Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 593 264.2 13311096 97.8% 13018251 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,692,491 G→A R535R (CGC→CGT)  uidA ← beta‑D‑glucuronidase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,692,4910GA100.0% 721.5 / NA 186R535R (CGC→CGT) uidAbeta‑D‑glucuronidase
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (91/95);  total (91/95)

Only 100 of 194 total aligned reads displayed.

ACCGCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACGCGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCACGCC  >  NC_000913/1692401‑1692580
                                                                                          |                                                                                         
aCCGCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGAcacg                                                                                         >  2:3345704/1‑93 (MQ=255)
aCCGCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGAcacg                                                                                         <  2:2992042/93‑1 (MQ=255)
aCCGCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGAcacg                                                                                         <  1:4558500/93‑1 (MQ=255)
 ccGCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACgg                                                                                        <  1:556117/93‑1 (MQ=255)
 ccGCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACgg                                                                                        <  2:39099/93‑1 (MQ=255)
 ccGCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACgg                                                                                        <  1:3914488/93‑1 (MQ=255)
   gCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTg                                                                                      <  1:4612044/93‑1 (MQ=255)
   cccAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTg                                                                                      <  1:1264451/92‑1 (MQ=255)
    ccAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGa                                                                                     <  2:920281/93‑1 (MQ=255)
    ccAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGa                                                                                     >  1:1457585/1‑93 (MQ=255)
     cAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGAt                                                                                    >  2:2894782/1‑93 (MQ=255)
      aaCGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATa                                                                                   <  2:6328254/93‑1 (MQ=255)
      aaCGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATa                                                                                   >  2:5177410/1‑93 (MQ=255)
       aCGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATAc                                                                                  >  2:818339/1‑93 (MQ=255)
        cgcgCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACa                                                                                 <  1:4800400/93‑1 (MQ=255)
        cgcgCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACa                                                                                 <  2:2828679/93‑1 (MQ=255)
        cgcgCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACa                                                                                 <  1:5715245/93‑1 (MQ=255)
        cgcgCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACa                                                                                 >  2:4470803/1‑93 (MQ=255)
          cgcAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACata                                                                               <  1:3570476/93‑1 (MQ=255)
            cAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATc                                                                             >  2:3271438/1‑93 (MQ=255)
             aaTATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATcc                                                                            >  1:3740541/1‑93 (MQ=255)
             aaTATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATcc                                                                            <  1:1367064/93‑1 (MQ=255)
              atatGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCa                                                                           >  2:1520857/1‑93 (MQ=255)
              atatGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCa                                                                           <  2:6168139/93‑1 (MQ=255)
              atatGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCa                                                                           <  2:2406787/93‑1 (MQ=255)
               tatGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAg                                                                          <  2:3268640/93‑1 (MQ=255)
               tatGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAg                                                                          <  1:4484111/93‑1 (MQ=255)
                atGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGc                                                                         >  1:913866/1‑93 (MQ=255)
                atGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGc                                                                         <  1:244416/93‑1 (MQ=255)
                    cTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATg                                                                     >  1:2113411/1‑93 (MQ=255)
                     ttGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGc                                                                    <  1:1183239/93‑1 (MQ=255)
                      tGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGca                                                                   <  2:3028617/93‑1 (MQ=255)
                         gAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCacac                                                                >  2:3751112/1‑93 (MQ=255)
                          aGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACt                                                               >  1:47742/1‑93 (MQ=255)
                           ggTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTg                                                              >  2:6085221/1‑93 (MQ=255)
                            gTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGa                                                             <  1:153696/93‑1 (MQ=255)
                            gTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATACCCAGCCATGCACACTGa                                                             <  2:2133937/93‑1 (MQ=255)
                              cGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATa                                                           <  2:5837977/93‑1 (MQ=255)
                               gCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATAc                                                          >  1:1679078/1‑93 (MQ=255)
                               gCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATAc                                                          >  1:188494/1‑93 (MQ=255)
                               gCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATAc                                                          >  1:2154607/1‑93 (MQ=255)
                                 aaaaTCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATActc                                                        <  1:6371498/93‑1 (MQ=255)
                                   aaTCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCtt                                                      >  2:135504/1‑93 (MQ=255)
                                      cGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCAc                                                   >  1:2089865/1‑93 (MQ=255)
                                       ggCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGCTCAAAGACACGGTGATACATATCCAGCCATGCAGACTGATACTCTTCACt                                                  >  1:757807/1‑93 (MQ=255)
                                        gCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTc                                                 <  2:4092526/93‑1 (MQ=255)
                                        gCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTc                                                 >  1:4020513/1‑93 (MQ=255)
                                          gAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCca                                               <  1:5301975/93‑1 (MQ=255)
                                            aaTTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCcaca                                             <  2:4096313/93‑1 (MQ=255)
                                            aaTTCCATACCTGTACACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCcaca                                             <  1:3734821/93‑1 (MQ=255)
                                             aTTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACAt                                            <  1:6230772/93‑1 (MQ=255)
                                               tCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATgc                                          >  2:2564275/1‑92 (MQ=255)
                                                ccATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATGCATCTACCGCCATGCACACTGATACTCTTCACTCCNCATGTc                                         >  2:720564/1‑93 (MQ=255)
                                                 cATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCg                                        >  2:5053104/1‑93 (MQ=255)
                                                 cATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCg                                        >  2:6374841/1‑93 (MQ=255)
                                                 cATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATACCCAGCCATGCACACTGATACTCTTCACTCCACATGTCg                                        <  2:5408677/93‑1 (MQ=255)
                                                  aTACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCgg                                       >  1:2199610/1‑93 (MQ=255)
                                                  aTACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACCGTTACTCTTCACTCCACATGCCgg                                       >  2:6647968/1‑93 (MQ=255)
                                                   tACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGgt                                      >  1:4960064/1‑93 (MQ=255)
                                                   tACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGgt                                      >  2:3162506/1‑93 (MQ=255)
                                                   tACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGgt                                      >  2:2654875/1‑93 (MQ=255)
                                                   tACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGgt                                      >  2:3581779/1‑93 (MQ=255)
                                                    aCCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGgtg                                     <  1:2700096/93‑1 (MQ=255)
                                                     ccTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGgtgt                                    >  2:3441601/1‑93 (MQ=255)
                                                      cTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTa                                   >  1:4182883/1‑93 (MQ=255)
                                                      cTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTa                                   >  1:2979945/1‑93 (MQ=255)
                                                       tGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTAc                                  >  2:1170364/1‑93 (MQ=255)
                                                       tGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTAc                                  <  1:3586819/93‑1 (MQ=255)
                                                        gTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACa                                 <  2:2706775/93‑1 (MQ=255)
                                                           cACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTg                              <  2:5120730/93‑1 (MQ=255)
                                                            aCCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGa                             <  2:1207508/93‑1 (MQ=255)
                                                                acgacgGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTga                         >  2:2054606/1‑92 (MQ=255)
                                                                acgacgGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGc                         >  1:5962324/1‑93 (MQ=255)
                                                                acgacgGAGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGc                         >  1:1077246/1‑93 (MQ=255)
                                                                 cgacgGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCa                        <  1:1737966/93‑1 (MQ=255)
                                                                   acgGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGc                      <  1:3320171/93‑1 (MQ=255)
                                                                   acgGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGc                      >  1:2471500/1‑93 (MQ=255)
                                                                   acgGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGc                      >  1:441547/1‑93 (MQ=255)
                                                                   acgGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGc                      >  2:2975446/1‑93 (MQ=255)
                                                                    cgGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGcc                     <  2:4011540/93‑1 (MQ=255)
                                                                     ggCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGccc                    >  1:603352/1‑93 (MQ=255)
                                                                     ggCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGccc                    <  2:6477321/93‑1 (MQ=255)
                                                                     ggCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGccc                    <  2:4903570/93‑1 (MQ=255)
                                                                        gcTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGc                 <  1:1611454/93‑1 (MQ=255)
                                                                        gcTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGc                 >  2:5753112/1‑93 (MQ=255)
                                                                          tGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTa               >  1:284410/1‑93 (MQ=255)
                                                                           gACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTaa              <  2:4992839/93‑1 (MQ=255)
                                                                              gcgATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGt           <  1:5090056/93‑1 (MQ=255)
                                                                                gATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTAt         >  2:5320472/1‑93 (MQ=255)
                                                                                gATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTAt         <  1:1030954/93‑1 (MQ=255)
                                                                                 aTCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATc        <  2:1952080/93‑1 (MQ=255)
                                                                                  tCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATcc       <  2:2519607/93‑1 (MQ=255)
                                                                                   cAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCa      <  2:5029961/93‑1 (MQ=255)
                                                                                    aaaGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCAc     <  1:5418806/93‑1 (MQ=255)
                                                                                    aaaGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCAc     <  1:572235/93‑1 (MQ=255)
                                                                                    aaaGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCAc     <  1:4307168/93‑1 (MQ=255)
                                                                                    aaaGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCAc     >  2:4390739/1‑93 (MQ=255)
                                                                                     aaGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCACg    >  2:4667088/1‑93 (MQ=255)
                                                                                       gACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCACGcc  >  2:5549859/1‑93 (MQ=255)
                                                                                       gACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCACGcc  >  2:5489011/1‑93 (MQ=255)
                                                                                          |                                                                                         
ACCGCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACGCGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCACGCC  >  NC_000913/1692401‑1692580

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTTACCGCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACGCGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCACGCCGTAT  >  NC_000913/1692398‑1692584
                                                                                             |                                                                                             
GTTACCGCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACA                                                                                               >  SRR4302547.3043333/1‑94 (MQ=60)
GTTACCGCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACA                                                                                               <  SRR4302547.5048323/94‑1 (MQ=60)
GTTACCGCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACA                                                                                               <  SRR4302547.42607/94‑1 (MQ=60)
  TACCGCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACG                                                                                             <  SRR4302547.2165231/94‑1 (MQ=60)
   ACCGCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGG                                                                                            <  SRR4302547.4652814/94‑1 (MQ=60)
    CCGCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGT                                                                                           <  SRR4302547.566130/94‑1 (MQ=60)
    CCGCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGT                                                                                           <  SRR4302547.3994082/94‑1 (MQ=60)
      GCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGA                                                                                         <  SRR4302547.4707515/94‑1 (MQ=60)
      GCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGA                                                                                         >  SRR4302547.1486713/1‑94 (MQ=60)
      CCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGA                                                                                         <  SRR4302547.4098377/94‑1 (MQ=60)
      CCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGA                                                                                         <  SRR4302547.1289916/94‑1 (MQ=60)
       CCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGAT                                                                                        <  SRR4302547.4215482/94‑1 (MQ=60)
       CCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGAT                                                                                        >  SRR4302547.2215374/1‑94 (MQ=60)
        CAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATA                                                                                       >  SRR4302547.2136454/1‑94 (MQ=60)
          ACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACA                                                                                     <  SRR4302547.3650534/94‑1 (MQ=60)
           CGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACAT                                                                                    <  SRR4302547.6096624/94‑1 (MQ=60)
           CGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACAT                                                                                    <  SRR4302547.4899868/94‑1 (MQ=60)
           CGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACAT                                                                                    <  SRR4302547.5833285/94‑1 (MQ=60)
             CGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATAT                                                                                  <  SRR4302547.1676970/94‑1 (MQ=60)
             CGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATAT                                                                                  >  SRR4302547.5080940/1‑94 (MQ=60)
             CGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATAT                                                                                  <  SRR4302547.3643311/94‑1 (MQ=60)
               CAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCC                                                                                >  SRR4302547.3816907/1‑94 (MQ=60)
                AATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCA                                                                               <  SRR4302547.6438848/94‑1 (MQ=60)
                AATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCA                                                                               <  SRR4302547.1394501/94‑1 (MQ=60)
                  TATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGC                                                                             <  SRR4302547.4576746/94‑1 (MQ=60)
                  TATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGC                                                                             >  SRR4302547.931497/1‑94 (MQ=60)
                  TATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGC                                                                             >  SRR4302547.1853918/1‑94 (MQ=60)
                   ATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCC                                                                            <  SRR4302547.248978/94‑1 (MQ=60)
                      CCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATG                                                                         >  SRR4302547.2155515/1‑94 (MQ=60)
                       CTTGCGAGGTCGCAAAATGGGGGAAATTCCATACCTGTTCACGGACGACGGACCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGC                                                                        >  SRR4302547.5878325/1‑94 (MQ=60)
                        TTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCA                                                                       <  SRR4302547.1207139/94‑1 (MQ=60)
                            GAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACT                                                                   >  SRR4302547.48628/1‑94 (MQ=60)
                            GAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACT                                                                   >  SRR4302547.3605404/1‑94 (MQ=60)
                            GAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACT                                                                   >  SRR4302547.4424685/1‑94 (MQ=60)
                              GGTCGCAAAATGGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACAAATCCAGCCATGCACACTGA                                                                 <  SRR4302547.5347857/94‑1 (MQ=60)
                               GTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGAT                                                                <  SRR4302547.156498/94‑1 (MQ=60)
                                 CGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATAC                                                              >  SRR4302547.192047/1‑94 (MQ=60)
                                 CGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATAC                                                              >  SRR4302547.1712140/1‑94 (MQ=60)
                                 CGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATAC                                                              >  SRR4302547.2197638/1‑94 (MQ=60)
                                    AAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCT                                                           <  SRR4302547.6504440/94‑1 (MQ=60)
                                     AAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTT                                                          <  SRR4302547.1188390/94‑1 (MQ=60)
                                        TCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCAC                                                       >  SRR4302547.2131526/1‑94 (MQ=60)
                                         CGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGCTCAAAGACACGGTGATACATATCCAGCCATGCAGACTGATACTCTTCACT                                                      >  SRR4302547.772091/1‑94 (MQ=60)
                                          GGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTC                                                     >  SRR4302547.4102202/1‑94 (MQ=60)
                                          GGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTC                                                     >  SRR4302547.6211460/1‑94 (MQ=60)
                                          GGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTATACACTC                                                     >  SRR4302547.1387703/1‑94 (MQ=60)
                                             GAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCAC                                                  <  SRR4302547.5411348/94‑1 (MQ=60)
                                               AATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACAT                                                <  SRR4302547.3103880/94‑1 (MQ=60)
                                               AATTCCATACCTGTACACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACAT                                                <  SRR4302547.3811080/94‑1 (MQ=60)
                                                ATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATG                                               <  SRR4302547.6360190/94‑1 (MQ=60)
                                                 TTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGT                                              <  SRR4302547.159805/94‑1 (MQ=60)
                                                   CCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCG                                            >  SRR4302547.908554/1‑94 (MQ=60)
                                                   CCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCG                                            >  SRR4302547.2965027/1‑94 (MQ=60)
                                                    CATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGG                                           >  SRR4302547.2243797/1‑94 (MQ=60)
                                                     ATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGT                                          >  SRR4302547.5062705/1‑94 (MQ=60)
                                                       ACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGT                                        <  SRR4302547.2754290/94‑1 (MQ=60)
                                                        CCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTA                                       >  SRR4302547.3039243/1‑94 (MQ=60)
                                                        CCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTA                                       >  SRR4302547.4268130/1‑94 (MQ=60)
                                                          TGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACA                                     <  SRR4302547.3659995/94‑1 (MQ=60)
                                                          TGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACA                                     <  SRR4302547.1473742/94‑1 (MQ=60)
                                                          TGTTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACA                                     <  SRR4302547.5503423/94‑1 (MQ=60)
                                                            TTCCCCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATT                                   <  SRR4302547.2497103/94‑1 (MQ=60)
                                                            TTCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATT                                   <  SRR4302547.5880081/94‑1 (MQ=60)
                                                             TCACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTG                                  <  SRR4302547.5577972/94‑1 (MQ=60)
                                                               ACCGACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAG                                >  SRR4302547.750764/1‑94 (MQ=60)
                                                                  GACGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGC                             >  SRR4302547.6085969/1‑94 (MQ=60)
                                                                  GACGACGGAGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGC                             >  SRR4302547.1098740/1‑94 (MQ=60)
                                                                    CGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAG                           >  SRR4302547.1751352/1‑94 (MQ=60)
                                                                    CGACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAG                           <  SRR4302547.1772128/94‑1 (MQ=60)
                                                                     GACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGC                          >  SRR4302547.2521456/1‑94 (MQ=60)
                                                                     GACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGC                          >  SRR4302547.449777/1‑94 (MQ=60)
                                                                     GACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGC                          >  SRR4302547.5782259/1‑94 (MQ=60)
                                                                     GACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCAACATGTCGGTGTACATTGAGTGCAGC                          >  SRR4302547.2156767/1‑94 (MQ=60)
                                                                     GACGGCGCTGACGCGATCAAAGACACAGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGC                          >  SRR4302547.4830208/1‑94 (MQ=60)
                                                                      ACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCC                         >  SRR4302547.1564442/1‑94 (MQ=60)
                                                                      ACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCC                         <  SRR4302547.3387235/94‑1 (MQ=60)
                                                                      ACGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCC                         <  SRR4302547.3740811/94‑1 (MQ=60)
                                                                       CGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCC                        <  SRR4302547.5046302/94‑1 (MQ=60)
                                                                       CGGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCC                        >  SRR4302547.614544/1‑94 (MQ=60)
                                                                        GGCGCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGGTACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCG                       >  SRR4302547.3991101/1‑94 (MQ=60)
                                                                           GGTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCT                    >  SRR4302547.2890045/1‑94 (MQ=60)
                                                                           GCTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCT                    <  SRR4302547.1643375/94‑1 (MQ=60)
                                                                            CTGACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTA                   >  SRR4302547.289702/1‑94 (MQ=60)
                                                                               ACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACG                >  SRR4302547.2467328/1‑94 (MQ=60)
                                                                               ACGCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACG                <  SRR4302547.4534619/94‑1 (MQ=60)
                                                                                 GCGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTA              <  SRR4302547.5195043/94‑1 (MQ=60)
                                                                                  CGATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTAT             <  SRR4302547.943496/94‑1 (MQ=60)
                                                                                   GATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATC            >  SRR4302547.5833731/1‑94 (MQ=60)
                                                                                   GATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATC            <  SRR4302547.1051214/94‑1 (MQ=60)
                                                                                    ATCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCC           <  SRR4302547.1973719/94‑1 (MQ=60)
                                                                                     TCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCA          >  SRR4302547.4585849/1‑94 (MQ=60)
                                                                                     TCAAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCA          <  SRR4302547.1246061/94‑1 (MQ=60)
                                                                                       AAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCACG        <  SRR4302547.582521/94‑1 (MQ=60)
                                                                                       AAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCACG        <  SRR4302547.5530895/94‑1 (MQ=60)
                                                                                       AAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCACG        <  SRR4302547.4395772/94‑1 (MQ=60)
                                                                                       AAAGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCACG        <  SRR4302547.4653511/94‑1 (MQ=60)
                                                                                         AGACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCACGCC      >  SRR4302547.4302825/1‑94 (MQ=60)
                                                                                          GACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCACGCCG     <  SRR4302547.3812518/94‑1 (MQ=60)
                                                                                           ACACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCACGCCGT    >  SRR4302547.3327127/1‑94 (MQ=60)
                                                                                            CACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCACGCCGTA   >  SRR4302547.1872606/1‑94 (MQ=60)
                                                                                             ACGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCACGCCGTAT  <  SRR4302547.5085041/94‑1 (MQ=60)
                                                                                             |                                                                                             
GTTACCGCCAACGCGCAATATGCCTTGCGAGGTCGCAAAATCGGCGAAATTCCATACCTGTTCACCGACGACGGCGCTGACGCGATCAAAGACGCGGTGATACATATCCAGCCATGCACACTGATACTCTTCACTCCACATGTCGGTGTACATTGAGTGCAGCCCGGCTAACGTATCCACGCCGTAT  >  NC_000913/1692398‑1692584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑