Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TATAAAAATTACCGGACGCAAAAAAGATATTATTGTCCGCGGCGGCGAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCTAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAACGATCATGCGCTTATGTCGTGCTGAAAGCGCCGCATCATTCA  >  NC_000913/1782332‑1782518
                                                                                             |                                                                                             
TATAAAAATTACCGGACGCAAAAAAGATATTATTGTCCGCGGCGGCGAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCC                                                                                               >  SRR4302532.3784446/1‑94 (MQ=60)
  TAAAAATTACCGGACGCAAAAAAGATATTATTGTCCGCGGCGGCGAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCCAA                                                                                             >  SRR4302532.4760527/1‑94 (MQ=60)
       ATTACCGGACGCAAAAAAGATATTATTGTCCGCGGCGGCGAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCCAAAATTC                                                                                        <  SRR4302532.833949/94‑1 (MQ=60)
        TTACCGGACGCAAAAAAGATATTATTGTCCGCGGCGGCGAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCCAAAATTCA                                                                                       >  SRR4302532.4716553/1‑94 (MQ=60)
           CCGGACGCAAAAAAGATATTATTGTCCGCGGCGGCGAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCCAAAATTCACGA                                                                                    >  SRR4302532.5206271/1‑94 (MQ=60)
            CGGACGCAAAAAAGATATTATTGTCCGCGGCGGCGAAAATATTAGCATCCGTGAATTGGAAGATATTTTATTGCAGCATCCCAAAATTCACGAT                                                                                   <  SRR4302532.1755928/94‑1 (MQ=60)
               ACGCAAAAAAGATATTATTGTCCGCGGCGGCGAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCCAAAATTCACGATGCC                                                                                <  SRR4302532.4161311/94‑1 (MQ=60)
                CGCAAAAAAGATATTATTGTCCGCGGCGGCGAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCTAAAATTCACGATGCCT                                                                               >  SRR4302532.3912529/1‑94 (MQ=60)
                CGCAAAAAAGATATTATTGTCCGCGGCGGCGAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCTAAAATTCACGATGCCT                                                                               >  SRR4302532.6126390/1‑94 (MQ=60)
                CGCAAAAAAGATATTATTGTCCGCGGCGGCGAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCTAAAATTCACGATGCCT                                                                               <  SRR4302532.4090703/94‑1 (MQ=60)
                 GCAAAAAAGATATTATTGTCCGCGGCGGCGAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCCAAAATTCACGATGCCTG                                                                              <  SRR4302532.4519472/94‑1 (MQ=60)
                   AAAAAAGATATTATTGTCCGCGGCGGCGAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCTAAAATTCACGATGCCTGTG                                                                            <  SRR4302532.86440/94‑1 (MQ=60)
                   AAAAAAGATATTATTGTCCGCGGCGGCGAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCCAAAATTCACGATGCCTGTG                                                                            >  SRR4302532.1348914/1‑94 (MQ=60)
                     AAAAGATATTATTGTCCGCGGCGGCGAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCCAAAATTCACGATGCCTGTGTG                                                                          >  SRR4302532.594785/1‑94 (MQ=60)
                     AAAAGATATTATTGTCCGCGGCGGCGAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCCAAAATTCACGATGCCTGTGTG                                                                          >  SRR4302532.2588002/1‑94 (MQ=60)
                     AAAAGATATTATTGTCCGAGGCGGCGAACATATTGGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCCAAAATTCACGATGCCTGTGTG                                                                          >  SRR4302532.594784/1‑94 (MQ=60)
                      AAAGATATTATTGTCCGCGGCGGCGAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCTAAAATTCACGATGCCTGTGTGG                                                                         >  SRR4302532.4063706/1‑94 (MQ=60)
                      AAAGATATTATTGTCCGCGGCGGCGAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCCAAAATTCACGATGCCTGTGTGG                                                                         >  SRR4302532.2186800/1‑94 (MQ=60)
                       AAGATATTATTGTCCGCGGCGGCGAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCCAAAATTCACGATGCCTGTGTGGT                                                                        >  SRR4302532.4832670/1‑94 (MQ=60)
                        AGATATTATTGTCCGCGGCGGCGAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCCAAAATTCACGATGCCTGTGTGGTT                                                                       <  SRR4302532.4439517/94‑1 (MQ=60)
                          ATATTATTGTCCGCGGCGGCGAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCCAAAATTCACGATGCCTGTGTGGTTGC                                                                     >  SRR4302532.6285414/1‑94 (MQ=60)
                           TATTATTGTCCGCGGCGGCGAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCCAAAATTCACGATGCCTGTGTGGTTGCA                                                                    >  SRR4302532.1509045/1‑94 (MQ=60)
                             TTATTGTCCGCGGCGGCGAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCCAAAATTCACGATGCCTGTGTGGTTGCAAT                                                                  <  SRR4302532.5812409/94‑1 (MQ=60)
                                  GTCCGCGGCGGCGAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCCAAAATTCACGATGCCTGTGTGGTTGCAATGTCCG                                                             >  SRR4302532.2877227/1‑94 (MQ=60)
                                    CCGCGGCGGCGAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCTAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGAT                                                           <  SRR4302532.3805325/94‑1 (MQ=60)
                                     CGCGGCGGCGAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCTAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATG                                                          >  SRR4302532.2498948/1‑94 (MQ=60)
                                        GGCGGCGAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCCAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAAC                                                       <  SRR4302532.2815807/94‑1 (MQ=60)
                                             CGAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCTAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTA                                                  >  SRR4302532.3396281/1‑94 (MQ=60)
                                              GAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCTAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAG                                                 <  SRR4302532.5592974/94‑1 (MQ=60)
                                              GAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCTAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAG                                                 <  SRR4302532.901549/94‑1 (MQ=60)
                                              GAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCCAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAG                                                 >  SRR4302532.5929811/1‑94 (MQ=60)
                                               AAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCTAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGG                                                <  SRR4302532.5161575/94‑1 (MQ=60)
                                                AAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCCAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGT                                               <  SRR4302532.1346570/94‑1 (MQ=60)
                                                 AATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCCAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTG                                              >  SRR4302532.2866092/1‑94 (MQ=60)
                                                   TATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCTAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAA                                            >  SRR4302532.6100673/1‑94 (MQ=60)
                                                   TATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCCAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAA                                            <  SRR4302532.5975997/94‑1 (MQ=60)
                                                        GCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCCAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAACGATC                                       <  SRR4302532.3878847/94‑1 (MQ=60)
                                                          AGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCCAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAcggctcat                                     >  SRR4302532.2430351/1‑86 (MQ=60)
                                                            CCGTGAAGTGGAAGATATTTTATTGCAGCATCCTAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAACGATCATGC                                   <  SRR4302532.2628395/94‑1 (MQ=60)
                                                            CCGTGAAGTGGAAGATATTTTATTGCAGCATCCCAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAACGATCATGC                                   <  SRR4302532.769697/94‑1 (MQ=60)
                                                                GAAGTGGAAGATATTTTATTGCAGCATCCCAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAACGATCATGCGCTT                               >  SRR4302532.195257/1‑94 (MQ=60)
                                                                 AAGTGGAAGATATTTTATTGCAGCATCCTAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAACGATCATGCGCTTA                              <  SRR4302532.6291245/94‑1 (MQ=60)
                                                                   GTGGAAGATATTTTATTGCAGCATCCTAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAACGATCATGCGCTTATG                            >  SRR4302532.2119007/1‑94 (MQ=60)
                                                                     GGAAGATATTTTATTGCAGCATCCCAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAACGATCATGCGCTTATGTC                          >  SRR4302532.1282408/1‑94 (MQ=60)
                                                                     GGAAGATATTTTATTGCAGCATCCCAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAACGATCATGCGCTTATGTC                          <  SRR4302532.1045441/94‑1 (MQ=60)
                                                                      GAAGATATTTTATTGCAGCATCCTAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAACGATCATGCGCTTATGTCG                         >  SRR4302532.3984123/1‑94 (MQ=60)
                                                                         GATATTTTATTGCAGCATCCTAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAACGATCATGCGCTTATGTCGTGC                      <  SRR4302532.1603350/94‑1 (MQ=60)
                                                                          ATATTTTATTGCAGCATCCCAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAACGATCATGCGCTTATGTCGTGCT                     >  SRR4302532.198336/1‑94 (MQ=60)
                                                                             TTTTATTGCAGCATCCTAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAACGATCATGCGCTTATGTCGTGCTGAA                  <  SRR4302532.3561135/94‑1 (MQ=60)
                                                                             TTTTATTGCAGCATCCCAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAACGATCATGCGCTTATGTCGTGCTGAA                  <  SRR4302532.3466702/94‑1 (MQ=60)
                                                                              TTTATTGCAGCATCCTAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAACGATCATGCGCTTATGTCGTGCTGAAA                 >  SRR4302532.4434642/1‑94 (MQ=60)
                                                                                tgaTGCAGCATCCTAACATGCACGATGCCTGTGGGGTTGCAATGTCCGAGGAACGTTTCGGTGAACGATCATGCGCTTATGTCGTGCTGAAACC               <  SRR4302532.5497429/91‑1 (MQ=60)
                                                                                 ttgGCAGCATCCTAAAATTCACGATGCCTGTGTGGTTGCAATTTCCGATGAACGTTTAGGTGAACGATCATGCGCTTATGTCGTGCTGAAAGCG              <  SRR4302532.493851/91‑1 (MQ=60)
                                                                                   TGCAGCATACTAAAATTCACGATGCCTGTGTGGTTTCAATGTACGATGAACTTTTAGGGCAACGATCATGAGCTTATGTCGTGCTGAAAGCGCC            >  SRR4302532.3870985/1‑94 (MQ=60)
                                                                                    GCAGCATCCTAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAACGATCATGCGCTTATGTCGTGCTGAAAGCGCCG           <  SRR4302532.4581020/94‑1 (MQ=60)
                                                                                     CAGCATCCCAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAACGATCATGCGCTTATGTCGTGCTGAAAGCGCCGC          >  SRR4302532.3845463/1‑94 (MQ=60)
                                                                                       GCATCCCAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAACGATCATGCGCTTATGTCGTGCTGAAAGCGCCGCAT        <  SRR4302532.3093990/94‑1 (MQ=60)
                                                                                        CATCCCAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAACGATCATGCGCTTATGTCGTGCTGAAAGCGCCGCATC       >  SRR4302532.1165790/1‑94 (MQ=60)
                                                                                         ATCCTAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAACGATCATGCGCTTATGTCGTGCTGAAAGCGCCGCATCA      >  SRR4302532.6009682/1‑94 (MQ=60)
                                                                                         ATCCTAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAACGATCATGCGCTTATGTCGTGCTGAAAGCGCCGCATCA      >  SRR4302532.2870384/1‑94 (MQ=60)
                                                                                         ATCCCAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAACGATCATGCGCTTATGTCGTGCTGAAAGCGCCGCATCA      >  SRR4302532.2416825/1‑94 (MQ=60)
                                                                                         ATCCCAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAACGATCATGCGCTTATGTCGTGCTGAAAGCGCCGCATCA      <  SRR4302532.1245735/94‑1 (MQ=60)
                                                                                         ATCCCAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAACGATCATGCGCTTATGTCGTGCTGAAAGCGCCGCATCA      >  SRR4302532.3932212/1‑94 (MQ=60)
                                                                                             TAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAACGATCATGCGCTTATGTCGTGCTGAAAGCGCCGCATCATTCA  <  SRR4302532.3168339/94‑1 (MQ=60)
                                                                                             CAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAACGATCATGCGCTTATGTCGTGCTGAAAGCGCCGCATCcttct  >  SRR4302532.1628772/1‑89 (MQ=60)
                                                                                             |                                                                                             
TATAAAAATTACCGGACGCAAAAAAGATATTATTGTCCGCGGCGGCGAAAATATTAGCAGCCGTGAAGTGGAAGATATTTTATTGCAGCATCCTAAAATTCACGATGCCTGTGTGGTTGCAATGTCCGATGAACGTTTAGGTGAACGATCATGCGCTTATGTCGTGCTGAAAGCGCCGCATCATTCA  >  NC_000913/1782332‑1782518

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑