Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,801,157 |
T→C |
S14P (TCT→CCT) |
b1721m → |
ankyrin repeat protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,801,157 | 0 | T | C | 88.4%
| 493.2
/ 44.1
| 172 | S14P (TCT→CCT) | b1721m | ankyrin repeat protein |
| Reads supporting (aligned to +/- strand): ref base T (10/10); new base C (77/75); total (87/85) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 |
Only 100 of 181 total aligned reads displayed.
AATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTCATCACCCTACT > NC_000913/1801068‑1801245
|
aattaatCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGcctc > 1:2958288/1‑93 (MQ=255)
ttaatCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGcctcct < 2:5766144/93‑1 (MQ=255)
aatCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCa < 1:6170036/93‑1 (MQ=255)
tcatcatcCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGTCTCCTCATa < 1:313984/93‑1 (MQ=255)
tcatcatcCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATa < 1:6120696/93‑1 (MQ=255)
atcatcCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGa > 1:5432409/1‑93 (MQ=255)
tcatcCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGAt > 1:3103324/1‑93 (MQ=255)
tcatcCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGAt < 1:471717/93‑1 (MQ=255)
tcCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGc > 1:3797938/1‑93 (MQ=255)
cTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAATCCTCCTCATAGATTGcac > 2:4532282/1‑93 (MQ=255)
cTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGcac < 1:5830524/93‑1 (MQ=255)
tCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGcaca > 1:4050156/1‑93 (MQ=255)
cAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACAt < 2:1907694/93‑1 (MQ=255)
aaaCCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCg > 1:2044940/1‑93 (MQ=255)
aaCCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGa < 2:4380777/93‑1 (MQ=255)
aaCCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGa > 1:2618981/1‑93 (MQ=255)
aaCCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGa < 2:5776121/93‑1 (MQ=255)
ccTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATa < 1:1461691/93‑1 (MQ=255)
ccTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATa < 1:4177063/93‑1 (MQ=255)
cTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAg < 1:2675914/93‑1 (MQ=255)
tCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGc < 2:4866696/93‑1 (MQ=255)
tCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGc > 1:1002665/1‑93 (MQ=255)
tCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGc < 1:6326482/93‑1 (MQ=255)
cAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGa < 2:1101749/93‑1 (MQ=255)
aGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGAc < 2:5104039/93‑1 (MQ=255)
aGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGAc > 2:5046181/1‑93 (MQ=255)
gATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACa < 2:5697324/93‑1 (MQ=255)
tatatataAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATa < 1:2295901/93‑1 (MQ=255)
tatataAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATAcc < 1:4975526/93‑1 (MQ=255)
atataAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCa < 1:884313/93‑1 (MQ=255)
tataAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCaa > 1:584652/1‑93 (MQ=255)
ataAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAac > 1:3127587/1‑93 (MQ=255)
ataAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAac < 2:6185575/93‑1 (MQ=255)
aaGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAacac > 1:460360/1‑93 (MQ=255)
aGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACAcc > 2:2068527/1‑93 (MQ=255)
aGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACAcc > 1:6427752/1‑93 (MQ=255)
ggCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCt < 1:4830168/93‑1 (MQ=255)
ggCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCt < 2:1809563/93‑1 (MQ=255)
ggCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCt > 2:1597923/1‑93 (MQ=255)
gCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCtt < 2:2021635/93‑1 (MQ=255)
cGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTtc < 1:563180/93‑1 (MQ=255)
cGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTtc > 2:2547311/1‑93 (MQ=255)
gAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTtca < 2:4054638/93‑1 (MQ=255)
gAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTtca < 1:255772/93‑1 (MQ=255)
gAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTtca < 2:3102671/93‑1 (MQ=255)
aaCAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTtcat < 1:2093513/93‑1 (MQ=255)
aaCAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTtcat < 2:3173727/93‑1 (MQ=255)
aCAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTtcatc > 2:1141091/1‑93 (MQ=255)
aCAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTtcatc < 2:4202046/93‑1 (MQ=255)
gATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCaga > 2:5194987/1‑93 (MQ=255)
gATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCaga > 2:3337026/1‑93 (MQ=255)
gATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCaga > 1:718077/1‑93 (MQ=255)
gATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCaga > 1:1023688/1‑93 (MQ=255)
gATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCaga < 2:6532579/93‑1 (MQ=255)
aTTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCagag > 2:2236954/1‑93 (MQ=255)
ttATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGc > 2:641096/1‑93 (MQ=255)
tATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGcc < 1:6260069/93‑1 (MQ=255)
tGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTa > 2:4604467/1‑93 (MQ=255)
gAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTAt < 2:6624075/93‑1 (MQ=255)
gTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTa > 1:4732360/1‑93 (MQ=255)
tCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTaa > 2:1520420/1‑93 (MQ=255)
cAAAACGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAAt > 2:3693640/1‑93 (MQ=255)
cAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAAt < 1:3289820/93‑1 (MQ=255)
aaaaCGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATc < 1:5886753/93‑1 (MQ=255)
aaaCGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCa > 2:3678371/1‑93 (MQ=255)
aaaCGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCa < 2:5607859/93‑1 (MQ=255)
aaaCGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCa > 2:1344820/1‑93 (MQ=255)
cGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAAtt < 2:5438673/93‑1 (MQ=255)
atatCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTg < 1:5256677/93‑1 (MQ=255)
atatCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTg > 2:3445678/1‑93 (MQ=255)
tatCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTgc > 2:973353/1‑93 (MQ=255)
tatCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTgc > 1:1269402/1‑93 (MQ=255)
atCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTgcg > 1:5727666/1‑93 (MQ=255)
atCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTgcg > 2:1722233/1‑93 (MQ=255)
atCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTgcg < 2:1019055/93‑1 (MQ=255)
aTTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTgcgcgc > 1:2244796/1‑93 (MQ=255)
aTTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTgcgcgc > 1:529262/1‑93 (MQ=255)
ttATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGcc > 2:6330271/1‑93 (MQ=255)
ttATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGcc < 1:5817180/93‑1 (MQ=255)
ttATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGcc < 2:5001844/93‑1 (MQ=255)
tATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCa < 1:1144499/93‑1 (MQ=255)
aTCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAg < 2:2652997/93‑1 (MQ=255)
tCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGc < 2:4844909/93‑1 (MQ=255)
aGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCtc > 1:393866/1‑93 (MQ=255)
aGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCtc > 1:4381205/1‑93 (MQ=255)
aaCTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCtcat > 1:2791432/1‑93 (MQ=255)
aCTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCtcatc > 2:2937730/1‑93 (MQ=255)
tCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTCATCAc < 1:796174/93‑1 (MQ=255)
cATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTCATCAcc > 2:5830162/1‑93 (MQ=255)
cATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTCATCAcc < 2:2575742/93‑1 (MQ=255)
cATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCATATTAATCAATTTGCGCGCCAGCTCATCAcc > 2:3049762/1‑93 (MQ=255)
aTTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTCATCAccc < 2:5942375/93‑1 (MQ=255)
aTTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTCATCAccc > 1:4649447/1‑93 (MQ=255)
aTTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTCATCAccc < 1:5014207/93‑1 (MQ=255)
ttATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTCATCACCCt > 1:4185166/1‑93 (MQ=255)
tataAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTCATCACCCTa < 2:1072662/93‑1 (MQ=255)
tataAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTCATCACCCTa > 1:6144393/1‑93 (MQ=255)
taAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTCATCACCCTACt < 2:6038125/93‑1 (MQ=255)
taAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTCATCACCCTACt < 2:2704888/93‑1 (MQ=255)
taAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTCATCACCCTACt < 2:289994/93‑1 (MQ=255)
|
AATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTCATCACCCTACT > NC_000913/1801068‑1801245
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTCATCACCCTACTTGATA > NC_000913/1801065‑1801250
|
AATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCC > SRR4302547.366000/1‑94 (MQ=60)
ATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCT < SRR4302547.5293296/94‑1 (MQ=60)
TAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTC > SRR4302547.3017167/1‑94 (MQ=60)
AATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCC > SRR4302547.4168957/1‑94 (MQ=60)
AATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCC < SRR4302547.5409276/94‑1 (MQ=60)
TAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGTCTCCTCA > SRR4302547.4736633/1‑94 (MQ=60)
AATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCAT < SRR4302547.6298112/94‑1 (MQ=60)
TCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGTCTCCTCATAG < SRR4302547.319831/94‑1 (MQ=60)
TCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAG < SRR4302547.6247669/94‑1 (MQ=60)
CATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGA > SRR4302547.5544711/1‑94 (MQ=60)
ATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGAT > SRR4302547.3164826/1‑94 (MQ=60)
TCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATT < SRR4302547.480391/94‑1 (MQ=60)
TCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATT > SRR4302547.2777573/1‑94 (MQ=60)
ATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGC > SRR4302547.13208/1‑94 (MQ=60)
ATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGC > SRR4302547.3875363/1‑94 (MQ=60)
CTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACA < SRR4302547.5951173/94‑1 (MQ=60)
CTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACA > SRR4302547.4132418/1‑94 (MQ=60)
TCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACAT > SRR4302547.921933/1‑94 (MQ=60)
CAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATC > SRR4302547.5109354/1‑94 (MQ=60)
AAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCG > SRR4302547.2085732/1‑94 (MQ=60)
AAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGA > SRR4302547.2671753/1‑94 (MQ=60)
AACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGAT < SRR4302547.3167171/94‑1 (MQ=60)
AACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGAT > SRR4302547.3353399/1‑94 (MQ=60)
ACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATA < SRR4302547.793318/94‑1 (MQ=60)
ACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATA < SRR4302547.5593791/94‑1 (MQ=60)
ACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATA < SRR4302547.4313707/94‑1 (MQ=60)
CCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAG < SRR4302547.1490902/94‑1 (MQ=60)
CCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAG < SRR4302547.4121517/94‑1 (MQ=60)
CCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAG < SRR4302547.4262167/94‑1 (MQ=60)
CCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAG > SRR4302547.3521058/1‑94 (MQ=60)
CTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGC < SRR4302547.2729655/94‑1 (MQ=60)
CTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGC > SRR4302547.1022229/1‑94 (MQ=60)
TCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCG < SRR4302547.6458041/94‑1 (MQ=60)
CAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGAC < SRR4302547.6472692/94‑1 (MQ=60)
CAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGAC < SRR4302547.2554628/94‑1 (MQ=60)
ATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATA < SRR4302547.176347/94‑1 (MQ=60)
TATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATAC < SRR4302547.2342424/94‑1 (MQ=60)
TATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCA < SRR4302547.5078446/94‑1 (MQ=60)
ATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAA > SRR4302547.595175/1‑94 (MQ=60)
ATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAA < SRR4302547.901307/94‑1 (MQ=60)
TATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAAC > SRR4302547.3189647/1‑94 (MQ=60)
TAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACAC > SRR4302547.468868/1‑94 (MQ=60)
AAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACC > SRR4302547.6561753/1‑94 (MQ=60)
AGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCT > SRR4302547.5960929/1‑94 (MQ=60)
AGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCT > SRR4302547.5998416/1‑94 (MQ=60)
GGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTT < SRR4302547.4930300/94‑1 (MQ=60)
CGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCA < SRR4302547.573322/94‑1 (MQ=60)
GAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCAT < SRR4302547.260561/94‑1 (MQ=60)
AACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATC < SRR4302547.2135241/94‑1 (MQ=60)
AGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGA > SRR4302547.731396/1‑94 (MQ=60)
AGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGA > SRR4302547.1043779/1‑94 (MQ=60)
AGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGA > SRR4302547.5035735/1‑94 (MQ=60)
TTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCC < SRR4302547.6033183/94‑1 (MQ=60)
TTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCC < SRR4302547.5340942/94‑1 (MQ=60)
TATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCT < SRR4302547.6390128/94‑1 (MQ=60)
GAGTCAAAACGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATT < SRR4302547.4845910/94‑1 (MQ=60)
AGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTA < SRR4302547.4596015/94‑1 (MQ=60)
AGTCAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTA > SRR4302547.4830447/1‑94 (MQ=60)
CAAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATC < SRR4302547.3355868/94‑1 (MQ=60)
AAAACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCA < SRR4302547.6008632/94‑1 (MQ=60)
AACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAAT > SRR4302547.6772571/1‑94 (MQ=60)
ACGATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAAAT < SRR4302547.3031527/94‑1 (MQ=60)
GATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTG < SRR4302547.2234946/94‑1 (MQ=60)
GATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTG < SRR4302547.6453597/94‑1 (MQ=60)
ATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGC < SRR4302547.5364911/94‑1 (MQ=60)
ATATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGC > SRR4302547.1294962/1‑94 (MQ=60)
TATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCG > SRR4302547.1245639/1‑94 (MQ=60)
TATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCG > SRR4302547.5845983/1‑94 (MQ=60)
TATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCA > SRR4302547.2653366/1‑94 (MQ=60)
ATCATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGC > SRR4302547.4781281/1‑94 (MQ=60)
TATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGC > SRR4302547.538820/1‑94 (MQ=60)
CATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGC > SRR4302547.2943148/1‑94 (MQ=60)
CATTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGC > SRR4302547.2290080/1‑94 (MQ=60)
TTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCA < SRR4302547.6260368/94‑1 (MQ=60)
TTATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCA < SRR4302547.5937531/94‑1 (MQ=60)
TATCAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAG < SRR4302547.1167628/94‑1 (MQ=60)
CAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTGATCAGAGCCTATTAATCAATTTGCGCGCCAGCTC < SRR4302547.5925316/94‑1 (MQ=60)
CAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTC > SRR4302547.2311263/1‑94 (MQ=60)
CAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTC > SRR4302547.401184/1‑94 (MQ=60)
CAGAACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTC > SRR4302547.4471297/1‑94 (MQ=60)
GAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTCAT > SRR4302547.2847335/1‑94 (MQ=60)
ACTCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTCATCA > SRR4302547.6295930/1‑94 (MQ=60)
CTCATAATAAACCTCCTCATAGATTACACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTCATCAC > SRR4302547.4005041/1‑94 (MQ=60)
TCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTCATCACC < SRR4302547.1088313/94‑1 (MQ=60)
TCATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTCATCACC < SRR4302547.811244/94‑1 (MQ=60)
CATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTCATCACCC > SRR4302547.4745761/1‑94 (MQ=60)
ATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTCATCACCCT < SRR4302547.5117852/94‑1 (MQ=60)
ATTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTCATCACCCT > SRR4302547.4270474/1‑94 (MQ=60)
TTATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTCATCACCCTA > SRR4302547.6271876/1‑94 (MQ=60)
ATAAGCCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTCATCACCCTACT > SRR4302547.5805014/1‑94 (MQ=60)
CCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTCATCACCCTACTTGATA > SRR4302547.6350170/1‑94 (MQ=60)
CCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTCATCACCCTACTTGATA > SRR4302547.1229817/1‑94 (MQ=60)
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AATAATTAATCATCATCCTCAAAACCTCCAGATATATATAAGGCGAACAGATTATGAGTCAAAACGATATCATTATCAGAACTCATTATAAGTCTCCTCATAGATTGCACATCGATAGCGACATACCAACACCTTCATCAGAGCCTATTAATCAATTTGCGCGCCAGCTCATCACCCTACTTGATA > NC_000913/1801065‑1801250
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
