < SRR4302532.1593432/94‑1 (MQ=60)
CATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAAT > SRR4302532.1507563/1‑94 (MQ=60)
ATATCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATC > SRR4302532.4721135/1‑94 (MQ=60)
TCAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTC < SRR4302532.1091376/94‑1 (MQ=60)
CAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCC < SRR4302532.4322762/94‑1 (MQ=60)
CAGCACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCC > SRR4302532.6085893/1‑94 (MQ=60)
ACGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGT > SRR4302532.6185508/1‑94 (MQ=60)
CGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTA < SRR4302532.88006/94‑1 (MQ=60)
CGAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTA < SRR4302532.2979871/94‑1 (MQ=60)
GAGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTAC < SRR4302532.3421092/94‑1 (MQ=60)
AGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACC > SRR4302532.4146295/1‑94 (MQ=60)
AGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACC > SRR4302532.3082923/1‑94 (MQ=60)
AGCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACC > SRR4302532.3792312/1‑94 (MQ=60)
GCACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCC < SRR4302532.2790643/94‑1 (MQ=60)
CACCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCA < SRR4302532.4682320/94‑1 (MQ=60)
CCTAATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATG > SRR4302532.4833510/1‑94 (MQ=60)
ATTTATAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTA > SRR4302532.256376/1‑94 (MQ=60)
TATAACCATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAAT < SRR4302532.2665120/94‑1 (MQ=60)
TAAACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAATAT < SRR4302532.3643138/94‑1 (MQ=60)
AACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAATATCT > SRR4302532.5736418/1‑94 (MQ=60)
ACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAATATCTC < SRR4302532.4732903/94‑1 (MQ=60)
ACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAATATCTC < SRR4302532.668980/94‑1 (MQ=60)
ACATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAATATCTC > SRR4302532.5851188/1‑94 (MQ=60)
CATAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAATATCTCT < SRR4302532.2856154/94‑1 (MQ=60)
TAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAATATCTCTTC < SRR4302532.5561274/94‑1 (MQ=60)
TAATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAATATCTCTTC > SRR4302532.1152155/1‑94 (MQ=60)
AATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAATATCTCTTCC > SRR4302532.897026/1‑94 (MQ=60)
ATGCGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAATATCTCTTCCC < SRR4302532.4216425/94‑1 (MQ=60)
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TTACTGCCCCCAGGGCAAAGCCAAAACTTTTATCACCATCAAGATACCACCGGGTACTCATATCAGCACGAGCACCTAATTTATAAACATAATACGCCCCGCCTTCAACGCCAATAATATTGGAATAATAACCACTATTGAAATCGAGCAATCCTCCCTGTACCCATGCGTAAATATCTCTTCCC > NC_000913/1690539‑1690723
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
