Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCC  >  NC_000913/1707003‑1707189
                                                                                             |                                                                                             
CGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCA                                                                                               >  SRR4302532.4718677/1‑94 (MQ=60)
 GAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAG                                                                                              >  SRR4302532.710415/1‑94 (MQ=60)
  AAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCGGT                                                                                             <  SRR4302532.6310882/94‑1 (MQ=60)
  AAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGT                                                                                             >  SRR4302532.3380355/1‑94 (MQ=60)
      GGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCC                                                                                         >  SRR4302532.3781672/1‑94 (MQ=60)
       GCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCGGTTGCCG                                                                                        >  SRR4302532.1418317/1‑94 (MQ=60)
       GCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCG                                                                                        >  SRR4302532.3982623/1‑94 (MQ=60)
        CTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCGGTTGCCGC                                                                                       <  SRR4302532.1031492/94‑1 (MQ=60)
         TATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCGGTTGCCGCG                                                                                      >  SRR4302532.1181254/1‑94 (MQ=60)
         TATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCG                                                                                      >  SRR4302532.3516744/1‑94 (MQ=60)
            TGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCGGTTGCCGCGGCT                                                                                   <  SRR4302532.4786284/94‑1 (MQ=60)
             GCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTA                                                                                  >  SRR4302532.1027033/1‑94 (MQ=60)
              CACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTAT                                                                                 <  SRR4302532.4680617/94‑1 (MQ=60)
              CACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTAT                                                                                 >  SRR4302532.1200274/1‑94 (MQ=60)
               CCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCGGTTGCCGCGGCTATT                                                                                <  SRR4302532.1754507/94‑1 (MQ=60)
                CGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTG                                                                               <  SRR4302532.334959/94‑1 (MQ=60)
                CGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTG                                                                               >  SRR4302532.799019/1‑94 (MQ=60)
                   GCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCGGTTGCCGCGGCTATTGACC                                                                            >  SRR4302532.5160532/1‑94 (MQ=60)
                   GCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCC                                                                            <  SRR4302532.2706307/94‑1 (MQ=60)
                     CAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCGGGTGCCGCGGCTATTGCCCGC                                                                          >  SRR4302532.3613814/1‑94 (MQ=60)
                     CAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGC                                                                          <  SRR4302532.1536140/94‑1 (MQ=60)
                        AGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCT                                                                       >  SRR4302532.618975/1‑94 (MQ=60)
                           ACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAG                                                                    >  SRR4302532.3987796/1‑94 (MQ=60)
                           ACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAG                                                                    >  SRR4302532.4790803/1‑94 (MQ=60)
                           ACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAG                                                                    <  SRR4302532.2443949/94‑1 (MQ=60)
                                AGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAA                                                               <  SRR4302532.5578063/94‑1 (MQ=60)
                                  CTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAA                                                             <  SRR4302532.6171191/94‑1 (MQ=60)
                                   TGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAA                                                            >  SRR4302532.2406011/1‑94 (MQ=60)
                                   TGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAA                                                            >  SRR4302532.2348467/1‑94 (MQ=60)
                                     GAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAG                                                          <  SRR4302532.2352982/94‑1 (MQ=60)
                                      AACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGC                                                         <  SRR4302532.2688478/94‑1 (MQ=60)
                                      AACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAAC                                                         >  SRR4302532.2933306/1‑94 (MQ=60)
                                      AACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGC                                                         <  SRR4302532.2780252/94‑1 (MQ=60)
                                        CAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCG                                                       <  SRR4302532.5704265/94‑1 (MQ=60)
                                          GCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCC                                                     >  SRR4302532.4838417/1‑94 (MQ=60)
                                            AACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCA                                                   >  SRR4302532.3086491/1‑94 (MQ=60)
                                            AACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCA                                                   >  SRR4302532.4949686/1‑94 (MQ=60)
                                            AACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCA                                                   >  SRR4302532.2334326/1‑94 (MQ=60)
                                            AACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGACCGCGCTCAGGCCAAAAAAGCAGCCCA                                                   >  SRR4302532.364773/1‑94 (MQ=60)
                                             ACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAG                                                  <  SRR4302532.1130531/94‑1 (MQ=60)
                                             ACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCGGGTGCCGCGGCTATTGCCCGCGCTCCGGCCCAAAAAGCCGCCCCG                                                  >  SRR4302532.2476335/1‑94 (MQ=60)
                                             ACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAG                                                  <  SRR4302532.90810/94‑1 (MQ=60)
                                             ACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAG                                                  <  SRR4302532.90811/94‑1 (MQ=60)
                                              CAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGC                                                 >  SRR4302532.4349763/1‑94 (MQ=60)
                                                  CTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAA                                             >  SRR4302532.1194987/1‑94 (MQ=60)
                                                   TAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAG                                            <  SRR4302532.6194908/94‑1 (MQ=60)
                                                   TAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAG                                            >  SRR4302532.2557415/1‑94 (MQ=60)
                                                   TAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAG                                            <  SRR4302532.5848581/94‑1 (MQ=60)
                                                   TAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAG                                            >  SRR4302532.2338180/1‑94 (MQ=60)
                                                      TGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTT                                         >  SRR4302532.3431585/1‑94 (MQ=60)
                                                      TGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTT                                         <  SRR4302532.1549729/94‑1 (MQ=60)
                                                       GCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCGGGTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTG                                        >  SRR4302532.1760439/1‑94 (MQ=60)
                                                            ACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAAC                                   >  SRR4302532.6344126/1‑94 (MQ=60)
                                                            ACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAAC                                   <  SRR4302532.5049327/94‑1 (MQ=60)
                                                             CCAGAAGAACAGGTTGATCCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACG                                  >  SRR4302532.4650124/1‑94 (MQ=60)
                                                             CCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACG                                  <  SRR4302532.5822366/94‑1 (MQ=60)
                                                               AGAAGAACAGGTTGATCCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAG                                <  SRR4302532.3900414/94‑1 (MQ=60)
                                                               AGAAGAACAGGTTGATCCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAG                                <  SRR4302532.3142849/94‑1 (MQ=60)
                                                               AGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAG                                <  SRR4302532.3240035/94‑1 (MQ=60)
                                                                 AAGAACAGGTTGATCCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGA                              >  SRR4302532.4015156/1‑94 (MQ=60)
                                                                  AGAACAGGTTGATCCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGAC                             <  SRR4302532.1222464/94‑1 (MQ=60)
                                                                  AGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGAC                             <  SRR4302532.3083987/94‑1 (MQ=60)
                                                                   GAACAGGTTGATCCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACT                            >  SRR4302532.1371859/1‑94 (MQ=60)
                                                                   GAACAGGTCGATCCGCGCAAAGCGGCGGTTGCCGCGTCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCACAGCAGAAGGTTGTAAACGAGGACT                            <  SRR4302532.4059521/94‑1 (MQ=60)
                                                                    AACAGGTTGATCCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTA                           >  SRR4302532.23142/1‑94 (MQ=60)
                                                                    AACAGGTTGATCCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTA                           >  SRR4302532.4152736/1‑94 (MQ=60)
                                                                      CAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAA                         >  SRR4302532.627969/1‑94 (MQ=60)
                                                                        GGTTGATCCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATG                       <  SRR4302532.1908239/94‑1 (MQ=60)
                                                                        GGTTGATCCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATG                       <  SRR4302532.2730674/94‑1 (MQ=60)
                                                                            GATCCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTAT                   >  SRR4302532.686343/1‑94 (MQ=60)
                                                                            GATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTAT                   <  SRR4302532.4194138/94‑1 (MQ=60)
                                                                             ATCCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATT                  >  SRR4302532.6283706/1‑94 (MQ=60)
                                                                              TCCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTC                 <  SRR4302532.2556297/94‑1 (MQ=60)
                                                                               CCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCA                >  SRR4302532.6090674/1‑94 (MQ=60)
                                                                               CCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCA                >  SRR4302532.993433/1‑94 (MQ=60)
                                                                               CCGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCA                <  SRR4302532.2644802/94‑1 (MQ=60)
                                                                               CCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCA                >  SRR4302532.2118912/1‑94 (MQ=60)
                                                                                CGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAG               <  SRR4302532.249717/94‑1 (MQ=60)
                                                                                CGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAG               >  SRR4302532.631019/1‑94 (MQ=60)
                                                                                CGCGCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAAGGGTATTCAG               <  SRR4302532.4303290/94‑1 (MQ=60)
                                                                                 GCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGA              <  SRR4302532.4756961/94‑1 (MQ=60)
                                                                                  CGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAA             <  SRR4302532.1278450/94‑1 (MQ=60)
                                                                                   GCAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAAT            >  SRR4302532.3677039/1‑94 (MQ=60)
                                                                                    CAAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATA           <  SRR4302532.2932027/94‑1 (MQ=60)
                                                                                    CAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATA           >  SRR4302532.308768/1‑94 (MQ=60)
                                                                                    CAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATA           <  SRR4302532.1101781/94‑1 (MQ=60)
                                                                                     CAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAG          <  SRR4302532.4935696/94‑1 (MQ=60)
                                                                                     AAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAG          >  SRR4302532.983139/1‑94 (MQ=60)
                                                                                     AAAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAG          <  SRR4302532.3744419/94‑1 (MQ=60)
                                                                                     AAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAG          >  SRR4302532.2472985/1‑94 (MQ=60)
                                                                                     AAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAG          >  SRR4302532.586297/1‑94 (MQ=60)
                                                                                      AAGCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGC         <  SRR4302532.3948794/94‑1 (MQ=60)
                                                                                       AGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCT        <  SRR4302532.6297947/94‑1 (MQ=60)
                                                                                        GCGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTA       >  SRR4302532.4448149/1‑94 (MQ=60)
                                                                                         CGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGACTAGCTAG      <  SRR4302532.4626871/94‑1 (MQ=60)
                                                                                         CGGCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAG      <  SRR4302532.850327/94‑1 (MQ=60)
                                                                                         CGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAG      <  SRR4302532.2316800/94‑1 (MQ=60)
                                                                                         CGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAG      >  SRR4302532.1818547/1‑94 (MQ=60)
                                                                                         CGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAG      >  SRR4302532.4981432/1‑94 (MQ=60)
                                                                                           GCGGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCT    >  SRR4302532.4837737/1‑94 (MQ=60)
                                                                                            CAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTC   >  SRR4302532.2383399/1‑94 (MQ=60)
                                                                                             GGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCC  >  SRR4302532.3987807/1‑94 (MQ=60)
                                                                                             GGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCC  >  SRR4302532.3987808/1‑94 (MQ=60)
                                                                                             GGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCC  <  SRR4302532.3269505/94‑1 (MQ=60)
                                                                                             |                                                                                             
CGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGGTTGATCCGCGCAAAGCGGCAGTTGCCGCGGCTATTGCCCGCGCTCAGGCCAAAAAAGCCGCCCAGCAGAAGGTTGTAAACGAGGACTAAATGGTATTCAGAATAGCTAGCTCC  >  NC_000913/1707003‑1707189

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑