Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTGTTTTTGTTTTCCTTTTGGATTAATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCACCTATCCTTAGAGCGAGGCACCA  >  NC_000913/1753446‑1753632
                                                                                             |                                                                                             
CTGTTTTTGTTTTCCTTTTGGATTAATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACG                                                                                               >  SRR4302532.5179738/1‑94 (MQ=60)
CTGTTTTTGTTTTCCTTTTGGATTAATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACA                                                                                               >  SRR4302532.6359748/1‑94 (MQ=60)
CTGTTTTTGTTTTCCTTTTGGATTAATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACA                                                                                               >  SRR4302532.3994231/1‑94 (MQ=60)
  GTTTTTGTTTTCCTTTTGGATTAATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGAC                                                                                             <  SRR4302532.6274265/94‑1 (MQ=60)
   TTTTTGTTTTCCTTTTGGATTAATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACT                                                                                            >  SRR4302532.4431188/1‑94 (MQ=60)
   TTTTTGTTTTCCTTTTGGATTAATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACT                                                                                            >  SRR4302532.4431187/1‑94 (MQ=60)
    TTTTGTTTTCCTTTTGGATTAATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTC                                                                                           >  SRR4302532.310713/1‑94 (MQ=60)
     TTTGTTTTCCTTTTGGATTAATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCA                                                                                          <  SRR4302532.5811695/94‑1 (MQ=60)
     TTTGTTTTCCTTTTGGATTAATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCA                                                                                          >  SRR4302532.511309/1‑94 (MQ=60)
     TTTGTTTTCCTTTTGGATTAATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCA                                                                                          >  SRR4302532.3693875/1‑94 (MQ=60)
       TGTTTTCCTTTTGGATTAATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAA                                                                                        >  SRR4302532.5728091/1‑94 (MQ=60)
           TTCCTTTTGGATTAATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACA                                                                                    >  SRR4302532.4613153/1‑94 (MQ=60)
           TTCCTTTTGGATTAATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACA                                                                                    <  SRR4302532.4106813/94‑1 (MQ=60)
             attcaagagtcAATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGG                                                                                  >  SRR4302532.2703070/12‑94 (MQ=60)
             CCTTTTGGATTAATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGG                                                                                  <  SRR4302532.5085688/94‑1 (MQ=60)
              CTTTTGGATTAATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGC                                                                                 <  SRR4302532.2306040/94‑1 (MQ=60)
              CTTTTGGATTAATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGC                                                                                 <  SRR4302532.3387968/94‑1 (MQ=60)
               TTTTGGATTAATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCA                                                                                >  SRR4302532.3115979/1‑94 (MQ=60)
                  TGGATTAATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTC                                                                             >  SRR4302532.977680/1‑94 (MQ=60)
                  TGGATTAATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTC                                                                             >  SRR4302532.4435597/1‑94 (MQ=60)
                   GGATTAATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAACAAGGCACTCC                                                                            >  SRR4302532.1156996/1‑94 (MQ=60)
                   GGATTAATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCA                                                                            >  SRR4302532.4795610/1‑94 (MQ=60)
                   GGATTAATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCA                                                                            >  SRR4302532.16070/1‑94 (MQ=60)
                   GGATTAATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCA                                                                            >  SRR4302532.2081438/1‑94 (MQ=60)
                   GGATTAATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACACGCACTCA                                                                            >  SRR4302532.2844524/1‑94 (MQ=60)
                    GATTAATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCAC                                                                           >  SRR4302532.2314882/1‑94 (MQ=60)
                       TACTTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTT                                                                        <  SRR4302532.5670135/94‑1 (MQ=60)
                        AATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTG                                                                       >  SRR4302532.2494626/1‑94 (MQ=60)
                         ATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGGACTCAACGACTCAAAAACAGGCACTCACGTTGG                                                                      >  SRR4302532.5238691/1‑94 (MQ=60)
                         ATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAAGAGGCACCAACGTTGG                                                                      >  SRR4302532.2106423/1‑94 (MQ=60)
                         ATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGG                                                                      >  SRR4302532.2106421/1‑94 (MQ=60)
                            TCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCGGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCT                                                                   <  SRR4302532.1636010/94‑1 (MQ=60)
                             CAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTG                                                                  >  SRR4302532.3757180/1‑94 (MQ=60)
                             CAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTG                                                                  <  SRR4302532.1727900/94‑1 (MQ=60)
                               GCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAG                                                                >  SRR4302532.151382/1‑94 (MQ=60)
                                CGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGA                                                               >  SRR4302532.5488124/1‑94 (MQ=60)
                                CGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGA                                                               >  SRR4302532.3217897/1‑94 (MQ=60)
                                CGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGA                                                               >  SRR4302532.2885843/1‑94 (MQ=60)
                                 GTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGAC                                                              >  SRR4302532.3861525/1‑94 (MQ=60)
                                  TATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACA                                                             >  SRR4302532.4296499/1‑94 (MQ=60)
                                  TATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACA                                                             <  SRR4302532.5141128/94‑1 (MQ=60)
                                   ATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACAC                                                            >  SRR4302532.3490481/1‑94 (MQ=60)
                                   ATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACAC                                                            >  SRR4302532.5039289/1‑94 (MQ=60)
                                   ATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACAC                                                            >  SRR4302532.2993978/1‑94 (MQ=60)
                                   ATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACAC                                                            >  SRR4302532.246773/1‑94 (MQ=60)
                                   ATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACAC                                                            >  SRR4302532.3440714/1‑94 (MQ=60)
                                    TAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACA                                                           <  SRR4302532.2875140/94‑1 (MQ=60)
                                     AATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAA                                                          <  SRR4302532.6190318/94‑1 (MQ=60)
                                     AATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAA                                                          >  SRR4302532.4677614/1‑94 (MQ=60)
                                     AATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAA                                                          >  SRR4302532.5924661/1‑94 (MQ=60)
                                      ATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAG                                                         <  SRR4302532.993311/94‑1 (MQ=60)
                                      ATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAG                                                         <  SRR4302532.2497807/94‑1 (MQ=60)
                                      ATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAG                                                         <  SRR4302532.2497808/94‑1 (MQ=60)
                                      ATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAG                                                         <  SRR4302532.2375952/94‑1 (MQ=60)
                                        GCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCA                                                       <  SRR4302532.846684/94‑1 (MQ=60)
                                         CGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCAC                                                      >  SRR4302532.2811327/1‑94 (MQ=60)
                                          GCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACA                                                     <  SRR4302532.4687953/94‑1 (MQ=60)
                                           CGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACAC                                                    >  SRR4302532.1092034/1‑94 (MQ=60)
                                            GCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACA                                                   >  SRR4302532.3046977/1‑94 (MQ=60)
                                              CAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGCCACAAGCACACATT                                                 >  SRR4302532.3621503/1‑94 (MQ=60)
                                              CAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATT                                                 >  SRR4302532.334013/1‑94 (MQ=60)
                                               AATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTC                                                >  SRR4302532.5360498/1‑94 (MQ=60)
                                               AATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTC                                                <  SRR4302532.3421152/94‑1 (MQ=60)
                                               AATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTC                                                >  SRR4302532.966680/1‑94 (MQ=60)
                                                ATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCC                                               >  SRR4302532.2989567/1‑94 (MQ=60)
                                                ATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCC                                               >  SRR4302532.4489482/1‑94 (MQ=60)
                                                ATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCC                                               <  SRR4302532.487173/94‑1 (MQ=60)
                                                 TTGAATCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCT                                              >  SRR4302532.5505096/1‑94 (MQ=60)
                                                   GACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCT                                            <  SRR4302532.2837744/94‑1 (MQ=60)
                                                   GACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCT                                            <  SRR4302532.512751/94‑1 (MQ=60)
                                                    ACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTG                                           >  SRR4302532.5944097/1‑94 (MQ=60)
                                                     CTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGC                                          >  SRR4302532.3160379/1‑94 (MQ=60)
                                                     CTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGC                                          <  SRR4302532.3526617/94‑1 (MQ=60)
                                                       CTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCAC                                        <  SRR4302532.3927910/94‑1 (MQ=60)
                                                        TTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACG                                       >  SRR4302532.4017211/1‑94 (MQ=60)
                                                        TTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACG                                       <  SRR4302532.3524975/94‑1 (MQ=60)
                                                        TTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACG                                       <  SRR4302532.5495621/94‑1 (MQ=60)
                                                          GAATGGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCT                                     <  SRR4302532.555144/94‑1 (MQ=60)
                                                           AATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTT                                    >  SRR4302532.4562083/1‑94 (MQ=60)
                                                              GGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTT                                 <  SRR4302532.5932945/94‑1 (MQ=60)
                                                              GGTTTCAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTT                                 <  SRR4302532.4220112/94‑1 (MQ=60)
                                                               GTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTC                                >  SRR4302532.1183729/1‑94 (MQ=60)
                                                                  TCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGAT                             <  SRR4302532.3946532/94‑1 (MQ=60)
                                                                   CAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATG                            >  SRR4302532.3213227/1‑94 (MQ=60)
                                                                   CAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATG                            >  SRR4302532.3213228/1‑94 (MQ=60)
                                                                   CAGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATG                            <  SRR4302532.1150607/94‑1 (MQ=60)
                                                                    AGCACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGC‑TTTTCGATGTC                          >  SRR4302532.5707158/1‑94 (MQ=60)
                                                                     GCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTC                          <  SRR4302532.320924/94‑1 (MQ=60)
                                                                      CACTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCA                         >  SRR4302532.6203076/1‑94 (MQ=60)
                                                                       CCTTTGGACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCAC                        <  SRR4302532.5062787/94‑1 (MQ=60)
                                                                       ACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCAC                        <  SRR4302532.2044935/94‑1 (MQ=60)
                                                                        CTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCACC                       >  SRR4302532.1116597/1‑94 (MQ=60)
                                                                        CTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCACC                       <  SRR4302532.5250366/94‑1 (MQ=60)
                                                                        CTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCACC                       >  SRR4302532.3795037/1‑94 (MQ=60)
                                                                            GGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCACCTATC                   <  SRR4302532.4052724/94‑1 (MQ=60)
                                                                              ACTGTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCACCTATCCT                 >  SRR4302532.2352608/1‑94 (MQ=60)
                                                                                TGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCACCTATCCTTA               <  SRR4302532.259851/94‑1 (MQ=60)
                                                                                TGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCACCTATCCTTA               <  SRR4302532.4164914/94‑1 (MQ=60)
                                                                                TGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACAAATTCCTCTGCAAGCTTTTTGGATGTCACCTATCCTTA               >  SRR4302532.1586616/1‑94 (MQ=60)
                                                                                 GTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCACCTATCCTTAG              <  SRR4302532.525816/94‑1 (MQ=60)
                                                                                 GTAGAACTCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCACCTATCCTTAG              >  SRR4302532.3488814/1‑94 (MQ=60)
                                                                                   AGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCACCTATCCTTAGAG            <  SRR4302532.5042547/94‑1 (MQ=60)
                                                                                   AGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCACCTATCCTTAGAG            <  SRR4302532.852278/94‑1 (MQ=60)
                                                                                       CTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCACCTATCCTTAGAGCGAG        <  SRR4302532.3942524/94‑1 (MQ=60)
                                                                                        TCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCACCTATCCTTAGAGCGAGG       >  SRR4302532.5201900/1‑94 (MQ=60)
                                                                                        TCAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCCCTGAACGATTTTTCGATATCACCTATCCTTAGTGTGAGG       >  SRR4302532.3922169/1‑94 (MQ=60)
                                                                                         CAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCACCTATCCTTAGAGCGATGC      >  SRR4302532.1677237/1‑94 (MQ=60)
                                                                                         CAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCACCTATCCTTAGAGCGAGGC      <  SRR4302532.3437913/94‑1 (MQ=60)
                                                                                         CAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCACCTATCCTTAGAGCGAGGC      <  SRR4302532.5144043/94‑1 (MQ=60)
                                                                                         CAACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCACCTATCCTTAGAGCGAGGC      <  SRR4302532.4917155/94‑1 (MQ=60)
                                                                                          AACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCACCTATCCTTAGAGCGAGGCA     >  SRR4302532.3518584/1‑94 (MQ=60)
                                                                                          AACAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCACCTATCCTTAGAGCGAGGCA     >  SRR4302532.2627836/1‑94 (MQ=60)
                                                                                            CAACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCACCTATCCTTAGAGCGAGGCACC   >  SRR4302532.3976206/1‑94 (MQ=60)
                                                                                             AACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCACCTATCCTTAGAGCGAGGCACCC  >  SRR4302532.2033050/1‑94 (MQ=60)
                                                                                             AACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCACCTATCCTTAGAGCGAGGCACCA  >  SRR4302532.2033049/1‑94 (MQ=60)
                                                                                             AACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCACCTATCCTTAGAGCGAGGCACCA  <  SRR4302532.5883825/94‑1 (MQ=60)
                                                                                             |                                                                                             
CTGTTTTTGTTTTCCTTTTGGATTAATTTCAGCGTATAATGCGCGCCAATTGACTCTTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCACCTATCCTTAGAGCGAGGCACCA  >  NC_000913/1753446‑1753632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑