Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AACATCAGATCCTGACGAATGCCCAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCGGGCTTGGCAGCAGTAA  >  NC_000913/1794194‑1794378
                                                                                             |                                                                                           
AACATCAGATCCTGACGAATGCCCAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGT                                                                                             >  SRR4302532.2714193/1‑94 (MQ=60)
AACATCAGATCCTGACGAATGCCCAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGT                                                                                             >  SRR4302532.2772988/1‑94 (MQ=60)
  CATCAGATCCTGACGAATGCCCAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTC                                                                                           >  SRR4302532.3167615/1‑94 (MQ=60)
   ATCAGATCCTGACGAATGCCCAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCT                                                                                          >  SRR4302532.2814953/1‑94 (MQ=60)
   ATCAGATCCTGACGAATGCCCAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCT                                                                                          >  SRR4302532.5772939/1‑94 (MQ=60)
    TCAGATCCTGACGAATGCCCAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTG                                                                                         <  SRR4302532.5231624/94‑1 (MQ=60)
    TCAGATCCTGACGAATGCCCAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTG                                                                                         >  SRR4302532.4606655/1‑94 (MQ=60)
     CAGATCCTGACGAATGCCCAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGG                                                                                        >  SRR4302532.3627732/1‑94 (MQ=60)
      AGATCCTGACGAATGCCCAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGT                                                                                       >  SRR4302532.102921/1‑94 (MQ=60)
      AGATCCTGACGAATGCCCAACGGCGCCTGAGCATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGATCTGGT                                                                                       >  SRR4302532.1992189/1‑94 (MQ=60)
       GATCCTGACGAATGCCCAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTT                                                                                      <  SRR4302532.6324944/94‑1 (MQ=60)
       GATCCTGACGAATGCCCAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGATTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTT                                                                                      >  SRR4302532.1166445/1‑94 (MQ=60)
        ATCCTGACGAATGCCCAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTG                                                                                     >  SRR4302532.846364/1‑94 (MQ=60)
         TCCTGACGAATGCCCAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGT                                                                                    <  SRR4302532.1514158/94‑1 (MQ=60)
           CTGACGAATGCCCAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTAC                                                                                  <  SRR4302532.5501941/94‑1 (MQ=60)
            TGACGAATGCCCAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACA                                                                                 <  SRR4302532.3011200/94‑1 (MQ=60)
            TGACGAATGCCCAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACA                                                                                 >  SRR4302532.2262334/1‑94 (MQ=60)
             GACGAATGCCCAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACAC                                                                                <  SRR4302532.1757071/94‑1 (MQ=60)
              ACGAATGCCCAGCGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACC                                                                               <  SRR4302532.2128966/94‑1 (MQ=60)
               CGAATGCCCAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCA                                                                              <  SRR4302532.5177471/94‑1 (MQ=60)
               CGAATGCCCAAAGGTGCCCGAAGACCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGGTCTGCTGACGGCTCTGGTTGTACACCA                                                                              <  SRR4302532.5177470/94‑1 (MQ=60)
                GAATGCCCAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCAC                                                                             <  SRR4302532.4079881/94‑1 (MQ=60)
                  ATGCCCAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGG                                                                           >  SRR4302532.1949941/1‑94 (MQ=60)
                  ATGCCCAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGG                                                                           >  SRR4302532.2916111/1‑94 (MQ=60)
                    GCCCAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTT                                                                         <  SRR4302532.3254781/94‑1 (MQ=60)
                     CCCAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTG                                                                        >  SRR4302532.2565008/1‑94 (MQ=60)
                      CCAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGC                                                                       >  SRR4302532.4731268/1‑94 (MQ=60)
                      CCAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGC                                                                       >  SRR4302532.2307311/1‑94 (MQ=60)
                       CAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCC                                                                      >  SRR4302532.2385915/1‑94 (MQ=60)
                       CAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCC                                                                      <  SRR4302532.4787295/94‑1 (MQ=60)
                       CAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCC                                                                      <  SRR4302532.4787296/94‑1 (MQ=60)
                          CGGTGGCTGAGTATCTCGTACGAAACGCAGACCGCTTTCGAAAATGCGCACCCGGTTCTGCTGACGGTTCTGGTTGTCCACCACGGTTGCCAGC                                                                   <  SRR4302532.961935/94‑1 (MQ=60)
                          CGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGC                                                                   <  SRR4302532.4249491/94‑1 (MQ=60)
                           GGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCA                                                                  <  SRR4302532.1833307/94‑1 (MQ=60)
                            GTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAG                                                                 <  SRR4302532.5041701/94‑1 (MQ=60)
                            GTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAG                                                                 <  SRR4302532.3130444/94‑1 (MQ=60)
                             TGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGG                                                                <  SRR4302532.948345/94‑1 (MQ=60)
                             TGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGG                                                                >  SRR4302532.1750976/1‑94 (MQ=60)
                               CCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCC                                                              >  SRR4302532.5423466/1‑94 (MQ=60)
                                CTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCA                                                             <  SRR4302532.1614675/94‑1 (MQ=60)
                                CTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCA                                                             >  SRR4302532.5347038/1‑94 (MQ=60)
                                CTGAGTATCTGGTACGAAACGCAGAACGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGGTGCCAGCAGGCCA                                                             >  SRR4302532.2988095/1‑94 (MQ=60)
                                 TGAGTATCTGGTACGAACCGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAG                                                            <  SRR4302532.3519024/94‑1 (MQ=60)
                                   AGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTC                                                          >  SRR4302532.1534681/1‑94 (MQ=60)
                                   AGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTC                                                          <  SRR4302532.4136542/94‑1 (MQ=60)
                                    GTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCC                                                         >  SRR4302532.6220132/1‑94 (MQ=60)
                                    GTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCC                                                         <  SRR4302532.1242650/94‑1 (MQ=60)
                                      ATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCAC                                                       >  SRR4302532.1859924/1‑94 (MQ=60)
                                       TCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACA                                                      <  SRR4302532.1335458/94‑1 (MQ=60)
                                         TGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGA                                                    >  SRR4302532.605549/1‑94 (MQ=60)
                                          GGTACGAAACGCAGACCGCTTTCGAAAAGGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAG                                                   <  SRR4302532.6160035/94‑1 (MQ=60)
                                            TACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAA                                                 >  SRR4302532.2955444/1‑94 (MQ=60)
                                            TACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAA                                                 >  SRR4302532.2124511/1‑94 (MQ=60)
                                             ACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAA                                                >  SRR4302532.6351141/1‑94 (MQ=60)
                                             ACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAA                                                <  SRR4302532.1921152/94‑1 (MQ=60)
                                              CGAAACGCAGAAAGCTTTCGAAAATGCGCACAAGGTTCTGATGCCGGCTCTAGTTGCACACCACGGGTGCCAGCAcaccagttcacagaataca                                               >  SRR4302532.2174265/1‑75 (MQ=19)
                                               GAAGCGCAGACCGCTTTCGAAAATGCGCACACGGTTGTGCTGACGGTTTTGGTGGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGA                                              <  SRR4302532.5941341/94‑1 (MQ=60)
                                               GAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGA                                              >  SRR4302532.1726885/1‑94 (MQ=60)
                                                AAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGAC                                             <  SRR4302532.2453401/94‑1 (MQ=60)
                                                AAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGAC                                             <  SRR4302532.3234949/94‑1 (MQ=60)
                                                AAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGAC                                             >  SRR4302532.4021373/1‑94 (MQ=60)
                                                AAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGAC                                             <  SRR4302532.2022955/94‑1 (MQ=60)
                                                AAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGAC                                             <  SRR4302532.253416/94‑1 (MQ=60)
                                                AAACGCAGACCGCTTTCGAAAATGCGCACACGGTGCTGCTGCCGGCTCTGGTTGTCCCCCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGAC                                             <  SRR4302532.253417/94‑1 (MQ=60)
                                                 AACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACG                                            <  SRR4302532.2466898/94‑1 (MQ=60)
                                                 AACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACG                                            >  SRR4302532.5896115/1‑94 (MQ=60)
                                                 AACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACG                                            <  SRR4302532.844778/94‑1 (MQ=60)
                                                   cgcagcccactctgaaaacaGCGCACACGCTTCTGCTGACGGTGCTGGTTGAACACCACGGTTGCCAGCAGACAAGTCCACAAAGAAAGACGCA                                          <  SRR4302532.1337642/74‑1 (MQ=52)
                                                   CGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCA                                          >  SRR4302532.2572131/1‑94 (MQ=60)
                                                    GCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGTCCAGTCCACAGAGAAAGACGCAT                                         <  SRR4302532.2184505/94‑1 (MQ=60)
                                                     CAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATT                                        <  SRR4302532.1554526/94‑1 (MQ=60)
                                                     CAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATT                                        <  SRR4302532.3703509/94‑1 (MQ=60)
                                                     CAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATT                                        >  SRR4302532.6301833/1‑94 (MQ=60)
                                                      AGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTG                                       <  SRR4302532.1185434/94‑1 (MQ=60)
                                                      AGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTG                                       <  SRR4302532.5920249/94‑1 (MQ=60)
                                                      AGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTC                                       >  SRR4302532.1871370/1‑94 (MQ=60)
                                                      AGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTG                                       <  SRR4302532.5382078/94‑1 (MQ=60)
                                                       GACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGC                                      >  SRR4302532.1732675/1‑94 (MQ=60)
                                                        ACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCT                                     <  SRR4302532.5538762/94‑1 (MQ=60)
                                                        ACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCT                                     <  SRR4302532.2951646/94‑1 (MQ=60)
                                                        ACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCT                                     >  SRR4302532.2120103/1‑94 (MQ=60)
                                                           GCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGAC                                  <  SRR4302532.1066552/94‑1 (MQ=60)
                                                             TTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACAT                                <  SRR4302532.845779/94‑1 (MQ=60)
                                                              TTCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATT                               >  SRR4302532.1781084/1‑94 (MQ=60)
                                                               TCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTT                              >  SRR4302532.3141526/1‑94 (MQ=60)
                                                               TCGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTT                              <  SRR4302532.4045761/94‑1 (MQ=60)
                                                                CGAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTC                             >  SRR4302532.3681816/1‑94 (MQ=60)
                                                                 GAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCA                            <  SRR4302532.1692749/94‑1 (MQ=60)
                                                                 GAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCA                            >  SRR4302532.918554/1‑94 (MQ=60)
                                                                 GAAAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCA                            >  SRR4302532.1274448/1‑94 (MQ=60)
                                                                  AAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAA                           <  SRR4302532.783834/94‑1 (MQ=60)
                                                                   AAATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAAC                          >  SRR4302532.2675535/1‑94 (MQ=60)
                                                                    AATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACA                         >  SRR4302532.4466465/1‑94 (MQ=60)
                                                                     ATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAG                        >  SRR4302532.6354726/1‑94 (MQ=60)
                                                                     ATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAG                        >  SRR4302532.1062842/1‑94 (MQ=60)
                                                                     ATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAG                        >  SRR4302532.6354728/1‑94 (MQ=60)
                                                                     ATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAG                        <  SRR4302532.6057221/94‑1 (MQ=60)
                                                                     ATGCGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAG                        >  SRR4302532.581446/1‑94 (MQ=60)
                                                                      TGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGA                       >  SRR4302532.3062141/1‑94 (MQ=60)
                                                                        CGCACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGA                     <  SRR4302532.4159703/94‑1 (MQ=60)
                                                                          CACACGTTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATC                   <  SRR4302532.3135752/94‑1 (MQ=60)
                                                                          CACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATC                   <  SRR4302532.1692560/94‑1 (MQ=60)
                                                                          CACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATC                   >  SRR4302532.2429024/1‑94 (MQ=60)
                                                                           ACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCG                  >  SRR4302532.4660570/1‑94 (MQ=60)
                                                                           ACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCG                  <  SRR4302532.1167341/94‑1 (MQ=60)
                                                                           ACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCG                  >  SRR4302532.2767472/1‑94 (MQ=60)
                                                                           ACACGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCG                  <  SRR4302532.3017289/94‑1 (MQ=60)
                                                                             ACGGTTCTGCTGGCGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCGGG                >  SRR4302532.3810354/1‑94 (MQ=60)
                                                                              CGGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCGGGC               <  SRR4302532.5279787/94‑1 (MQ=60)
                                                                               GGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCGGGCT              <  SRR4302532.1905236/94‑1 (MQ=60)
                                                                               GGTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCGGGCT              >  SRR4302532.2945092/1‑94 (MQ=60)
                                                                                GTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCGGGCTT             >  SRR4302532.2491457/1‑94 (MQ=60)
                                                                                GTTCTGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCGGGCTT             <  SRR4302532.5401853/94‑1 (MQ=60)
                                                                                 TTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCGGGCTTG            <  SRR4302532.4698694/94‑1 (MQ=60)
                                                                                   CTGCTGACGGCTCTGGTTGTACACTACGGTTGCCAGCAGGCCAGTCCACCGAGAAAGACGCATTGCTGACCTTTCAACAGAGATCGGGCTTGGA          >  SRR4302532.600657/1‑94 (MQ=60)
                                                                                    TGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCGGGCTTGGCA         <  SRR4302532.4531665/94‑1 (MQ=60)
                                                                                    TGCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCGGGCTTGGCA         <  SRR4302532.3649034/94‑1 (MQ=60)
                                                                                     GCTGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCGGGCTTGGCAG        >  SRR4302532.1133342/1‑94 (MQ=60)
                                                                                     GCAGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCGTGCTTGGCAG        <  SRR4302532.857584/94‑1 (MQ=60)
                                                                                      CTAACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCGGGCTTGGCAGC       >  SRR4302532.6340340/1‑94 (MQ=60)
                                                                                       TGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCGGGCTTGGCAGCA      >  SRR4302532.5480602/1‑94 (MQ=60)
                                                                                       TGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCGGGCTTGGCAGCA      >  SRR4302532.3095399/1‑94 (MQ=60)
                                                                                       TGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCGGGCTTGGCAGCA      <  SRR4302532.2303929/94‑1 (MQ=60)
                                                                                       TGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCGGGCTTGGCAGCA      >  SRR4302532.4584783/1‑94 (MQ=60)
                                                                                       TGACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCGGGCTTGGCAGCA      >  SRR4302532.253785/1‑94 (MQ=60)
                                                                                        GACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCGGGCTTGGCAGCAG     >  SRR4302532.1563545/1‑94 (MQ=60)
                                                                                        GACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCGGGCTTGGCAGCAG     >  SRR4302532.1303748/1‑94 (MQ=60)
                                                                                         ACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCGGGCTTGGCAGCAGT    <  SRR4302532.5043713/94‑1 (MQ=60)
                                                                                         ACGGCTCTGGTTGTACACCAGGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCGGGCTTGGCAGCAGT    <  SRR4302532.1039711/94‑1 (MQ=60)
                                                                                         ACGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCGGGCTTGGCAGCAGT    >  SRR4302532.5305454/1‑94 (MQ=60)
                                                                                          CGGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCGGGCTTGGCAGCAGTA   >  SRR4302532.6049204/1‑94 (MQ=60)
                                                                                           GGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCGGGCTTGGCAGCAGTAA  >  SRR4302532.2345593/1‑94 (MQ=60)
                                                                                           GGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCGGGCTTGGCAGCAGTAA  >  SRR4302532.3836254/1‑94 (MQ=60)
                                                                                           GGCTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCGGGCTTGGCAGCAGTAA  >  SRR4302532.5184998/1‑94 (MQ=60)
                                                                                             |                                                                                           
AACATCAGATCCTGACGAATGCCCAACGGTGCCTGAGTATCTGGTACGAAACGCAGACCGCTTTCGAAAATGCGCACACGGTTCTGCTGACGGTTCTGGTTGTACACCACGGTTGCCAGCAGGCCAGTCCACAGAGAAAGACGCATTGCTGACATTTCAACAGAGATCGGGCTTGGCAGCAGTAA  >  NC_000913/1794194‑1794378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑