Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,692,491 G→A R535R (CGC→CGT)  uidA ← beta‑D‑glucuronidase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,692,4910GA99.5% 734.6 / ‑5.8 196R535R (CGC→CGT) uidAbeta‑D‑glucuronidase
Reads supporting (aligned to +/- strand):  ref base G (1/0);  new base A (97/98);  total (98/98)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 199 total aligned reads displayed.

CCGCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACGCGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCACGCC  >  NC_000913/1692402‑1692580
                                                                                         |                                                                                         
ccGCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACgg                                                                                        >  2:2970426/1‑93 (MQ=255)
ccGCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACgg                                                                                        >  1:864619/1‑93 (MQ=255)
 cGCCAACGCGCAATATGCCTGGCGAGGTCGCAAAATCGGCGAAATTCCATGCCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGt                                                                                       <  1:469786/93‑1 (MQ=255)
  gCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGACCAAAGACACggag                                                                                      >  2:3252168/1‑91 (MQ=255)
   ccAACGCGCAATATGCCTTGCGAGGTCGCAAAATCCGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGa                                                                                     <  1:1727797/93‑1 (MQ=255)
    cAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGAt                                                                                    <  2:5434855/93‑1 (MQ=255)
    cAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGAt                                                                                    <  1:1715883/93‑1 (MQ=255)
    cAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGAt                                                                                    >  1:5980921/1‑93 (MQ=255)
     aaCGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATa                                                                                   >  2:2334888/1‑93 (MQ=255)
      aCGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATAc                                                                                  >  2:1132483/1‑93 (MQ=255)
      aCGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATAc                                                                                  <  2:2059282/93‑1 (MQ=255)
       cgcgCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACa                                                                                 <  2:3599045/93‑1 (MQ=255)
       cgcgCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACa                                                                                 >  1:5254874/1‑93 (MQ=255)
       cgcgCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACa                                                                                 >  1:2811305/1‑93 (MQ=255)
       cgcgCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACa                                                                                 <  2:3081807/93‑1 (MQ=255)
        gcgcAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACat                                                                                >  1:4933043/1‑93 (MQ=255)
         cgcAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACata                                                                               <  2:4528544/93‑1 (MQ=255)
          gcAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACatat                                                                              >  1:3307773/1‑93 (MQ=255)
          gcAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACatat                                                                              <  2:5685879/93‑1 (MQ=255)
            aaTATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATcc                                                                            >  1:4327443/1‑93 (MQ=255)
            aaTATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATcc                                                                            <  2:1294362/93‑1 (MQ=255)
            aaTATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATcc                                                                            <  1:425298/93‑1 (MQ=255)
            aaTATGCCTTGCGAGGTCGCAAAATCGGAGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATcc                                                                            >  2:1351853/1‑93 (MQ=255)
              tatGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAg                                                                          <  2:3936236/93‑1 (MQ=255)
              tatGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAg                                                                          >  2:4081368/1‑93 (MQ=255)
                 gCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCa                                                                       <  2:2134790/93‑1 (MQ=255)
                 gCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCa                                                                       <  1:147933/93‑1 (MQ=255)
                  ccTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCAt                                                                      <  1:3901716/93‑1 (MQ=255)
                   cTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATg                                                                     <  2:1153172/93‑1 (MQ=255)
                   cTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATg                                                                     >  1:2607025/1‑93 (MQ=255)
                   cTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATg                                                                     <  1:2242038/93‑1 (MQ=255)
                    ttGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGc                                                                    >  2:2388518/1‑93 (MQ=255)
                    ttGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGc                                                                    >  2:1569995/1‑93 (MQ=255)
                     tGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGca                                                                   <  2:4925376/93‑1 (MQ=255)
                        gAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCacac                                                                <  2:3906424/93‑1 (MQ=255)
                        gAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCacac                                                                >  2:691539/1‑93 (MQ=255)
                        gAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCacac                                                                <  1:1369594/93‑1 (MQ=255)
                         aGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACt                                                               >  1:4716696/1‑93 (MQ=255)
                          ggTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTg                                                              >  2:2769235/1‑93 (MQ=255)
                            gcGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGAt                                                            <  2:4695817/92‑1 (MQ=255)
                             cGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATa                                                           <  2:2549587/93‑1 (MQ=255)
                              gtaaaaTCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATAc                                                          <  1:5328887/91‑1 (MQ=255)
                              gCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATAc                                                          >  2:2715314/1‑93 (MQ=255)
                              gCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATAc                                                          >  1:5723303/1‑93 (MQ=255)
                              gCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATAc                                                          <  1:5781196/93‑1 (MQ=255)
                              gCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATAc                                                          >  2:4721003/1‑93 (MQ=255)
                              gCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATAc                                                          <  1:3448276/93‑1 (MQ=255)
                                  aaTCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGTGACATATCCAGCCATTCACACTGATACTCtt                                                      >  1:3446020/1‑93 (MQ=255)
                                  aaTCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCtt                                                      >  2:3725857/1‑93 (MQ=255)
                                     cGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCAc                                                   <  1:2774870/93‑1 (MQ=255)
                                      ggCGAAATTCCATACCTGTTCACCGACGACGGCGCTGAAGCGATCAAAGACACGCTGATACATATCCAGCCATGCACACCGAGACTTTTCAcc                                                  >  2:1926337/1‑92 (MQ=255)
                                           aaTTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCcaca                                             >  1:3107318/1‑93 (MQ=255)
                                           aaTTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCcaca                                             <  1:6024079/93‑1 (MQ=255)
                                           aaTTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCcaca                                             <  1:1911698/93‑1 (MQ=255)
                                             ttCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATg                                           >  1:352477/1‑93 (MQ=255)
                                              tCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGt                                          >  2:2454569/1‑93 (MQ=255)
                                               ccATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTc                                         >  2:4486162/1‑93 (MQ=255)
                                               ccATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTc                                         <  1:5819926/93‑1 (MQ=255)
                                               ccATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTc                                         <  2:5848606/93‑1 (MQ=255)
                                                cATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCg                                        <  1:2191174/93‑1 (MQ=255)
                                                cATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCg                                        >  2:6097881/1‑93 (MQ=255)
                                                cATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCg                                        >  2:5606859/1‑93 (MQ=255)
                                                 aTACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCgg                                       >  2:5288476/1‑93 (MQ=255)
                                                  tACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGgt                                      <  1:2274090/93‑1 (MQ=255)
                                                  tACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGgt                                      >  1:1600984/1‑93 (MQ=255)
                                                  tACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGgt                                      <  1:4204070/93‑1 (MQ=255)
                                                   aCCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGgtg                                     <  2:5634804/93‑1 (MQ=255)
                                                   aCCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGgtg                                     >  1:5060369/1‑93 (MQ=255)
                                                    ccTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGgtga                                    >  1:1583880/1‑92 (MQ=255)
                                                      tGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTAc                                  >  2:851531/1‑93 (MQ=255)
                                                      tGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTAc                                  >  1:320647/1‑93 (MQ=255)
                                                       gTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACa                                 >  2:3183116/1‑93 (MQ=255)
                                                       gTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACa                                 <  2:1855769/93‑1 (MQ=255)
                                                        ttCCCCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACAt                                <  1:2930416/93‑1 (MQ=255)
                                                        ttCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACAt                                <  1:2081644/93‑1 (MQ=255)
                                                        ctCACCGACGACGGCGCTGACGCGATCAAATACGCGGGGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGCTGTACAt                                >  1:1162319/2‑93 (MQ=255)
                                                           aCCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGa                             >  2:2802775/1‑93 (MQ=255)
                                                           aCCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGa                             >  1:4596375/1‑93 (MQ=255)
                                                               acgacgGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGc                         <  1:4770330/93‑1 (MQ=255)
                                                                 gacgGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAg                       >  1:3817823/1‑93 (MQ=255)
                                                                  acgGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGc                      >  1:1102284/1‑93 (MQ=255)
                                                                  acgGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGc                      >  2:3263173/1‑93 (MQ=255)
                                                                   cgGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGcc                     >  1:4494700/1‑93 (MQ=255)
                                                                    ggCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGccc                    <  1:1491441/93‑1 (MQ=255)
                                                                     gcgcTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCg                   <  2:3474808/93‑1 (MQ=255)
                                                                       gcTGACGCGATCAAAGACACGGTGATACAGATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGc                 <  2:5153308/93‑1 (MQ=255)
                                                                        cTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCt                >  2:224635/1‑93 (MQ=255)
                                                                         tGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTa               >  1:1813717/1‑93 (MQ=255)
                                                                          gACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATTCTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTaa              <  2:2174348/93‑1 (MQ=255)
                                                                               gATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTAt         >  1:4012182/1‑93 (MQ=255)
                                                                               gATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTAt         >  2:5599855/1‑93 (MQ=255)
                                                                                 tCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATcc       >  1:738779/1‑93 (MQ=255)
                                                                                 tCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATcc       >  2:1993603/1‑93 (MQ=255)
                                                                                  cAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCa      <  2:2475214/93‑1 (MQ=255)
                                                                                  cAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCa      <  1:2366090/93‑1 (MQ=255)
                                                                                  cAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCa      >  2:3244839/1‑93 (MQ=255)
                                                                                   aaaGACGCGGTGAGACATATCCAGCCATGCCCCCTAATCCTCTTCACTCCACATGTCGGTGTACCTTGAGTGCAGCCCGGCTAACGTATcccc     <  2:2632797/93‑3 (MQ=255)
                                                                                   aaaGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCAc     <  2:5973006/93‑1 (MQ=255)
                                                                                     aGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCACGc   >  1:3696088/1‑93 (MQ=255)
                                                                                     aGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCACGc   <  2:1044337/93‑1 (MQ=255)
                                                                                         |                                                                                         
CCGCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACGCGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCACGCC  >  NC_000913/1692402‑1692580

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTACCGCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACGCGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCACGCCGTAT  >  NC_000913/1692399‑1692584
                                                                                            |                                                                                             
TTACCGCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACAC                                                                                              <  SRR4302532.5987804/94‑1 (MQ=60)
  ACCGCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGG                                                                                            >  SRR4302532.894270/1‑94 (MQ=60)
  ACCGCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGG                                                                                            >  SRR4302532.2302628/1‑94 (MQ=60)
  ACCGCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGG                                                                                            >  SRR4302532.6190918/1‑94 (MQ=60)
  ACCGCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGG                                                                                            >  SRR4302532.5504962/1‑94 (MQ=60)
   CCGCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGT                                                                                           <  SRR4302532.1536158/94‑1 (MQ=60)
    CGCCAACGCGCAATATGCCTGGCGAGGTCGCAAAATCGGCGAAATTCCATGCCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTG                                                                                          <  SRR4302532.486148/94‑1 (MQ=60)
     GCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGA                                                                                         >  SRR4302532.5972892/1‑94 (MQ=60)
      CCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGAT                                                                                        >  SRR4302532.6187599/1‑94 (MQ=60)
      CCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCCGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGAT                                                                                        <  SRR4302532.1785973/94‑1 (MQ=60)
       CAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATA                                                                                       <  SRR4302532.1773721/94‑1 (MQ=60)
         ACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACA                                                                                     >  SRR4302532.5436055/1‑94 (MQ=60)
         ACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACA                                                                                     >  SRR4302532.2905428/1‑94 (MQ=60)
          CGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACAT                                                                                    >  SRR4302532.5102430/1‑94 (MQ=60)
           GCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATA                                                                                   <  SRR4302532.3017465/94‑1 (MQ=60)
            CGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATAT                                                                                  >  SRR4302532.3417978/1‑94 (MQ=60)
             GCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATC                                                                                 >  SRR4302532.3378098/1‑94 (MQ=60)
              CAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCCAATACACGGTGATACATATCC                                                                                >  SRR4302532.5268978/1‑94 (MQ=60)
              CAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCC                                                                                >  SRR4302532.4473657/1‑94 (MQ=60)
               AATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCA                                                                               <  SRR4302532.440032/94‑1 (MQ=60)
               AATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCA                                                                               >  SRR4302532.2463988/1‑94 (MQ=60)
                ATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAG                                                                              >  SRR4302532.354618/1‑94 (MQ=60)
                  ATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCC                                                                            >  SRR4302532.2022906/1‑94 (MQ=60)
                    GCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCAT                                                                          <  SRR4302532.152894/94‑1 (MQ=60)
                    GCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCAT                                                                          <  SRR4302532.1221404/94‑1 (MQ=60)
                    GCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCAT                                                                          <  SRR4302532.1778099/94‑1 (MQ=60)
                     CCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATG                                                                         >  SRR4302532.2694211/1‑94 (MQ=60)
                     CCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATG                                                                         <  SRR4302532.4033304/94‑1 (MQ=60)
                      CTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGC                                                                        <  SRR4302532.2316444/94‑1 (MQ=60)
                      CTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGC                                                                        <  SRR4302532.2316445/94‑1 (MQ=60)
                           GAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACT                                                                   >  SRR4302532.4877624/1‑94 (MQ=60)
                           GAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACT                                                                   <  SRR4302532.1415473/94‑1 (MQ=60)
                             GGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGA                                                                 <  SRR4302532.1902649/94‑1 (MQ=60)
                               TCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATA                                                               <  SRR4302532.5080249/94‑1 (MQ=60)
                                CGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATAC                                                              <  SRR4302532.2355760/94‑1 (MQ=60)
                                CGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATAC                                                              >  SRR4302532.5922648/1‑94 (MQ=60)
                                 GTAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACT                                                             <  SRR4302532.5513620/94‑1 (MQ=60)
                                 GCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACT                                                             <  SRR4302532.3563779/94‑1 (MQ=60)
                                 GCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACT                                                             <  SRR4302532.5982278/94‑1 (MQ=60)
                                  CAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTC                                                            >  SRR4302532.3562589/1‑94 (MQ=60)
                                    AAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGTGACATATCCAGCCATTCACACTGATACTCTT                                                          >  SRR4302532.3561452/1‑94 (MQ=60)
                                       TCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCAC                                                       <  SRR4302532.1592541/94‑1 (MQ=60)
                                        CGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACT                                                      <  SRR4302532.2868011/94‑1 (MQ=60)
                                        CGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACT                                                      >  SRR4302532.5136023/1‑94 (MQ=60)
                                         GGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTC                                                     <  SRR4302532.4169758/94‑1 (MQ=60)
                                          GCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCC                                                    <  SRR4302532.490794/94‑1 (MQ=60)
                                            GAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCAC                                                  >  SRR4302532.4783547/1‑94 (MQ=60)
                                             AAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACA                                                 >  SRR4302532.3210385/1‑94 (MQ=60)
                                              AATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACAT                                                <  SRR4302532.1975208/94‑1 (MQ=60)
                                              AATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACAT                                                <  SRR4302532.6232130/94‑1 (MQ=60)
                                               ATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATG                                               >  SRR4302532.364677/1‑94 (MQ=60)
                                                 TCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTC                                             <  SRR4302532.5546402/94‑1 (MQ=60)
                                                  CCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCG                                            <  SRR4302532.6022050/94‑1 (MQ=60)
                                                  CCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCG                                            <  SRR4302532.3665693/94‑1 (MQ=60)
                                                  CCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCG                                            <  SRR4302532.2230382/94‑1 (MQ=60)
                                                   CATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGG                                           <  SRR4302532.2264207/94‑1 (MQ=60)
                                                    ATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGT                                          >  SRR4302532.3141620/1‑94 (MQ=60)
                                                    ATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGT                                          >  SRR4302532.1655172/1‑94 (MQ=60)
                                                     TACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTG                                         >  SRR4302532.5234086/1‑94 (MQ=60)
                                                     TACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTG                                         <  SRR4302532.2349558/94‑1 (MQ=60)
                                                     TACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTG                                         <  SRR4302532.4345217/94‑1 (MQ=60)
                                                      ACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGT                                        >  SRR4302532.1637499/1‑94 (MQ=60)
                                                      ACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGA                                        >  SRR4302532.1637498/1‑94 (MQ=60)
                                                        CTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTAC                                      >  SRR4302532.331782/1‑94 (MQ=60)
                                                        CTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTAC                                      <  SRR4302532.413451/94‑1 (MQ=60)
                                                         TGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACA                                     >  SRR4302532.2871996/1‑94 (MQ=60)
                                                          GTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACAT                                    <  SRR4302532.3577822/94‑1 (MQ=60)
                                                          GCTCACCGACGACGGCGCTGACGCGATCAAATACGCGGGGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGCTGTACAT                                    >  SRR4302532.1201154/1‑94 (MQ=60)
                                                           TTCCCCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATT                                   <  SRR4302532.3027854/94‑1 (MQ=60)
                                                           TTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATT                                   <  SRR4302532.2151032/94‑1 (MQ=60)
                                                             CACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGA                                 >  SRR4302532.4753066/1‑94 (MQ=60)
                                                             CACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGA                                 <  SRR4302532.2757677/94‑1 (MQ=60)
                                                               CCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGT                               <  SRR4302532.6017451/94‑1 (MQ=60)
                                                                CGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTG                              <  SRR4302532.4500380/94‑1 (MQ=60)
                                                                 GACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGC                             >  SRR4302532.837883/1‑94 (MQ=60)
                                                                  ACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCA                            >  SRR4302532.4667927/1‑94 (MQ=60)
                                                                  ACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCA                            >  SRR4302532.6177379/1‑94 (MQ=60)
                                                                  ACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCA                            <  SRR4302532.4934195/94‑1 (MQ=60)
                                                                   CGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAG                           >  SRR4302532.3946718/1‑94 (MQ=60)
                                                                    GACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGC                          >  SRR4302532.1139139/1‑94 (MQ=60)
                                                                     ACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCC                         >  SRR4302532.4648140/1‑94 (MQ=60)
                                                                       GGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCG                       <  SRR4302532.1541752/94‑1 (MQ=60)
                                                                         CGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGC                     >  SRR4302532.1732460/1‑94 (MQ=60)
                                                                          GCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCT                    <  SRR4302532.1006382/94‑1 (MQ=60)
                                                                           CTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTA                   >  SRR4302532.1874184/1‑94 (MQ=60)
                                                                            TGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAA                  >  SRR4302532.1505739/1‑94 (MQ=60)
                                                                             GACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAAC                 <  SRR4302532.65085/94‑1 (MQ=60)
                                                                              ACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACG                <  SRR4302532.3920809/94‑1 (MQ=60)
                                                                                 CGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTAT             >  SRR4302532.4016058/1‑94 (MQ=60)
                                                                                 CGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTAT             >  SRR4302532.4147372/1‑94 (MQ=60)
                                                                                 CGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTAT             >  SRR4302532.4395796/1‑94 (MQ=60)
                                                                                   ATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCC           >  SRR4302532.763956/1‑94 (MQ=60)
                                                                                    TCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCA          <  SRR4302532.3238054/94‑1 (MQ=60)
                                                                                    TCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCA          >  SRR4302532.4449312/1‑94 (MQ=60)
                                                                                     CAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCAC         <  SRR4302532.2445005/94‑1 (MQ=60)
                                                                                       AAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCACGC       <  SRR4302532.487701/94‑1 (MQ=60)
                                                                                       AAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCACGC       >  SRR4302532.3820181/1‑94 (MQ=60)
                                                                                        AGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCACGCC      >  SRR4302532.1830300/1‑94 (MQ=60)
                                                                                           CACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTTCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCACGCCGTA   >  SRR4302532.4370650/1‑94 (MQ=60)
                                                                                            ACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCACGCCGTAT  >  SRR4302532.1397780/1‑94 (MQ=60)
                                                                                            |                                                                                             
TTACCGCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACGCGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCACGCCGTAT  >  NC_000913/1692399‑1692584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑