Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGTTTGATAGTGTAGACGGTTACTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAATGCCTCCCGCAATGATGCAAT  >  NC_000913/1789278‑1789464
                                                                                             |                                                                                             
TGTTTGATAGTGTAGACGGTTACTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGG                                                                                               >  SRR4302532.4232532/1‑94 (MQ=60)
TGTTTGATAGTGTAGACGGTTACTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGG                                                                                               >  SRR4302532.2599251/1‑94 (MQ=60)
TGTTTGATAGTGTAGACGGTTACTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGA                                                                                               >  SRR4302532.5318403/1‑94 (MQ=60)
 GTTTGATAGTGTAGACGGTTACTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGAC                                                                                              >  SRR4302532.2165324/1‑94 (MQ=60)
 GTTTGATAGTGTAGACGGTTACTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGCTATCTGATTTATGGGAACGAC                                                                                              >  SRR4302532.3128353/1‑94 (MQ=60)
  TTTGATAGTGTAGACGGTTACTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACA                                                                                             <  SRR4302532.3157364/94‑1 (MQ=60)
   TTGATAGTGTAGACGGTTACTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGGCAG                                                                                            <  SRR4302532.2129094/94‑1 (MQ=60)
   TTGATAGTGTAGACGGTTACTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAG                                                                                            >  SRR4302532.670693/1‑94 (MQ=60)
   TTGATAGTGTAGACGGTTACTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAG                                                                                            >  SRR4302532.5145938/1‑94 (MQ=60)
    TGATAGTGTAGACGGTTACTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGG                                                                                           >  SRR4302532.5823223/1‑94 (MQ=60)
     GATAGTGTAGACGGTTACTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGGCAGGC                                                                                          <  SRR4302532.4188489/94‑1 (MQ=60)
     GATAGTGTAGACGGTTACTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGC                                                                                          <  SRR4302532.1708167/94‑1 (MQ=60)
      ATAGTGTAGACGGTTACTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCC                                                                                         >  SRR4302532.125947/1‑94 (MQ=60)
      ATAGTGTAGACGGTTACTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCC                                                                                         >  SRR4302532.6330736/1‑94 (MQ=60)
        AGTGTAGACGGTTACTCTCGTCTTAAACAGCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCAC                                                                                       <  SRR4302532.3328931/94‑1 (MQ=60)
         GTGTAGACGGTTACTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACA                                                                                      <  SRR4302532.4736552/94‑1 (MQ=60)
          TGTAGACGGTTACTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAG                                                                                     >  SRR4302532.6105960/1‑94 (MQ=60)
            TAGACGGTTACTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGC                                                                                   >  SRR4302532.5671056/1‑94 (MQ=60)
              GACGGTTACTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCAT                                                                                 <  SRR4302532.5491656/94‑1 (MQ=60)
               ACGGTTACTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATC                                                                                >  SRR4302532.765853/1‑94 (MQ=60)
                 GGTTACTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCC                                                                              >  SRR4302532.3632794/1‑94 (MQ=60)
                   TTACTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTG                                                                            >  SRR4302532.4426802/1‑94 (MQ=60)
                   TTACTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTG                                                                            >  SRR4302532.1938971/1‑94 (MQ=60)
                   TTACTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTG                                                                            >  SRR4302532.5806087/1‑94 (MQ=60)
                    TACTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGG                                                                           <  SRR4302532.6158280/94‑1 (MQ=60)
                    TACTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGG                                                                           <  SRR4302532.4760115/94‑1 (MQ=60)
                    TACTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGG                                                                           >  SRR4302532.2291137/1‑94 (MQ=60)
                     tcaCTCGTCTCAAACCCCAGCAAACAGAAGGGTTACCGCTGAACCAGCGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGA                                                                          <  SRR4302532.1925087/91‑1 (MQ=60)
                     ACTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGA                                                                          >  SRR4302532.4342609/1‑94 (MQ=60)
                      CTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAG                                                                         <  SRR4302532.2674725/94‑1 (MQ=60)
                      CTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAG                                                                         >  SRR4302532.5800374/1‑94 (MQ=60)
                       TCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGA                                                                        >  SRR4302532.3117256/1‑94 (MQ=60)
                       TCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGA                                                                        >  SRR4302532.3241790/1‑94 (MQ=60)
                        CTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGCGAG                                                                       >  SRR4302532.3077677/1‑94 (MQ=60)
                        CTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAG                                                                       <  SRR4302532.3818756/94‑1 (MQ=60)
                        CTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAG                                                                       <  SRR4302532.5331624/94‑1 (MQ=60)
                        CTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAG                                                                       >  SRR4302532.2969384/1‑94 (MQ=60)
                         TCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGC                                                                      >  SRR4302532.570677/1‑94 (MQ=60)
                          CGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCT                                                                     >  SRR4302532.1167556/1‑94 (MQ=60)
                          CGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCA                                                                     >  SRR4302532.1439192/1‑94 (MQ=60)
                          CGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCA                                                                     >  SRR4302532.2987664/1‑94 (MQ=60)
                           GTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGcgcag                                                                    >  SRR4302532.484348/1‑89 (MQ=60)
                           GTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCAT                                                                    >  SRR4302532.2734881/1‑94 (MQ=60)
                             CTTAAACACCAGCAAACAGAAGGGTTATCGCTGCACCAACGACGATATCTGATTTATGGGAACGACAGGCCCCAGGCATCACTGGAGAGCATGG                                                                  >  SRR4302532.3146202/1‑94 (MQ=60)
                             CTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGG                                                                  <  SRR4302532.264019/94‑1 (MQ=60)
                                AAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAA                                                               <  SRR4302532.1327295/94‑1 (MQ=60)
                                AAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAA                                                               <  SRR4302532.3404332/94‑1 (MQ=60)
                                 AACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAAT                                                              <  SRR4302532.1483713/94‑1 (MQ=60)
                                  ACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATC                                                             <  SRR4302532.6262522/94‑1 (MQ=60)
                                   CACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCG                                                            >  SRR4302532.2205035/1‑94 (MQ=60)
                                    ACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGA                                                           >  SRR4302532.6284452/1‑94 (MQ=60)
                                      CAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAG                                                         <  SRR4302532.2606208/94‑1 (MQ=60)
                                         CAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGG                                                      >  SRR4302532.3755761/1‑94 (MQ=60)
                                         CAAACAGAAGGGTTATCGCTGAACCAACGTCGGTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGCAGGGG                                                      >  SRR4302532.3755763/1‑94 (MQ=60)
                                          AAACAGGAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGG                                                     >  SRR4302532.6311488/1‑94 (MQ=60)
                                          AAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGG                                                     <  SRR4302532.2535629/94‑1 (MQ=60)
                                           AACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGT                                                    <  SRR4302532.2171969/94‑1 (MQ=60)
                                            ACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTA                                                   <  SRR4302532.2918316/94‑1 (MQ=60)
                                              AGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAAT                                                 <  SRR4302532.511501/94‑1 (MQ=60)
                                              AGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAAT                                                 >  SRR4302532.1369353/1‑94 (MQ=60)
                                               GAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATC                                                >  SRR4302532.4562048/1‑94 (MQ=60)
                                                AAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCT                                               <  SRR4302532.4791227/94‑1 (MQ=60)
                                                 AGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTG                                              <  SRR4302532.349354/94‑1 (MQ=60)
                                                   GGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTG                                            <  SRR4302532.5997494/94‑1 (MQ=60)
                                                    GTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGC                                           >  SRR4302532.1913111/1‑94 (MQ=60)
                                                     TTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCC                                          >  SRR4302532.3595300/1‑94 (MQ=60)
                                                      TATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCA                                         >  SRR4302532.6086140/1‑94 (MQ=60)
                                                       ATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAA                                        >  SRR4302532.2927902/1‑94 (MQ=60)
                                                       ATCGCTGAACCAACGTAGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGCGCATGGAAATCGAAGGGGGTAATCTGATCCAA                                        >  SRR4302532.1292023/1‑94 (MQ=60)
                                                          GCTGAACCAACGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATAT                                     <  SRR4302532.3996418/94‑1 (MQ=60)
                                                           CTGAACCAACGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATT                                    <  SRR4302532.4259268/94‑1 (MQ=60)
                                                            TGAACCAACGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTT                                   >  SRR4302532.1801748/1‑94 (MQ=60)
                                                            TGAACCAACGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTT                                   >  SRR4302532.1790019/1‑94 (MQ=60)
                                                            TGAACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTT                                   <  SRR4302532.1175231/94‑1 (MQ=60)
                                                              AACCAACGTCTTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCT                                 <  SRR4302532.2652497/94‑1 (MQ=60)
                                                              AACCAACGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCT                                 <  SRR4302532.5928776/94‑1 (MQ=60)
                                                               ACCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTC                                >  SRR4302532.1874827/1‑94 (MQ=60)
                                                                CCAACGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGC                               >  SRR4302532.6199323/1‑94 (MQ=60)
                                                                CCAACGGTGTTAACTTATTTAAGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGC                               <  SRR4302532.4928819/94‑1 (MQ=60)
                                                                   ACGTCGTTATCTGATTTATGGGAACGGCAGGCGACAGGCATCCCTGGAGAGCTTGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGT                            <  SRR4302532.4923322/94‑1 (MQ=60)
                                                                    CGTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTA                           >  SRR4302532.4205786/1‑94 (MQ=60)
                                                                     GTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTAT                          <  SRR4302532.774877/94‑1 (MQ=60)
                                                                     GTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATACCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTAT                          >  SRR4302532.3319614/1‑94 (MQ=60)
                                                                     GTCGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTAT                          >  SRR4302532.5249189/1‑94 (MQ=60)
                                                                       CGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCA                        <  SRR4302532.2366715/94‑1 (MQ=60)
                                                                       CGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCA                        >  SRR4302532.3666161/1‑94 (MQ=60)
                                                                       CGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCA                        <  SRR4302532.5716668/94‑1 (MQ=60)
                                                                       CGTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCA                        <  SRR4302532.3298024/94‑1 (MQ=60)
                                                                        GTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGGGAGCATGGAAATCGAAGGGGGGAATCTGTGCCAATATTTCTGCCGTATCAA                       >  SRR4302532.3912884/1‑94 (MQ=60)
                                                                        GTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAA                       <  SRR4302532.4042713/94‑1 (MQ=60)
                                                                        GTTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGGAATCTGTGCCAATATTTCTGCGGTGTCAA                       >  SRR4302532.4417828/1‑94 (MQ=60)
                                                                         TTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAAT                      <  SRR4302532.10145/94‑1 (MQ=60)
                                                                         TTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAAT                      >  SRR4302532.2241848/1‑94 (MQ=60)
                                                                         TTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAAT                      <  SRR4302532.269713/94‑1 (MQ=60)
                                                                         TTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAAT                      <  SRR4302532.3213013/94‑1 (MQ=60)
                                                                         TTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAAT                      <  SRR4302532.4831934/94‑1 (MQ=60)
                                                                         TTATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAAT                      <  SRR4302532.4831935/94‑1 (MQ=60)
                                                                          TATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAATG                     >  SRR4302532.4145301/1‑94 (MQ=60)
                                                                          TATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAATA                     >  SRR4302532.1491474/1‑94 (MQ=60)
                                                                          TATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAATA                     >  SRR4302532.1491473/1‑94 (MQ=60)
                                                                          TATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAATG                     >  SRR4302532.4851943/1‑94 (MQ=60)
                                                                          TATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAATG                     <  SRR4302532.5511477/94‑1 (MQ=60)
                                                                          TATCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAATG                     >  SRR4302532.4153129/1‑94 (MQ=60)
                                                                           ATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAATGC                    <  SRR4302532.4078463/94‑1 (MQ=60)
                                                                           ATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAATGC                    <  SRR4302532.2240466/94‑1 (MQ=60)
                                                                            TCTGATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAATGCC                   >  SRR4302532.794017/1‑94 (MQ=60)
                                                                               GATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAATGCCTCC                >  SRR4302532.1859612/1‑94 (MQ=60)
                                                                                ATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAATGCCTCCC               <  SRR4302532.1364961/94‑1 (MQ=60)
                                                                                ATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAATGCCTCCC               >  SRR4302532.633284/1‑94 (MQ=60)
                                                                                ATTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAATGCCTCCC               <  SRR4302532.2820496/94‑1 (MQ=60)
                                                                                 TTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAATGCCTCCCG              <  SRR4302532.1081775/94‑1 (MQ=60)
                                                                                 TTTATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAATGCCTCCCG              >  SRR4302532.1917301/1‑94 (MQ=60)
                                                                                  TTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAATGCCTCCCGC             <  SRR4302532.5286719/94‑1 (MQ=60)
                                                                                  TTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAATGCCTCCCGC             >  SRR4302532.354585/1‑94 (MQ=60)
                                                                                    ATGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAATGCCTCCCGCAA           >  SRR4302532.4224810/1‑94 (MQ=60)
                                                                                     TGGGAACGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAATGCCTCCCGCAAT          >  SRR4302532.3546861/1‑94 (MQ=60)
                                                                                      GGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAATGCCTCCCGCAATG         >  SRR4302532.2513735/1‑94 (MQ=60)
                                                                                        GAACGACAGGCCACTGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAATGCCTCCCGCAATGAT       <  SRR4302532.1071262/94‑1 (MQ=60)
                                                                                          ACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAATGCCTCCCGCAATGATGC     >  SRR4302532.1218060/1‑94 (MQ=60)
                                                                                           CGACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAATGCCTCCCGCAAagcagca    >  SRR4302532.2064513/1‑87 (MQ=60)
                                                                                            GACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAATGCCTCCCGCAATGATGCAA   >  SRR4302532.1308074/1‑94 (MQ=60)
                                                                                             GCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAATGCCTCCCGCAATGATGCAAT  >  SRR4302532.527363/1‑94 (MQ=60)
                                                                                             ACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAATGCCTCCCGCAATGATGCAAT  <  SRR4302532.5895623/94‑1 (MQ=60)
                                                                                             ACAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAATGCCTCCCGCAATGATGCAAT  >  SRR4302532.1971127/1‑94 (MQ=60)
                                                                                             |                                                                                             
TGTTTGATAGTGTAGACGGTTACTCTCGTCTTAAACACCAGCAAACAGAAGGGTTATCGCTGAACCAACGTCGTTATCTGATTTATGGGAACGGCAGGCCACAGGCATCCCTGGAGAGCATGGAAATCGAAGGGGGTAATCTGTGCCAATATTTCTGCCGTATCAATGCCTCCCGCAATGATGCAAT  >  NC_000913/1789278‑1789464

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑