Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTTTTGCATCAGCGCCTGCAAAGAAATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTATTCACCTGACCGGAGATATAGGCCTTTTGT  >  NC_000913/2134570‑2134756
                                                                                             |                                                                                             
GTTTTGCATCAGCGCCTGCAAAGAAATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCT                                                                                               <  SRR4302532.4594834/94‑1 (MQ=60)
GTTTTGCATCAGCGCCTGCAAAGAAATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCC                                                                                               >  SRR4302532.5115526/1‑94 (MQ=60)
GTTTTGCATCAGCGCCTGCAAAGAAATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCC                                                                                               >  SRR4302532.5352130/1‑94 (MQ=60)
GTTTTGCATCAGCGCCTGCAAAGAAATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCC                                                                                               >  SRR4302532.1474154/1‑94 (MQ=60)
 TTTTGCATCAGCGCCTGCAAAGAAATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTG                                                                                              >  SRR4302532.2053163/1‑94 (MQ=60)
  TTTGCATCAGCGCCTGCAAAGAAATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGC                                                                                             <  SRR4302532.1447896/94‑1 (MQ=60)
  TTTGCATCAGCGCCTGCAAAGAAATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGC                                                                                             <  SRR4302532.1271550/94‑1 (MQ=60)
   TTGCATCAGCGCCTGCAAAGAAATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCG                                                                                            <  SRR4302532.4337827/94‑1 (MQ=60)
   TTGCATCAGCGCCTGCAAAGAAATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCG                                                                                            <  SRR4302532.4604393/94‑1 (MQ=60)
   TTGCATCAGCGCCTGCAAAGAAATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGCCAGGCCACCTGCG                                                                                            >  SRR4302532.1328471/1‑94 (MQ=60)
    TGCATCAGCGCCTGCAAAGAAATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGG                                                                                           <  SRR4302532.456000/94‑1 (MQ=60)
        TCAGCGCCTGCAAAGAAATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTT                                                                                       <  SRR4302532.2258937/94‑1 (MQ=60)
           GCGCCTGCAAAGAAATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGAT                                                                                    <  SRR4302532.441700/94‑1 (MQ=60)
           GCGCCTGCAAAGAAATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGAT                                                                                    <  SRR4302532.5786038/94‑1 (MQ=60)
              CCTGCAAAGAAATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGC                                                                                 >  SRR4302532.3240739/1‑94 (MQ=60)
              CCTGCAAAGAAATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGG                                                                                 >  SRR4302532.500425/1‑94 (MQ=60)
              CCTGCAAAGAAATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGC                                                                                 >  SRR4302532.2930427/1‑94 (MQ=60)
              CCTGCAAAGAAATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGC                                                                                 >  SRR4302532.3600420/1‑94 (MQ=60)
               CTGCAAAGAAATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCG                                                                                <  SRR4302532.6199080/94‑1 (MQ=60)
                TGCAAAGAAATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGT                                                                               >  SRR4302532.3157365/1‑94 (MQ=60)
                  CAAAGAAATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCG                                                                             >  SRR4302532.356821/1‑94 (MQ=60)
                  CAAAGAAATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCG                                                                             >  SRR4302532.5886270/1‑94 (MQ=60)
                    AAGAAATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAG                                                                           >  SRR4302532.472431/1‑94 (MQ=60)
                     AGAAATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGA                                                                          <  SRR4302532.737770/94‑1 (MQ=60)
                     AGAAATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGATGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGA                                                                          >  SRR4302532.6350228/1‑94 (MQ=60)
                      GAAATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAA                                                                         >  SRR4302532.5141864/1‑94 (MQ=60)
                        AATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATA                                                                       <  SRR4302532.2998629/94‑1 (MQ=60)
                        AATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATA                                                                       <  SRR4302532.5087251/94‑1 (MQ=60)
                         ATGCTCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAG                                                                      <  SRR4302532.1648062/94‑1 (MQ=60)
                         ATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAG                                                                      <  SRR4302532.5438920/94‑1 (MQ=60)
                          TGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGT                                                                     <  SRR4302532.2687708/94‑1 (MQ=60)
                           GCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTC                                                                    <  SRR4302532.1325557/94‑1 (MQ=60)
                            CGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCA                                                                   <  SRR4302532.6340846/94‑1 (MQ=60)
                            CGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCA                                                                   <  SRR4302532.6340845/94‑1 (MQ=60)
                            CGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCA                                                                   <  SRR4302532.2215493/94‑1 (MQ=60)
                             GCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCAG                                                                  <  SRR4302532.3297080/94‑1 (MQ=60)
                             GCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAG                                                                  <  SRR4302532.3068190/94‑1 (MQ=60)
                             GCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAG                                                                  >  SRR4302532.2292213/1‑94 (MQ=60)
                             GCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAG                                                                  <  SRR4302532.1638637/94‑1 (MQ=60)
                              CTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGT                                                                 <  SRR4302532.6338282/94‑1 (MQ=60)
                              CTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGT                                                                 >  SRR4302532.2233357/1‑94 (MQ=60)
                              CTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGT                                                                 <  SRR4302532.1426379/94‑1 (MQ=60)
                               TCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGTG                                                                >  SRR4302532.1817224/1‑94 (MQ=60)
                                cctcggttttttgttgtgcccccgcggtggggccccgggcggggttgggGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGG                                                               <  SRR4302532.5528356/45‑1 (MQ=60)
                                CTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGG                                                               >  SRR4302532.2024016/1‑94 (MQ=60)
                                CTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGG                                                               <  SRR4302532.1678250/94‑1 (MQ=60)
                                CTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGG                                                               <  SRR4302532.272067/94‑1 (MQ=60)
                                 TTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGC                                                              >  SRR4302532.4040805/1‑94 (MQ=60)
                                 TTCACGACCATTGTGGGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGC                                                              <  SRR4302532.6164574/94‑1 (MQ=60)
                                  TCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCA                                                             <  SRR4302532.1685573/94‑1 (MQ=60)
                                   cacggccattgttgtTTAGCACCACGTTGCCCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCAC                                                            <  SRR4302532.1181831/79‑1 (MQ=60)
                                    ACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACG                                                           >  SRR4302532.2999158/1‑94 (MQ=60)
                                    ACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACG                                                           >  SRR4302532.715746/1‑94 (MQ=60)
                                    ACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACG                                                           >  SRR4302532.4757827/1‑94 (MQ=60)
                                    ACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACG                                                           >  SRR4302532.3370302/1‑94 (MQ=60)
                                      GACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTT                                                         >  SRR4302532.4352858/1‑94 (MQ=60)
                                      GACCAATGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTT                                                         >  SRR4302532.4172885/1‑94 (MQ=60)
                                       ACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTG                                                        <  SRR4302532.5255011/94‑1 (MQ=60)
                                       ACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTG                                                        <  SRR4302532.4095163/94‑1 (MQ=60)
                                        CCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGG                                                       >  SRR4302532.1882163/1‑94 (MQ=60)
                                        CCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGG                                                       <  SRR4302532.348111/94‑1 (MQ=60)
                                         CATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGG                                                      >  SRR4302532.1856585/1‑94 (MQ=60)
                                          ATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTG                                                     >  SRR4302532.3840793/1‑94 (MQ=60)
                                          ATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGTGTCGAGAATAGTCAGTGGCACGTTGGTG                                                     <  SRR4302532.2670829/94‑1 (MQ=60)
                                          ATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTG                                                     >  SRR4302532.5135666/1‑94 (MQ=60)
                                            TGTGTGTTAGCGCCGCGTCGCGCCAGTCAGCGGTGTCGGTCAGGCCCCCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGAT                                                   <  SRR4302532.4710794/94‑1 (MQ=60)
                                            TGTGTGTTAGCACCACGTTGCGCGAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGAT                                                   <  SRR4302532.3619896/94‑1 (MQ=60)
                                            TGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGAT                                                   <  SRR4302532.5243951/94‑1 (MQ=60)
                                              TGTGTTAGCACCAGGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGTGTCGAGAATAGTCAGTGGCACGTTGGTGATCG                                                 <  SRR4302532.2735723/94‑1 (MQ=60)
                                              TGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCG                                                 <  SRR4302532.2085643/94‑1 (MQ=60)
                                              TGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCG                                                 >  SRR4302532.1544117/1‑94 (MQ=60)
                                                   TAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGT                                            <  SRR4302532.3561594/94‑1 (MQ=60)
                                                   TAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGT                                            <  SRR4302532.1596017/94‑1 (MQ=60)
                                                   TAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGACACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGAACGTTGGGGATCGCCTGT                                            >  SRR4302532.3381645/1‑94 (MQ=60)
                                                   TAGCAACGCGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGT                                            <  SRR4302532.1596018/94‑1 (MQ=60)
                                                    AGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTT                                           >  SRR4302532.588375/1‑94 (MQ=60)
                                                    AGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGGTGGTGATCGCCTGTT                                           >  SRR4302532.539834/1‑94 (MQ=60)
                                                      CACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGA                                         >  SRR4302532.5283744/1‑94 (MQ=60)
                                                       CCCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGAC                                        <  SRR4302532.2028424/94‑1 (MQ=60)
                                                       ACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGAC                                        <  SRR4302532.3292514/94‑1 (MQ=60)
                                                           CGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGA                                    >  SRR4302532.300128/1‑94 (MQ=60)
                                                            GTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGAT                                   >  SRR4302532.3369721/1‑94 (MQ=60)
                                                             ttggcgCAGTCAGCCGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATT                                  <  SRR4302532.5178824/88‑1 (MQ=60)
                                                              TGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTT                                 <  SRR4302532.5914514/94‑1 (MQ=60)
                                                                CGCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTAT                               >  SRR4302532.3728506/1‑94 (MQ=60)
                                                                 GCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTATT                              <  SRR4302532.3013746/94‑1 (MQ=60)
                                                                 GCCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTATT                              <  SRR4302532.1856440/94‑1 (MQ=60)
                                                                  CCAGTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTATTC                             <  SRR4302532.2240128/94‑1 (MQ=60)
                                                                    AGTCAGCGGTGTCGGACAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTATTCAC                           >  SRR4302532.4390903/1‑94 (MQ=60)
                                                                     GTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTATTCACC                          >  SRR4302532.418367/1‑94 (MQ=60)
                                                                     GTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTATTCACC                          >  SRR4302532.5351072/1‑94 (MQ=60)
                                                                     GTCAGCGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTATTCACC                          >  SRR4302532.4403388/1‑94 (MQ=60)
                                                                      TCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTATTCACCT                         <  SRR4302532.2962976/94‑1 (MQ=60)
                                                                       CAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTATTCACCTG                        <  SRR4302532.5629768/94‑1 (MQ=60)
                                                                          GGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTATTCACCTGACC                     <  SRR4302532.2429419/94‑1 (MQ=60)
                                                                          CGGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTATTCACCTGACC                     >  SRR4302532.4222932/1‑94 (MQ=60)
                                                                           GGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTATTCACCTGACCG                    <  SRR4302532.2652777/94‑1 (MQ=60)
                                                                           GGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTATTCACCTGACCG                    >  SRR4302532.5635379/1‑94 (MQ=60)
                                                                           GGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTATTCACCTGACCG                    <  SRR4302532.3429043/94‑1 (MQ=60)
                                                                           GGTGTCGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTATTCACCTGACCG                    >  SRR4302532.6054305/1‑94 (MQ=60)
                                                                           GGTGTCGGTCAGGCCACCCGCGGCGTTGATCGCGCCGAGAATAGTCAGTGGCACGTTGGGGATCGCCTGTTGACCTGATTTATTCACCTGACCG                    >  SRR4302532.3691351/1‑94 (MQ=60)
                                                                              GTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTATTCACCTGACCGGAG                 >  SRR4302532.2732385/1‑94 (MQ=60)
                                                                                CGGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTATTCACCTGACCGGAGAT               <  SRR4302532.5374718/94‑1 (MQ=60)
                                                                                 GGTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTATTCACCTGACCGGAGATA              >  SRR4302532.5578581/1‑94 (MQ=60)
                                                                                  GTCAGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTATTCACCTGACCGGAGATAT             >  SRR4302532.488821/1‑94 (MQ=60)
                                                                                    CAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTATTCACCTGACCGGAGATATAG           <  SRR4302532.2218868/94‑1 (MQ=60)
                                                                                     AGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTATTCACCTGACCGGAGATATAGG          <  SRR4302532.6047880/94‑1 (MQ=60)
                                                                                     AGGCCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTATTCACCTGACAGGGGATATAGG          >  SRR4302532.1768655/1‑94 (MQ=60)
                                                                                        CCACCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTATTCACCTGACCGGAGATATAGGCCT       >  SRR4302532.3712179/1‑94 (MQ=60)
                                                                                         CACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTATTCACCTGACCGGAGATATAGGCCTT      <  SRR4302532.474128/94‑1 (MQ=60)
                                                                                          ACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTATTCACCTGACCGGAGATATAGGCCTTT     >  SRR4302532.2260075/1‑94 (MQ=60)
                                                                                          ACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTATTCACCTGACCGGAGATATAGGCCTTT     <  SRR4302532.966148/94‑1 (MQ=60)
                                                                                           CCCGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGTTGATCGCCTGTTGACCGGATTTATTCACCTGACCGGAGATATAGGCCTTTT    <  SRR4302532.1289098/94‑1 (MQ=60)
                                                                                             TGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTATTCACCTGACCGGAGATATAGGCCTTTTGT  <  SRR4302532.6004109/94‑1 (MQ=60)
                                                                                             CGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGTCTGTTGACCGGATTTATTCACCTGACCGGAGATATAGGCCTTTTGT  <  SRR4302532.5859340/94‑1 (MQ=60)
                                                                                             |                                                                                             
GTTTTGCATCAGCGCCTGCAAAGAAATGCGCTCTTCACGACCATTGTGTGTTAGCACCACGTTGCGCCAGTCAGCGGTGTCGGTCAGGCCACCTGCGGCGTTGATGGCGTCGAGAATAGTCAGTGGCACGTTGGTGATCGCCTGTTGACCGGATTTATTCACCTGACCGGAGATATAGGCCTTTTGT  >  NC_000913/2134570‑2134756

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑