Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GACAGTTCGCCTGATTTTTTATGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTATCAGTCATAACACCACTGTCGCCGTTTC  >  NC_000913/1872270‑1872455
                                                                                            |                                                                                             
GACAGTTCGCCTGATTTTTTATGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGAC                                                                                              >  SRR4302532.1197835/1‑94 (MQ=60)
   AGTTCGCCTGATTTTTTATGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAG                                                                                           >  SRR4302532.3991153/1‑94 (MQ=60)
   AGTTCGCCTGATTTTTTATGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAG                                                                                           >  SRR4302532.3482158/1‑94 (MQ=60)
     TTCGCCTGATTTTTTATGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGA                                                                                         >  SRR4302532.3980507/1‑94 (MQ=60)
       CGCCTGATTTTTTATGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAA                                                                                       >  SRR4302532.6194506/1‑94 (MQ=60)
        GCCTGATTTTTTATGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAAC                                                                                      <  SRR4302532.3665182/94‑1 (MQ=60)
        GCCTGATTTTTTATGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAAC                                                                                      >  SRR4302532.989411/1‑94 (MQ=60)
        GCCTGATTTTTTATGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAAC                                                                                      >  SRR4302532.4450162/1‑94 (MQ=60)
         CCTGATTTTTTATGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACC                                                                                     <  SRR4302532.2472081/94‑1 (MQ=60)
          CTGATTTTTTATGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCA                                                                                    <  SRR4302532.4806391/94‑1 (MQ=60)
          CTGATTTTTTATGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCA                                                                                    <  SRR4302532.5080391/94‑1 (MQ=60)
          CTGATTTTTTATGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCA                                                                                    >  SRR4302532.4291902/1‑94 (MQ=60)
           TGATTTTTTATGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCAC                                                                                   >  SRR4302532.947930/1‑94 (MQ=60)
            GATTTTTTATGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACG                                                                                  >  SRR4302532.2706314/1‑94 (MQ=60)
             ATTTTTTATGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGA                                                                                 >  SRR4302532.2750230/1‑94 (MQ=60)
              TTTTTTATGCACAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCACGCGTAAAGTAAGCAGTCTTATTATTTTTTGACAAGGAAACCACGAT                                                                                <  SRR4302532.2672620/94‑1 (MQ=60)
              TTTTTTATGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGAT                                                                                <  SRR4302532.581640/94‑1 (MQ=60)
              TTTTTTATGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGAT                                                                                <  SRR4302532.2672621/94‑1 (MQ=60)
               TTTTTATGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATG                                                                               <  SRR4302532.388617/94‑1 (MQ=60)
                TTTTATGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGT                                                                              >  SRR4302532.2304729/1‑94 (MQ=60)
                TTTTATGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGT                                                                              <  SRR4302532.2084548/94‑1 (MQ=60)
                 TTTATGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTT                                                                             <  SRR4302532.6024045/94‑1 (MQ=60)
                  TTATGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTT                                                                            <  SRR4302532.1320591/94‑1 (MQ=60)
                    ATGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGA                                                                          >  SRR4302532.5139603/1‑94 (MQ=60)
                    ATGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGA                                                                          >  SRR4302532.1422027/1‑94 (MQ=60)
                    ATGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGA                                                                          >  SRR4302532.1694652/1‑94 (MQ=60)
                     TGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGAT                                                                         <  SRR4302532.2301607/94‑1 (MQ=60)
                     TGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGAT                                                                         <  SRR4302532.2137908/94‑1 (MQ=60)
                     TGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGAT                                                                         >  SRR4302532.562613/1‑94 (MQ=60)
                      GCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAAACACGATGTTTGATG                                                                        >  SRR4302532.5492787/1‑94 (MQ=60)
                      GCAAAAAACGAAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATG                                                                        >  SRR4302532.1850915/1‑94 (MQ=60)
                       CAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGGAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGT                                                                       >  SRR4302532.6293033/1‑94 (MQ=60)
                       CAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGT                                                                       <  SRR4302532.155239/94‑1 (MQ=60)
                       CAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGT                                                                       <  SRR4302532.3944645/94‑1 (MQ=60)
                        AACAAACGTAACGATTTTCTACTTCCTTCCTGCCGCCAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTC                                                                      <  SRR4302532.5677479/94‑1 (MQ=60)
                        AAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTC                                                                      >  SRR4302532.2223642/1‑94 (MQ=60)
                        AAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTC                                                                      >  SRR4302532.5526112/1‑94 (MQ=60)
                         AAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCA                                                                     <  SRR4302532.4332411/94‑1 (MQ=60)
                          AAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCAC                                                                    >  SRR4302532.77711/1‑94 (MQ=60)
                            AACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTT                                                                  >  SRR4302532.1130084/1‑94 (MQ=60)
                            AACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTT                                                                  >  SRR4302532.4962929/1‑94 (MQ=60)
                             ACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTT                                                                 <  SRR4302532.50/94‑1 (MQ=60)
                             ACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTT                                                                 <  SRR4302532.190/94‑1 (MQ=60)
                             ACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTT                                                                 <  SRR4302532.184021/94‑1 (MQ=60)
                               GTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGC                                                               >  SRR4302532.2985737/1‑94 (MQ=60)
                                TAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCT                                                              >  SRR4302532.188701/1‑94 (MQ=60)
                                 AAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTG                                                             >  SRR4302532.1798863/1‑94 (MQ=60)
                                 AAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTG                                                             <  SRR4302532.2371515/94‑1 (MQ=60)
                                 AAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTG                                                             <  SRR4302532.1567638/94‑1 (MQ=60)
                                  AAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGA                                                            >  SRR4302532.262976/1‑94 (MQ=60)
                                    GATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATC                                                          <  SRR4302532.5716693/94‑1 (MQ=60)
                                     ATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCC                                                         <  SRR4302532.2176328/94‑1 (MQ=60)
                                      TTTTCTTCTTCCTTCCTGCAGCAAGCGTGAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCT                                                        <  SRR4302532.5664838/94‑1 (MQ=60)
                                      TTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCT                                                        <  SRR4302532.637546/94‑1 (MQ=60)
                                       TTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTATGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGATGATCCTG                                                       <  SRR4302532.5653360/94‑1 (MQ=60)
                                       TTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTG                                                       <  SRR4302532.4018876/94‑1 (MQ=60)
                                       TTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTG                                                       >  SRR4302532.6017657/1‑94 (MQ=60)
                                       TTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATCATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTG                                                       >  SRR4302532.5871549/1‑94 (MQ=60)
                                        TTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGC                                                      <  SRR4302532.3650618/94‑1 (MQ=60)
                                        TTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGC                                                      <  SRR4302532.872048/94‑1 (MQ=60)
                                         TCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCT                                                     >  SRR4302532.5290154/1‑94 (MQ=60)
                                         TCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCT                                                     >  SRR4302532.1792663/1‑94 (MQ=60)
                                           TACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCG                                                   >  SRR4302532.4525537/1‑94 (MQ=60)
                                            ACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGG                                                  >  SRR4302532.835325/1‑94 (MQ=60)
                                            ACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGG                                                  >  SRR4302532.4791805/1‑94 (MQ=60)
                                                CCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTA                                              >  SRR4302532.1657603/1‑94 (MQ=60)
                                                 CTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAG                                             <  SRR4302532.3562568/94‑1 (MQ=60)
                                                 CTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAG                                             >  SRR4302532.1725622/1‑94 (MQ=60)
                                                   TCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCT                                           <  SRR4302532.2575675/94‑1 (MQ=60)
                                                   TCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCT                                           <  SRR4302532.1863150/94‑1 (MQ=60)
                                                    CCTGCAGCAAGCGTGAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTG                                          <  SRR4302532.1094604/94‑1 (MQ=60)
                                                    CCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTG                                          >  SRR4302532.5978407/1‑94 (MQ=60)
                                                     CTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGC                                         >  SRR4302532.1491976/1‑94 (MQ=60)
                                                       GCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGC                                       >  SRR4302532.4811993/1‑94 (MQ=60)
                                                        CAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCT                                      <  SRR4302532.202266/94‑1 (MQ=60)
                                                         AGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTG                                     >  SRR4302532.2993548/1‑94 (MQ=60)
                                                         AGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTG                                     >  SRR4302532.2169640/1‑94 (MQ=60)
                                                          GCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGG                                    <  SRR4302532.6315546/94‑1 (MQ=60)
                                                          GCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGG                                    <  SRR4302532.1325244/94‑1 (MQ=60)
                                                          GCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGG                                    <  SRR4302532.6125143/94‑1 (MQ=60)
                                                           CAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGG                                   <  SRR4302532.3989349/94‑1 (MQ=60)
                                                               CGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTT                               >  SRR4302532.2208795/1‑94 (MQ=60)
                                                               CGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTT                               >  SRR4302532.760585/1‑94 (MQ=60)
                                                               CGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTT                               >  SRR4302532.2222900/1‑94 (MQ=60)
                                                               CGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTT                               <  SRR4302532.250452/94‑1 (MQ=60)
                                                               CGTAAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTT                               >  SRR4302532.2704272/1‑94 (MQ=60)
                                                                 TAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTAT                             >  SRR4302532.4424996/1‑94 (MQ=60)
                                                                  AAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTATC                            <  SRR4302532.2773455/94‑1 (MQ=60)
                                                                  AAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTATC                            <  SRR4302532.5563199/94‑1 (MQ=60)
                                                                  AAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTATC                            <  SRR4302532.526163/94‑1 (MQ=60)
                                                                  AAAGTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTATC                            <  SRR4302532.5491741/94‑1 (MQ=60)
                                                                   AAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTATCA                           <  SRR4302532.1218629/94‑1 (MQ=60)
                                                                    AGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTATCAG                          <  SRR4302532.1859329/94‑1 (MQ=60)
                                                                     GTAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTATCAGT                         <  SRR4302532.2553196/94‑1 (MQ=60)
                                                                      TAAGCAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTATCAGTC                        >  SRR4302532.984859/1‑94 (MQ=60)
                                                                       AAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTATCAGTCA                       >  SRR4302532.5788312/1‑94 (MQ=60)
                                                                        AGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTATCAGTCAT                      <  SRR4302532.5694036/94‑1 (MQ=60)
                                                                        AGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTATCAGTCAT                      >  SRR4302532.1674443/1‑94 (MQ=60)
                                                                          CAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTATCAGTCATAA                    >  SRR4302532.2253929/1‑94 (MQ=60)
                                                                          CAGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTATCAGTCATAA                    <  SRR4302532.4192676/94‑1 (MQ=60)
                                                                           AGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTATCAGTCATAAC                   <  SRR4302532.5736499/94‑1 (MQ=60)
                                                                           AGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCCGGGCTTTATCAGTCATAAC                   >  SRR4302532.5531199/1‑94 (MQ=60)
                                                                           AGGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTATCAGTCATAAC                   <  SRR4302532.652414/94‑1 (MQ=60)
                                                                            GGCTTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTATCAGTCATAACA                  >  SRR4302532.6299696/1‑94 (MQ=60)
                                                                               TTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTATCAGTCATAACACCA               >  SRR4302532.6303163/1‑94 (MQ=60)
                                                                               TTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTATCAGTCATAACACCA               >  SRR4302532.4225448/1‑94 (MQ=60)
                                                                               TTATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTATCAGTCATAACACCA               >  SRR4302532.6086776/1‑94 (MQ=60)
                                                                                TATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTATCAGTCATAACACCAC              <  SRR4302532.3737173/94‑1 (MQ=60)
                                                                                TATTATTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTATCAGTCATAACACCAC              <  SRR4302532.3737174/94‑1 (MQ=60)
                                                                                     TTTTTTGGCAAGGAACCCACGATGTTTGATGTCACTTTGCTGCTCCTGCTCGGGTTAGCTGCGCTGGGCTTTATCCGTCATAACACCACAGTCG         <  SRR4302532.5680386/94‑1 (MQ=60)
                                                                                     TTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTATCAGTCATAAaacactgttcc         >  SRR4302532.4126283/1‑83 (MQ=60)
                                                                                     TTTTTTGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTATCAGTCATAACACCACTGTCG         >  SRR4302532.5818281/1‑94 (MQ=60)
                                                                                          TGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTATCAGTCATAACACCACTGTCGCCGTT    <  SRR4302532.2332872/94‑1 (MQ=60)
                                                                                          TGACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTATCAGTCATAACACCACTGTCGCCGTT    >  SRR4302532.3735388/1‑94 (MQ=60)
                                                                                            GCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTATCAGTCATAACACCACTGTCGCCGTTTC  >  SRR4302532.584677/1‑94 (MQ=60)
                                                                                            ACAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTATCAGTCATAACACCACTGTCGCCGTTTC  >  SRR4302532.3071917/1‑94 (MQ=60)
                                                                                            |                                                                                             
GACAGTTCGCCTGATTTTTTATGCAAAAAACGTAAAGATTTTCTACTTCCTTCCTGCAGCAAGCGTAAAGTAAGCAGGCTTATTATTTTTTGGCAAGGAAACCACGATGTTTGATGTCACTTTGCTGATCCTGCTCGGGTTAGCTGCGCTGGGCTTTATCAGTCATAACACCACTGTCGCCGTTTC  >  NC_000913/1872270‑1872455

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑