Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGGTTTGATTGCTTTCGGGATGATCGGTCTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGTAATTTCTCATCAGGCGGCTCTGCC  >  NC_000913/1768048‑1768232
                                                                                            |                                                                                            
TGGTTTGATTGCTTTCGGGATGATCGGTCTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTC                                                                                             <  SRR4302532.764136/94‑1 (MQ=60)
TGGTTTGATTGCTTTCGGGATGATCGGTCTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTC                                                                                             >  SRR4302532.586523/1‑94 (MQ=60)
 GGTTTGATTGCTTTCGGGATGATCGGTCTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCC                                                                                            >  SRR4302532.4484705/1‑94 (MQ=60)
   TTTGATTGCTTTCGGGATGATCGGTCTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCG                                                                                          <  SRR4302532.1311781/94‑1 (MQ=60)
      GATTTCTTTCGGGATGATCGGTCTGTTTATTGGCCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCG                                                                                       <  SRR4302532.529976/94‑1 (MQ=60)
      GATTGCTTTCGGGATGATCGGTCTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGTCGCGTGGGTGGAAGAAGCCCCGCCG                                                                                       >  SRR4302532.1264401/1‑94 (MQ=60)
        TTGCTTTCGGGATGATCGGTCTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCC                                                                                     >  SRR4302532.945123/1‑94 (MQ=60)
         TGCTTTCGGGATGATCGGTCTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCG                                                                                    >  SRR4302532.4563705/1‑94 (MQ=60)
          GCTTTCGGGATGATCGGTCTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGA                                                                                   <  SRR4302532.2669903/94‑1 (MQ=60)
            TTTCGGGATGATCGGTCTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCCGACG                                                                                 <  SRR4302532.3441938/94‑1 (MQ=60)
            TTTCGGGATGATCGGTCTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACG                                                                                 <  SRR4302532.1123341/94‑1 (MQ=60)
              TCGGGATGATCGGTCTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGA                                                                               <  SRR4302532.1340629/94‑1 (MQ=60)
              TCGGGATGATCGGTCTGTTTATTGGTCCGGTTCTGTTAGCCATTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGA                                                                               <  SRR4302532.4584546/94‑1 (MQ=60)
                GGGATGATCGGTCTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACC                                                                             <  SRR4302532.2883694/94‑1 (MQ=60)
                 GGATGATCGGTCTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCA                                                                            >  SRR4302532.4369526/1‑94 (MQ=60)
                 GGATGATCGGTCTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCA                                                                            <  SRR4302532.4653254/94‑1 (MQ=60)
                   ATGATCGGTCTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAAC                                                                          >  SRR4302532.3668929/1‑94 (MQ=60)
                   ATGATCGGTCTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAAC                                                                          <  SRR4302532.158372/94‑1 (MQ=60)
                    TGATCGGTCTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACC                                                                         <  SRR4302532.5583703/94‑1 (MQ=60)
                    TGATCGGTCTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACC                                                                         <  SRR4302532.3804411/94‑1 (MQ=60)
                     GATCTGTCTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCG                                                                        <  SRR4302532.5880842/94‑1 (MQ=60)
                     GATCGGTCTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCG                                                                        <  SRR4302532.1476980/94‑1 (MQ=60)
                     GATCGGTCTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCG                                                                        <  SRR4302532.1476981/94‑1 (MQ=60)
                         GGTCTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAG                                                                    <  SRR4302532.2650662/94‑1 (MQ=60)
                         GGTCTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAG                                                                    <  SRR4302532.3674582/94‑1 (MQ=60)
                         GGTCTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCGGGAG                                                                    >  SRR4302532.5430698/1‑94 (MQ=60)
                         GGTCTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCGGAAG                                                                    >  SRR4302532.2725961/1‑94 (MQ=60)
                           TCTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAA                                                                  >  SRR4302532.5582202/1‑94 (MQ=60)
                            CTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCGGAAGAAA                                                                 >  SRR4302532.4338169/1‑94 (MQ=60)
                            CTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCGGAAGAAA                                                                 >  SRR4302532.1830236/1‑94 (MQ=60)
                             TGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTGCCGCCGCCGACGGACCAACCGGAAGAAAT                                                                >  SRR4302532.3243484/1‑94 (MQ=60)
                               TTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTGGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCGGAAGAAATTC                                                              <  SRR4302532.29555/94‑1 (MQ=60)
                               GTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCGGAAGAAATTC                                                              <  SRR4302532.3272867/94‑1 (MQ=60)
                                TTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCT                                                             <  SRR4302532.3948275/94‑1 (MQ=60)
                                TTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCT                                                             <  SRR4302532.4504981/94‑1 (MQ=60)
                                 TATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTC                                                            >  SRR4302532.3749692/1‑94 (MQ=60)
                                 TATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGGGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTC                                                            <  SRR4302532.2377546/94‑1 (MQ=60)
                                 TATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTACCGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCCACCGGAAGAAAATCTC                                                            >  SRR4302532.114924/1‑94 (MQ=60)
                                  ATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCG                                                           <  SRR4302532.5574532/94‑1 (MQ=60)
                                   TTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGA                                                          <  SRR4302532.3434811/94‑1 (MQ=60)
                                    TGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAA                                                         >  SRR4302532.246563/1‑94 (MQ=60)
                                     ggatcgggTCTGTTAGCTGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAG                                                        >  SRR4302532.5674497/9‑94 (MQ=60)
                                     GGACCGGTTATGTTAGCCGTGTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAG                                                        <  SRR4302532.6102100/94‑1 (MQ=60)
                                      GTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGA                                                       <  SRR4302532.5999913/94‑1 (MQ=60)
                                      GTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGA                                                       >  SRR4302532.648530/1‑94 (MQ=60)
                                       TCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAA                                                      <  SRR4302532.2863994/94‑1 (MQ=60)
                                       TCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAA                                                      >  SRR4302532.789915/1‑94 (MQ=60)
                                          cgtttTGTTATCCGTTGCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCCGCCGGACCAACCGGAAGAAATTCTCGAAGAACTT                                                   <  SRR4302532.1324404/89‑1 (MQ=60)
                                          GGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTT                                                   >  SRR4302532.1061168/1‑94 (MQ=60)
                                                  TAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAAT                                           <  SRR4302532.640665/94‑1 (MQ=60)
                                                     CCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGA                                        <  SRR4302532.5376782/94‑1 (MQ=60)
                                                     CCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGA                                        <  SRR4302532.4464481/94‑1 (MQ=60)
                                                     CCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGA                                        <  SRR4302532.3828235/94‑1 (MQ=60)
                                                     CCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGA                                        >  SRR4302532.2067401/1‑94 (MQ=60)
                                                      CGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAG                                       >  SRR4302532.5562657/1‑94 (MQ=60)
                                                        TTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAA                                     <  SRR4302532.5637379/94‑1 (MQ=60)
                                                         TTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAA                                    >  SRR4302532.3428481/1‑94 (MQ=60)
                                                         TTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAA                                    >  SRR4302532.3428483/1‑94 (MQ=60)
                                                           CCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACC                                  >  SRR4302532.4687958/1‑94 (MQ=60)
                                                            CTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCG                                 >  SRR4302532.5888815/1‑94 (MQ=60)
                                                             TGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGA                                >  SRR4302532.1040452/1‑94 (MQ=60)
                                                              GGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAA                               >  SRR4302532.580043/1‑94 (MQ=60)
                                                                CGTCTGTTTGCCGCGTGGGTAGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATA                             >  SRR4302532.4728856/1‑94 (MQ=60)
                                                                 GTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAA                            >  SRR4302532.3011181/1‑94 (MQ=60)
                                                                 GTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAA                            >  SRR4302532.4176144/1‑94 (MQ=60)
                                                                 GTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAA                            >  SRR4302532.4950508/1‑94 (MQ=60)
                                                                 GTCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGACAAACCGAATAA                            >  SRR4302532.3331704/1‑94 (MQ=60)
                                                                  TCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAG                           <  SRR4302532.4114542/94‑1 (MQ=60)
                                                                  TCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAG                           <  SRR4302532.4114541/94‑1 (MQ=60)
                                                                  TCTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATAGAGAAACCGAATAAG                           >  SRR4302532.3283529/1‑94 (MQ=60)
                                                                   CTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGT                          >  SRR4302532.3417318/1‑94 (MQ=60)
                                                                   CTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGT                          <  SRR4302532.2798094/94‑1 (MQ=60)
                                                                   CTGTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGA                          >  SRR4302532.3417319/1‑94 (MQ=60)
                                                                     GTTTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGTAA                        >  SRR4302532.1739606/1‑94 (MQ=60)
                                                                       TTGCCGCGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGTAATT                      <  SRR4302532.2417795/94‑1 (MQ=60)
                                                                           CGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGTAATTTCTC                  >  SRR4302532.3344841/1‑94 (MQ=60)
                                                                           CGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGTAATTTCTC                  >  SRR4302532.3344843/1‑94 (MQ=60)
                                                                            GCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGTAATTTCTCA                 <  SRR4302532.5093461/94‑1 (MQ=60)
                                                                             CGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGTAATTTCTCAT                <  SRR4302532.4947018/94‑1 (MQ=60)
                                                                             CGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGTAATTTCTCAT                <  SRR4302532.3708428/94‑1 (MQ=60)
                                                                             CGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGTAATTTCTCAT                >  SRR4302532.540116/1‑94 (MQ=60)
                                                                             CGTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGTAATTTCTCAT                >  SRR4302532.5265771/1‑94 (MQ=60)
                                                                              GTGGGTGGAAGAAGCCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGTAATTTCTCATC               <  SRR4302532.4669829/94‑1 (MQ=60)
                                                                               TGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGTAATTTCTCATCA              <  SRR4302532.1940841/94‑1 (MQ=60)
                                                                                GGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGTAATTTCTCATCAG             <  SRR4302532.77529/94‑1 (MQ=60)
                                                                                 GGTGGAAGAAGCCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGTAATTTCTCATCAGG            <  SRR4302532.5083668/94‑1 (MQ=60)
                                                                                   TGGAAGAAGCCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGTAATTTCTCATCAGGCG          <  SRR4302532.3661032/94‑1 (MQ=60)
                                                                                    GGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGTAATTTCTCATCAGGCGG         >  SRR4302532.1887848/1‑94 (MQ=60)
                                                                                     GAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGTAATTTCTCATCAGGCGGC        >  SRR4302532.3273972/1‑94 (MQ=60)
                                                                                     GAAGAAGCCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGTAATTTCTCATCAGGCGGC        <  SRR4302532.3722045/94‑1 (MQ=60)
                                                                                      AAGAAGCCCCGCCGCCGACGGATCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGTAATTTCTCATCAGGCGGCT       >  SRR4302532.6200297/1‑94 (MQ=60)
                                                                                         AAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGTAATTTCTCATCAGGCGGCTCTG    >  SRR4302532.2666987/1‑94 (MQ=60)
                                                                                         AAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGTAATTTCTCATCAGGCGGCTCTG    <  SRR4302532.4342992/94‑1 (MQ=60)
                                                                                         AAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGTAATTTCTCATCAGGCGGCTCTG    <  SRR4302532.4197387/94‑1 (MQ=60)
                                                                                         AAGCCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGTAATTTCTCATCAGGCGGCTCTG    <  SRR4302532.5393357/94‑1 (MQ=60)
                                                                                          AGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGTAATTTCTCATCAGGCGGCTCTGC   <  SRR4302532.1381581/94‑1 (MQ=60)
                                                                                           GTCCCGACGCCGACGGACCAACCGGAAGAAATTCTCGAAGACCTTGGCGAAATCGAGAAACCGAATAAGTAATTTCTCATCAGGCGGCTCTGCC  <  SRR4302532.5685376/94‑1 (MQ=60)
                                                                                            |                                                                                            
TGGTTTGATTGCTTTCGGGATGATCGGTCTGTTTATTGGTCCGGTTCTGTTAGCCGTTTCCTGGCGTCTGTTTGCCGCGTGGGTGGAAGAAGTCCCGCCGCCGACGGACCAACCGGAAGAAATTCTCGAAGAACTTGGCGAAATCGAGAAACCGAATAAGTAATTTCTCATCAGGCGGCTCTGCC  >  NC_000913/1768048‑1768232

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑