Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAGACCTGCCGCTTCCAGAGCGTCGCGCAC  >  NC_000913/1945446‑1945632
                                                                                             |                                                                                             
CTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGG                                                                                               >  SRR4302532.5500771/1‑94 (MQ=60)
CTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGG                                                                                               >  SRR4302532.5987928/1‑94 (MQ=60)
CTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGG                                                                                               >  SRR4302532.5500773/1‑94 (MQ=60)
CTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGG                                                                                               >  SRR4302532.2859289/1‑94 (MQ=60)
 caCGACCTCATCAGAGATTTCCCCGTTATGGTTAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGG                                                                                              <  SRR4302532.4527613/92‑1 (MQ=60)
   CGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGT                                                                                            <  SRR4302532.687782/94‑1 (MQ=60)
   CGACCTCATCAGAGATTTCACCGGTATGGGAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATAGATCAGACGCATCAGTTTCGGTGGGGT                                                                                            >  SRR4302532.3060458/1‑94 (MQ=60)
     ACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTT                                                                                          >  SRR4302532.5691688/1‑94 (MQ=60)
     ACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTT                                                                                          >  SRR4302532.4114032/1‑94 (MQ=60)
      CCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTC                                                                                         >  SRR4302532.4860564/1‑94 (MQ=60)
      CCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTC                                                                                         >  SRR4302532.6143760/1‑94 (MQ=60)
       CTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCT                                                                                        <  SRR4302532.669068/94‑1 (MQ=60)
       CTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCT                                                                                        <  SRR4302532.4737844/94‑1 (MQ=60)
        TCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCCGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTG                                                                                       >  SRR4302532.4802959/1‑94 (MQ=60)
         CATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGC                                                                                      >  SRR4302532.6110345/1‑94 (MQ=60)
          ATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCA                                                                                     >  SRR4302532.5970586/1‑94 (MQ=60)
          ATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCA                                                                                     <  SRR4302532.2597556/94‑1 (MQ=60)
           TCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCTGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCAT                                                                                    <  SRR4302532.1624249/94‑1 (MQ=60)
             AGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCC                                                                                  >  SRR4302532.2124809/1‑94 (MQ=60)
                GATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATA                                                                               >  SRR4302532.2769339/1‑94 (MQ=60)
                 ATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATAT                                                                              >  SRR4302532.3392452/1‑94 (MQ=60)
                  TTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATC                                                                             <  SRR4302532.1999774/94‑1 (MQ=60)
                  TTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATC                                                                             >  SRR4302532.6073144/1‑94 (MQ=60)
                  GTTNANCGNTATGGTAAACTTNCTNCACGNCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATC                                                                             <  SRR4302532.3917216/94‑1 (MQ=60)
                   TTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCA                                                                            >  SRR4302532.1283755/1‑94 (MQ=60)
                   TTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCA                                                                            <  SRR4302532.310167/94‑1 (MQ=60)
                    TCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCCG                                                                           >  SRR4302532.5996691/1‑94 (MQ=60)
                    TCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAG                                                                           >  SRR4302532.3635057/1‑94 (MQ=60)
                    TCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAG                                                                           <  SRR4302532.829916/94‑1 (MQ=60)
                    TCACCGTTATGGTAAACTTCCTACACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAG                                                                           <  SRR4302532.2347505/94‑1 (MQ=60)
                     CACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGC                                                                          <  SRR4302532.5861045/94‑1 (MQ=60)
                     CACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCcgt                                                                          >  SRR4302532.6251086/1‑91 (MQ=60)
                     CACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGC                                                                          >  SRR4302532.1084469/1‑94 (MQ=60)
                        CGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTT                                                                       >  SRR4302532.132140/1‑94 (MQ=60)
                        CGTTATGGGAAACTTCCTGCACGTCGTCGCAATCTTCCAGCCTATCGATCCGACGCATCGGCTTCGGTGCGGTTTCTGCATacctatccgattt                                                                       >  SRR4302532.2522469/1‑81 (MQ=60)
                         GTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTG                                                                      <  SRR4302532.1940514/94‑1 (MQ=60)
                            ATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTA                                                                   <  SRR4302532.2797524/94‑1 (MQ=60)
                            ATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTA                                                                   >  SRR4302532.1067405/1‑94 (MQ=60)
                             TGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAG                                                                  <  SRR4302532.561181/94‑1 (MQ=60)
                              GGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGA                                                                 >  SRR4302532.3272032/1‑94 (MQ=60)
                              GGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAGA                                                                 >  SRR4302532.4244010/1‑94 (MQ=60)
                               GTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGAC                                                                >  SRR4302532.440221/1‑94 (MQ=60)
                               GTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAGAC                                                                <  SRR4302532.3335013/94‑1 (MQ=60)
                                TAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACG                                                               <  SRR4302532.4173786/94‑1 (MQ=60)
                                TAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACG                                                               >  SRR4302532.2521525/1‑94 (MQ=60)
                                TAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAGACG                                                               >  SRR4302532.2164518/1‑94 (MQ=60)
                                    CTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGAT                                                           <  SRR4302532.5788654/94‑1 (MQ=60)
                                    CTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGGTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGgc                                                           >  SRR4302532.4012638/1‑92 (MQ=60)
                                       CCTGCTCGTCGTCGCATTCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCAT                                                        <  SRR4302532.173979/94‑1 (MQ=60)
                                       CCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCAT                                                        >  SRR4302532.5568587/1‑94 (MQ=60)
                                       CCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCAT                                                        >  SRR4302532.3814567/1‑94 (MQ=60)
                                       CCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCAT                                                        <  SRR4302532.1659407/94‑1 (MQ=60)
                                        CTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATG                                                       <  SRR4302532.6321436/94‑1 (MQ=60)
                                         TGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATCGCAGCTTTGGTAGACGGGATCATGG                                                      >  SRR4302532.4845596/1‑94 (MQ=60)
                                         TGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGG                                                      >  SRR4302532.4845595/1‑94 (MQ=60)
                                          TCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGA                                                     <  SRR4302532.1710653/94‑1 (MQ=60)
                                          GCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGA                                                     <  SRR4302532.3796062/94‑1 (MQ=60)
                                          GCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGA                                                     >  SRR4302532.226766/1‑94 (MQ=60)
                                          GCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGA                                                     >  SRR4302532.3553670/1‑94 (MQ=60)
                                          GCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGA                                                     >  SRR4302532.2603054/1‑94 (MQ=60)
                                           CACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAA                                                    <  SRR4302532.3913876/94‑1 (MQ=60)
                                              GTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACT                                                 <  SRR4302532.5944731/94‑1 (MQ=60)
                                              GTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACT                                                 >  SRR4302532.5042243/1‑94 (MQ=60)
                                               TCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTT                                                <  SRR4302532.2312036/94‑1 (MQ=60)
                                               GCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTT                                                <  SRR4302532.2312035/94‑1 (MQ=60)
                                                 GTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTCTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAAattcg                                              >  SRR4302532.5199659/1‑89 (MQ=60)
                                                 GTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCC                                              <  SRR4302532.2177902/94‑1 (MQ=60)
                                                  TCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCG                                             <  SRR4302532.2570435/94‑1 (MQ=60)
                                                   CGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGGTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGC                                            >  SRR4302532.5580736/1‑94 (MQ=60)
                                                    ccgATCTTCCAGCATATCGATCAGACGCATCCATTTCGGTGGGGTTTCTACATCCATATCTGCTATGATAGACGGAATCATGGgaacctcagca                                           >  SRR4302532.220468/4‑83 (MQ=39)
                                                    GCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCG                                           <  SRR4302532.952275/94‑1 (MQ=60)
                                                     CAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGT                                          >  SRR4302532.2176064/1‑94 (MQ=60)
                                                     CAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGC                                          >  SRR4302532.3151201/1‑94 (MQ=60)
                                                      AATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCT                                         <  SRR4302532.1657910/94‑1 (MQ=60)
                                                      AATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCT                                         >  SRR4302532.16681/1‑94 (MQ=60)
                                                         CTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTC                                      <  SRR4302532.3326568/94‑1 (MQ=60)
                                                         CTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTC                                      >  SRR4302532.353567/1‑94 (MQ=60)
                                                          TTCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCT                                     >  SRR4302532.5401162/1‑94 (MQ=60)
                                                          TTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCT                                     >  SRR4302532.6082327/1‑94 (MQ=60)
                                                           TCCAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTG                                    >  SRR4302532.5809660/1‑94 (MQ=60)
                                                             CAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCT                                  <  SRR4302532.6261816/94‑1 (MQ=60)
                                                             CAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCT                                  <  SRR4302532.1285009/94‑1 (MQ=60)
                                                             CAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCT                                  <  SRR4302532.2021779/94‑1 (MQ=60)
                                                             CAGCATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCT                                  <  SRR4302532.434599/94‑1 (MQ=60)
                                                               GCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTT                                <  SRR4302532.2880122/94‑1 (MQ=60)
                                                                CATATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTC                               >  SRR4302532.1644139/1‑94 (MQ=60)
                                                                  TATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAG                             >  SRR4302532.5397633/1‑94 (MQ=60)
                                                                   ATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAGC                            >  SRR4302532.1047198/1‑94 (MQ=60)
                                                                   ATCGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAGC                            >  SRR4302532.5188576/1‑94 (MQ=60)
                                                                   ATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAGA                            >  SRR4302532.197792/1‑94 (MQ=60)
                                                                    TCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAGAC                           >  SRR4302532.3681310/1‑94 (MQ=60)
                                                                     CGATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAGACC                          <  SRR4302532.2496008/94‑1 (MQ=60)
                                                                      GATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAGACCT                         <  SRR4302532.1468522/94‑1 (MQ=60)
                                                                      GATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAGACCT                         <  SRR4302532.1788397/94‑1 (MQ=60)
                                                                      GATCAGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAGACCT                         >  SRR4302532.671287/1‑94 (MQ=60)
                                                                          AGACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAGACCTGCCG                     <  SRR4302532.1617779/94‑1 (MQ=60)
                                                                          AGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAGACCTGCCG                     >  SRR4302532.4268544/1‑94 (MQ=60)
                                                                            ACGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAGACCTGCCGCT                   <  SRR4302532.2531182/94‑1 (MQ=60)
                                                                             CGCATCAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAGACCTGCCGCTT                  <  SRR4302532.6179098/94‑1 (MQ=60)
                                                                               CATCAGTTTCGGTGCGTTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAATCTTCCGCGCTGTCTGCTTTCAGACCTGCCGCTTCC                <  SRR4302532.2183318/94‑1 (MQ=60)
                                                                                  CAGTTTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAGACCTGCCGCTTCCAGA             <  SRR4302532.5832733/94‑1 (MQ=60)
                                                                                    GTTTCGGTGGGGTTGCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCTCGCTGTCTGCTTTCAGACCTGCCGCTTCCAGAGC           >  SRR4302532.6170215/1‑94 (MQ=60)
                                                                                    GTGTCGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAGACCTGCCGCTTCCAGAGC           <  SRR4302532.5364037/94‑1 (MQ=60)
                                                                                      TTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAGACCTGCCGCTTCCAGAGCGT         >  SRR4302532.2584015/1‑94 (MQ=60)
                                                                                      TTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAGACCTGCCGCTTCCAGAGCGT         >  SRR4302532.2292241/1‑94 (MQ=60)
                                                                                        CGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAGACCTGCCGCTTCCAGAGCGTCG       >  SRR4302532.1690764/1‑94 (MQ=60)
                                                                                        CGGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAGACCTGCCGCTTCCAGAGCGTCG       <  SRR4302532.1887819/94‑1 (MQ=60)
                                                                                         GGTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAGACCTGCCGCTTCCAGAGCGTCGC      >  SRR4302532.3884149/1‑94 (MQ=60)
                                                                                          GTGGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAGACCTGCCGCTTCCAGAGCGTCGCG     <  SRR4302532.3963727/94‑1 (MQ=60)
                                                                                            GGGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAGACCTGCCGCTTCCAGAGCGTCGCGCA   >  SRR4302532.3994886/1‑94 (MQ=60)
                                                                                            GCGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAGACCTGCCGCTTCCAGAGCGTCGCGCA   <  SRR4302532.2464761/94‑1 (MQ=60)
                                                                                             CGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAGACCTGCCGCTTCCAGAGCGTCGCGCAC  >  SRR4302532.5609922/1‑94 (MQ=60)
                                                                                             |                                                                                             
CTGCGACCTCATCAGAGATTTCACCGTTATGGTAAACTTCCTGCACGTCGTCGCAATCTTCCAGCATATCGATCAGACGCATCAGTTTCGGTGCGGTTTCTGCATCCATATCAGCTTTGGTAGACGGGATCATGGAAACTTCCGCGCTGTCTGCTTTCAGACCTGCCGCTTCCAGAGCGTCGCGCAC  >  NC_000913/1945446‑1945632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑