Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTTTGACGGGCGAAGAAAACAGATGACGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAAGCCAATCCATAGGCAAGAAAAATA  >  NC_000913/2190606‑2190790
                                                                                           |                                                                                             
CTTTGACGGGCGAAGAAAACAGATGACGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACT                                                                                             <  SRR4302532.4141370/94‑1 (MQ=60)
  TTGACGGGCGAAGAAAACAGATGACGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGC                                                                                           >  SRR4302532.4652147/1‑94 (MQ=60)
   TGACGGGCGAAGAAAACAGATGACGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCA                                                                                          >  SRR4302532.3299584/1‑94 (MQ=60)
    GACGGGCGAAGAAAACAGATGACGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCAT                                                                                         >  SRR4302532.5530561/1‑94 (MQ=60)
     ACGGGCGAAGAAAACAGATGACGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATG                                                                                        <  SRR4302532.717036/94‑1 (MQ=60)
      CGGGCGAAGAAAACAGATGACGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGT                                                                                       <  SRR4302532.504830/94‑1 (MQ=60)
       GGGCGAAGAAAACAGATGACGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTT                                                                                      <  SRR4302532.1505774/94‑1 (MQ=60)
        GGCGAAGAAAACAGATGACGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTG                                                                                     <  SRR4302532.4042870/94‑1 (MQ=60)
          CGAAGAAAACAGATGACGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGG                                                                                   >  SRR4302532.4554379/1‑94 (MQ=60)
          CGAAGAAAACAGATGACGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGG                                                                                   >  SRR4302532.3296838/1‑94 (MQ=60)
           GAAGAAAACAGATGACGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGG                                                                                  >  SRR4302532.3036985/1‑94 (MQ=60)
           GAAGAAAACAGATGACGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGG                                                                                  <  SRR4302532.1767568/94‑1 (MQ=60)
           GAAGAAAACAGATGACGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGG                                                                                  <  SRR4302532.2950269/94‑1 (MQ=60)
           GAAGAAAACAGATGACGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGG                                                                                  >  SRR4302532.4349264/1‑94 (MQ=60)
           GAAGAAAACAGATGACGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGG                                                                                  >  SRR4302532.5258486/1‑94 (MQ=60)
             AGAAAACAGATGACGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGC                                                                                >  SRR4302532.1185299/1‑94 (MQ=60)
              GAAAACAGATGACGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGAC                                                                               >  SRR4302532.5019920/1‑94 (MQ=60)
               AAAACAGATGACGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACT                                                                              <  SRR4302532.5388482/94‑1 (MQ=60)
                 AACAGATGACGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGA                                                                            <  SRR4302532.933584/94‑1 (MQ=60)
                 AACAGATGACGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGA                                                                            <  SRR4302532.2407194/94‑1 (MQ=60)
                   CAGATGACGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCTTAGCCATGCTGCATGTTGGGGGACTGATC                                                                          >  SRR4302532.1146063/1‑94 (MQ=60)
                   CAGATGACGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATC                                                                          >  SRR4302532.2046804/1‑94 (MQ=60)
                     GATGACGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCT                                                                        <  SRR4302532.42540/94‑1 (MQ=60)
                     GATGACGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCT                                                                        <  SRR4302532.5672423/94‑1 (MQ=60)
                      ATGACGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTG                                                                       >  SRR4302532.2194416/1‑94 (MQ=60)
                        GACGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCC                                                                     >  SRR4302532.990270/1‑94 (MQ=60)
                         ACGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCA                                                                    <  SRR4302532.4202077/94‑1 (MQ=60)
                          CGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCAT                                                                   <  SRR4302532.4906347/94‑1 (MQ=60)
                          CGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCAT                                                                   >  SRR4302532.4933468/1‑94 (MQ=60)
                           GGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACatcccgaagatcggaagagcgtcgtgta                                                                  >  SRR4302532.3328920/1‑66 (MQ=60)
                           GGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCATT                                                                  >  SRR4302532.5151508/1‑94 (MQ=60)
                            GGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGTCATTA                                                                 >  SRR4302532.1836200/1‑94 (MQ=60)
                            GGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCATTA                                                                 >  SRR4302532.3148472/1‑94 (MQ=60)
                               GTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATC                                                              <  SRR4302532.2583612/94‑1 (MQ=60)
                                TCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCATTAATCG                                                             <  SRR4302532.2594324/94‑1 (MQ=60)
                                  AACATTATACTTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCATTAATCGCT                                                           <  SRR4302532.3670052/94‑1 (MQ=60)
                                  AACATTATACGTTAACTGTCCATAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCTTTTATCGCT                                                           >  SRR4302532.5684502/1‑94 (MQ=60)
                                  AACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCATTAATCGCT                                                           >  SRR4302532.5848909/1‑94 (MQ=60)
                                  AACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCATTAATCGCT                                                           >  SRR4302532.5070397/1‑94 (MQ=60)
                                    CATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAA                                                         >  SRR4302532.6282577/1‑94 (MQ=60)
                                    AATTATTCGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAA                                                         <  SRR4302532.624351/94‑1 (MQ=60)
                                     ATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAAT                                                        >  SRR4302532.1192403/1‑94 (MQ=60)
                                     ATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAAT                                                        >  SRR4302532.1192404/1‑94 (MQ=60)
                                     ATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAAT                                                        >  SRR4302532.4769219/1‑94 (MQ=60)
                                        ATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGTCATTAATCGCTAATGTG                                                     >  SRR4302532.2192793/1‑94 (MQ=60)
                                        ATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTG                                                     >  SRR4302532.4809520/1‑94 (MQ=60)
                                        ATACGTAAACTGACCACGATGCTGTTGAGGTTGACCATTAACAATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAAACGCAAATGAG                                                     <  SRR4302532.5678684/94‑1 (MQ=60)
                                          ACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGATTGATCCTGCCATTAATCGCTAATGTGGC                                                   <  SRR4302532.5419855/94‑1 (MQ=60)
                                           CGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCA                                                  <  SRR4302532.5741991/94‑1 (MQ=60)
                                            GTTAACTGGCCACACTGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAG                                                 >  SRR4302532.4040940/1‑94 (MQ=60)
                                            GTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAG                                                 <  SRR4302532.4511951/94‑1 (MQ=60)
                                            GTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAG                                                 <  SRR4302532.2715285/94‑1 (MQ=60)
                                            GTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAG                                                 >  SRR4302532.3480713/1‑94 (MQ=60)
                                             TTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGT                                                <  SRR4302532.1327843/94‑1 (MQ=60)
                                              TAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTC                                               >  SRR4302532.3508013/1‑94 (MQ=60)
                                                ACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTC                                             >  SRR4302532.5850586/1‑94 (MQ=60)
                                                 CTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCT                                            >  SRR4302532.3550585/1‑94 (MQ=60)
                                                 CTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCT                                            >  SRR4302532.2797841/1‑94 (MQ=60)
                                                  TGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTG                                           <  SRR4302532.1806609/94‑1 (MQ=60)
                                                  TGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTG                                           <  SRR4302532.3510557/94‑1 (MQ=60)
                                                     CCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAG                                        <  SRR4302532.862485/94‑1 (MQ=60)
                                                      CACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGA                                       >  SRR4302532.3081118/1‑94 (MQ=60)
                                                       ACAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAG                                      <  SRR4302532.1257728/94‑1 (MQ=60)
                                                        CAATGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGA                                     >  SRR4302532.2398846/1‑94 (MQ=60)
                                                        CAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGA                                     <  SRR4302532.1488215/94‑1 (MQ=60)
                                                        CAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGA                                     >  SRR4302532.4609215/1‑94 (MQ=60)
                                                           TGCTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATG                                  >  SRR4302532.3691126/1‑94 (MQ=60)
                                                             cgggTGAGGTTGACCATTAACCACAGCCATACTGCATGTGGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCG                                <  SRR4302532.3657037/90‑1 (MQ=60)
                                                             CTGTTGAGGTTGACCATTACCCATAGCCATACGGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCG                                <  SRR4302532.3657036/94‑1 (MQ=60)
                                                             CTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCG                                <  SRR4302532.5542580/94‑1 (MQ=60)
                                                             CTGTTGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCG                                >  SRR4302532.6222072/1‑94 (MQ=60)
                                                               GTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGG                              <  SRR4302532.2745439/94‑1 (MQ=60)
                                                                TTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGA                             >  SRR4302532.6316520/1‑94 (MQ=60)
                                                                TTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGA                             >  SRR4302532.6159019/1‑94 (MQ=60)
                                                                 TGAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAG                            <  SRR4302532.1924991/94‑1 (MQ=60)
                                                                 TGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAG                            <  SRR4302532.3169370/94‑1 (MQ=60)
                                                                  GAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGA                           >  SRR4302532.3456434/1‑94 (MQ=60)
                                                                  GAGGTTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGA                           >  SRR4302532.487913/1‑94 (MQ=60)
                                                                  GAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGA                           <  SRR4302532.2506052/94‑1 (MQ=60)
                                                                   AGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAA                          <  SRR4302532.5154423/94‑1 (MQ=60)
                                                                   AGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAA                          <  SRR4302532.6340181/94‑1 (MQ=60)
                                                                    GGTTGACCATTACCCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAAG                         <  SRR4302532.5574325/94‑1 (MQ=60)
                                                                    GGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAAG                         >  SRR4302532.4189573/1‑94 (MQ=60)
                                                                      TTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAAGCC                       <  SRR4302532.1664980/94‑1 (MQ=60)
                                                                      TTGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAAGCC                       <  SRR4302532.3255062/94‑1 (MQ=60)
                                                                       TGACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAAGCCA                      >  SRR4302532.4490438/1‑94 (MQ=60)
                                                                       TGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAAGCCA                      >  SRR4302532.2863560/1‑94 (MQ=60)
                                                                       TGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAAGCCA                      >  SRR4302532.6107128/1‑94 (MQ=60)
                                                                         ACCATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAAGCCAAT                    <  SRR4302532.1703657/94‑1 (MQ=60)
                                                                          CCATTAACAATAGCCATGCTGAATGTGGGGGGTCTGACCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAAGCCAATC                   <  SRR4302532.3895691/94‑1 (MQ=60)
                                                                           CATTAACCATAGCCATGCTGCATGTTGGGGGGCTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAAGCCAATCC                  >  SRR4302532.946153/1‑94 (MQ=60)
                                                                           CATTAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAAGCCAATCC                  <  SRR4302532.46268/94‑1 (MQ=60)
                                                                              TAACCATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGTCAGTCTCTGAAGAGAATGCGGGAGAAGCCAATCCATA               <  SRR4302532.114245/94‑1 (MQ=60)
                                                                              TAACCATAGCAATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAAGCCAATCCATA               <  SRR4302532.5951656/94‑1 (MQ=60)
                                                                               AACCATAGCCATACGGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAAGCCAATCCATAG              <  SRR4302532.1726320/94‑1 (MQ=60)
                                                                                ACCATAGCCATCCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAAGCCAATCCATAGG             <  SRR4302532.5880144/94‑1 (MQ=60)
                                                                                ACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAAGCCAATCCATAGG             <  SRR4302532.1928863/94‑1 (MQ=60)
                                                                                ACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAAGCCAATCCATAGG             <  SRR4302532.4071696/94‑1 (MQ=60)
                                                                                ACCATACCCAGGCTGCATGTTGGGGGACTTATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAAGCCAATCCATAGG             <  SRR4302532.2685679/94‑1 (MQ=60)
                                                                                 CCATAGCGATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAAGCCAATCCATAGGC            >  SRR4302532.6182180/1‑94 (MQ=60)
                                                                                 CCATAGCATTGCTGCATGTGGGGGGACTAATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAAGCCAATCCATAGGC            <  SRR4302532.2469292/94‑1 (MQ=60)
                                                                                   ATAGCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAAGCCAATCCATAGGCAA          >  SRR4302532.1579222/1‑94 (MQ=60)
                                                                                    TAGCCATTTTGCAGGTTGGGGGACTGATCCTGCCATTAATCGCTAAGTTGGCAGTCTCTGAAGAGAATGCGGGAGAAGCCAATCCATAGGCAAG         <  SRR4302532.5204247/94‑1 (MQ=60)
                                                                                      GCCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAAGCCAATCCATAGGCAAGAA       <  SRR4302532.4475422/94‑1 (MQ=60)
                                                                                      GCCATACTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAAGCCAATCCATAGGCAAGAA       >  SRR4302532.553630/1‑94 (MQ=60)
                                                                                       CCATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAAGCCAATCCATAGGCAAGAAA      >  SRR4302532.3394231/1‑94 (MQ=60)
                                                                                         ATGCTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAAGCCAATCCATAGGCAAGAAAAA    >  SRR4302532.5767775/1‑94 (MQ=60)
                                                                                          TGCTGCATGTGGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAAGCCAATCCATAGGCAAGAAAAAT   <  SRR4302532.61574/94‑1 (MQ=60)
                                                                                           ACTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAAGCCAATCCATAGGCAAGAAAAATA  <  SRR4302532.4898619/94‑1 (MQ=60)
                                                                                           |                                                                                             
CTTTGACGGGCGAAGAAAACAGATGACGGGTGTCAACATTATACGTTAACTGACCACAATGCTGTTGAGGTTGACCATTAACCATAGCCATACTGCATGTTGGGGGACTGATCCTGCCATTAATCGCTAATGTGGCAGTCTCTGAAGAGAATGCGGGAGAAGCCAATCCATAGGCAAGAAAAATA  >  NC_000913/2190606‑2190790

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑