Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCACCAGGTGCA  >  NC_000913/1791313‑1791497
                                                                                             |                                                                                           
GACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCT                                                                                             >  SRR4302532.2082539/1‑94 (MQ=60)
  CCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGC                                                                                           >  SRR4302532.2078842/1‑94 (MQ=60)
  CCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGC                                                                                           >  SRR4302532.3079761/1‑94 (MQ=60)
  CCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGC                                                                                           >  SRR4302532.1955947/1‑94 (MQ=60)
    GGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGA                                                                                         >  SRR4302532.4455035/1‑94 (MQ=60)
     GCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAA                                                                                        <  SRR4302532.1473945/94‑1 (MQ=60)
       GTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACT                                                                                      <  SRR4302532.3426056/94‑1 (MQ=60)
        TTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTG                                                                                     <  SRR4302532.1995807/94‑1 (MQ=60)
         TGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGA                                                                                    >  SRR4302532.286713/1‑94 (MQ=60)
         TGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGA                                                                                    >  SRR4302532.3813980/1‑94 (MQ=60)
          GCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGAA                                                                                   <  SRR4302532.2391422/94‑1 (MQ=60)
          GCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAA                                                                                   >  SRR4302532.912654/1‑94 (MQ=60)
          GCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGAACCATGCTTCCAGTGGTTGCCCTGCGAACTGAA                                                                                   >  SRR4302532.2970893/1‑94 (MQ=60)
            AAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGACTG                                                                                 <  SRR4302532.4502474/94‑1 (MQ=60)
            AAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATG                                                                                 <  SRR4302532.5174154/94‑1 (MQ=60)
             AACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGAATGC                                                                                >  SRR4302532.3694375/1‑94 (MQ=60)
               CGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTCGTTGCCCCGCGAACTGAATGCTT                                                                              >  SRR4302532.3625058/1‑94 (MQ=60)
                GGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGAATGCTTC                                                                             >  SRR4302532.4681153/1‑94 (MQ=60)
                GGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGAATGCTTC                                                                             >  SRR4302532.4681152/1‑94 (MQ=60)
                 GCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCC                                                                            <  SRR4302532.3579743/94‑1 (MQ=60)
                  CGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCC                                                                           >  SRR4302532.786158/1‑94 (MQ=60)
                  CGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCC                                                                           >  SRR4302532.2981645/1‑94 (MQ=60)
                   GGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCT                                                                          >  SRR4302532.4021443/1‑94 (MQ=60)
                     CGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTA                                                                        >  SRR4302532.1173138/1‑94 (MQ=60)
                      GTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGAATGATTCCCTTAC                                                                       >  SRR4302532.4021083/1‑94 (MQ=60)
                      GTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTACGAACTGAATGCTTCCCTTAC                                                                       >  SRR4302532.5029380/1‑94 (MQ=60)
                       TCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACC                                                                      <  SRR4302532.5541065/94‑1 (MQ=60)
                        CTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCG                                                                     >  SRR4302532.2866229/1‑94 (MQ=60)
                         TGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTT‑CAGTGGTTGGCCCGCGAAattaaaggtttcccttaccct                                                                   >  SRR4302532.2300170/1‑73 (MQ=60)
                          GCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCT                                                                   <  SRR4302532.2842456/94‑1 (MQ=60)
                          GCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCT                                                                   >  SRR4302532.3705355/1‑94 (MQ=60)
                           CTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTG                                                                  >  SRR4302532.2225207/1‑94 (MQ=60)
                            TGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGG                                                                 >  SRR4302532.5393401/1‑94 (MQ=60)
                            TGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGG                                                                 <  SRR4302532.4158460/94‑1 (MQ=60)
                                GTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCAT                                                             <  SRR4302532.1821322/94‑1 (MQ=60)
                                GTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCAT                                                             >  SRR4302532.1971396/1‑94 (MQ=60)
                                GTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCAT                                                             >  SRR4302532.1865348/1‑94 (MQ=60)
                                 TGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATT                                                            <  SRR4302532.3749734/94‑1 (MQ=60)
                                  GAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTC                                                           >  SRR4302532.5501001/1‑94 (MQ=60)
                                   AAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCC                                                          <  SRR4302532.5085937/94‑1 (MQ=60)
                                     AAATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACTATGCTTCCAGTGGTTGCCCTGCGAACTGAAGGCGTCCCTTACCCCTGGTCAATCCGG                                                        >  SRR4302532.3598473/1‑94 (MQ=60)
                                       ATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCC                                                      >  SRR4302532.5600860/1‑94 (MQ=60)
                                       ATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCC                                                      >  SRR4302532.3438145/1‑94 (MQ=60)
                                        TAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCA                                                     <  SRR4302532.3770317/94‑1 (MQ=60)
                                          GGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATT                                                   >  SRR4302532.6285853/1‑94 (MQ=60)
                                           GCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTC                                                  <  SRR4302532.3199904/94‑1 (MQ=60)
                                              CGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCG                                               <  SRR4302532.580631/94‑1 (MQ=60)
                                               GATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGTCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGC                                              >  SRR4302532.2834675/1‑94 (MQ=60)
                                                ATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCC                                             >  SRR4302532.5838808/1‑94 (MQ=60)
                                                   CAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGT                                          >  SRR4302532.6222194/1‑94 (MQ=60)
                                                   CAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGT                                          <  SRR4302532.4593241/94‑1 (MQ=60)
                                                     GCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCCTTCCGGCCATTCGCGCCAGTAA                                        >  SRR4302532.84573/1‑94 (MQ=60)
                                                       GCGAGTTTTGTTGCGGACCATGCTTTCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGG                                      <  SRR4302532.2873404/94‑1 (MQ=60)
                                                       GCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGG                                      >  SRR4302532.389040/1‑94 (MQ=60)
                                                       GCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGG                                      <  SRR4302532.1292945/94‑1 (MQ=60)
                                                       GCGAGTTTTGGTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGG                                      <  SRR4302532.2038737/94‑1 (MQ=60)
                                                        CGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGT                                     >  SRR4302532.4954260/1‑94 (MQ=60)
                                                        CGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGT                                     <  SRR4302532.3125245/94‑1 (MQ=60)
                                                        CGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGT                                     <  SRR4302532.6137568/94‑1 (MQ=60)
                                                         GAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTA                                    <  SRR4302532.5983779/94‑1 (MQ=60)
                                                          atttgtggtgccgactATGCTTCCAGTGGTTGCCCAGCGAACTGAATGCTTCCCTTACCGCTGGTCATACCGGCCATTCGCGCCATTAAGGTAC                                   <  SRR4302532.41909/78‑1 (MQ=60)
                                                          AGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTAC                                   <  SRR4302532.2677837/94‑1 (MQ=60)
                                                          AGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTAC                                   <  SRR4302532.4540227/94‑1 (MQ=60)
                                                          AGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTAC                                   >  SRR4302532.4719266/1‑94 (MQ=60)
                                                           GTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACT                                  >  SRR4302532.3858213/1‑94 (MQ=60)
                                                           GTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACT                                  <  SRR4302532.3425234/94‑1 (MQ=60)
                                                             TTTGTTGCGGACCATGCTTTCAATGGTTGCCCCCCCAACTGACTGCTTCCCTTACCGCTGGTCATTCCGGCCCTTCGCGCCAGTAAGGTACTCT                                >  SRR4302532.1012392/1‑94 (MQ=60)
                                                             TTTGTTGCGGACCATGCTTCCAGTGGTTGCCTTGCGAACTGAGTGCTACCCTTACCGCTGGTCATTCCGGCCATTCGAGCCAGTAgagtgcact                                <  SRR4302532.5688774/94‑10 (MQ=60)
                                                               TGTTGCGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTA                              <  SRR4302532.3691723/94‑1 (MQ=60)
                                                               TGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTA                              >  SRR4302532.268997/1‑94 (MQ=60)
                                                                GTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTAC                             <  SRR4302532.4577858/94‑1 (MQ=60)
                                                                   GCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCG                          <  SRR4302532.1726723/94‑1 (MQ=60)
                                                                    CGGACCATGCTTCCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGC                         >  SRR4302532.3307169/1‑94 (MQ=60)
                                                                    CGGACCATGCTTCCAGTGGTTGCCCTACGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGC                         >  SRR4302532.1894511/1‑94 (MQ=60)
                                                                     GGACCATGCTTCCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCG                        <  SRR4302532.4647803/94‑1 (MQ=60)
                                                                        CCATGCTTCCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCA                     >  SRR4302532.4132551/1‑94 (MQ=60)
                                                                          ATGCTTCCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATT                   >  SRR4302532.4364978/1‑94 (MQ=60)
                                                                          ATGCTTCCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATT                   >  SRR4302532.2102840/1‑94 (MQ=60)
                                                                          ATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCCTT                   >  SRR4302532.427219/1‑94 (MQ=60)
                                                                          ATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATT                   >  SRR4302532.427218/1‑94 (MQ=60)
                                                                           TGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTC                  <  SRR4302532.4522765/94‑1 (MQ=60)
                                                                            GCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCG                 <  SRR4302532.1082658/94‑1 (MQ=60)
                                                                             CTTCCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGG                <  SRR4302532.5654030/94‑1 (MQ=60)
                                                                              TTCCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGC               <  SRR4302532.756012/94‑1 (MQ=60)
                                                                                CCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCC             <  SRR4302532.4314750/94‑1 (MQ=60)
                                                                                CCAGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGACATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCC             >  SRR4302532.4977174/1‑94 (MQ=60)
                                                                                  AGTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCA           >  SRR4302532.4277410/1‑94 (MQ=60)
                                                                                   GTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCAC          <  SRR4302532.55940/94‑1 (MQ=60)
                                                                                   GTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCAC          <  SRR4302532.4716157/94‑1 (MQ=60)
                                                                                   GTGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCACAC          >  SRR4302532.4360959/1‑94 (MQ=60)
                                                                                    TGGTTGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCACC         <  SRR4302532.6318977/94‑1 (MQ=60)
                                                                                     GGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCACCC        >  SRR4302532.4035423/1‑94 (MQ=60)
                                                                                        TGCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCACCAGGT     <  SRR4302532.699065/94‑1 (MQ=60)
                                                                                         GCCCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGACCCACCcgctg    >  SRR4302532.4778282/1‑89 (MQ=60)
                                                                                         GCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCACCAGGTG    <  SRR4302532.6280125/94‑1 (MQ=60)
                                                                                           CCTGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCACCAGGTGCG  >  SRR4302532.4577376/1‑94 (MQ=60)
                                                                                             |                                                                                           
GACCGGCGTTGCAAACGGCGGCGTCTGCTGTTGTGAAAGATAGGCGCGATGCAGCGCGAGTTTTGTTGCGGACCATGCTTCCAGTGGTTGCCCCGCGAACTGAATGCTTCCCTTACCGCTGGTCATTCCGGCCATTCGCGCCAGTAAGGTACTCTTACCCGCGCCATTCGGCCCCACCAGGTGCA  >  NC_000913/1791313‑1791497

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑