Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAAGCGAACGA  >  NC_000913/2288214‑2288400
                                                                                             |                                                                                             
TATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCG                                                                                               <  SRR4302532.5320942/94‑1 (MQ=60)
  TGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACA                                                                                             >  SRR4302532.4345480/1‑94 (MQ=60)
   GAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAA                                                                                            >  SRR4302532.3355879/1‑94 (MQ=60)
    AAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAG                                                                                           <  SRR4302532.1634294/94‑1 (MQ=60)
     AATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGT                                                                                          <  SRR4302532.5098894/94‑1 (MQ=60)
     AATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGT                                                                                          <  SRR4302532.4213457/94‑1 (MQ=60)
     AATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTGTTTAAAAACTGTTTAAAGAAATGCGCAAGT                                                                                          <  SRR4302532.5912579/94‑1 (MQ=60)
       TTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTAT                                                                                        <  SRR4302532.6081395/94‑1 (MQ=60)
       TTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTAT                                                                                        >  SRR4302532.807209/1‑94 (MQ=60)
        TAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATT                                                                                       <  SRR4302532.1146549/94‑1 (MQ=60)
         AATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTG                                                                                      <  SRR4302532.3710534/94‑1 (MQ=60)
          ATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGT                                                                                     <  SRR4302532.240201/94‑1 (MQ=60)
             GCTGTTAAAAGCATTGGGTACAGAAAATACGCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGAT                                                                                  <  SRR4302532.6220012/94‑1 (MQ=60)
              CTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATT                                                                                 <  SRR4302532.5408707/94‑1 (MQ=60)
               TGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTG                                                                                >  SRR4302532.5128197/1‑94 (MQ=60)
                  TAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATT                                                                             >  SRR4302532.5253167/1‑94 (MQ=60)
                   AAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTT                                                                            <  SRR4302532.3463290/94‑1 (MQ=60)
                   AAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTT                                                                            <  SRR4302532.2624277/94‑1 (MQ=60)
                   AAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTT                                                                            >  SRR4302532.1111883/1‑94 (MQ=60)
                         ATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGT                                                                      >  SRR4302532.3809112/1‑94 (MQ=60)
                         ATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGT                                                                      >  SRR4302532.1994288/1‑94 (MQ=60)
                          TTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTT                                                                     >  SRR4302532.150040/1‑94 (MQ=60)
                           TGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTG                                                                    <  SRR4302532.3175172/94‑1 (MQ=60)
                           TGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTG                                                                    <  SRR4302532.6312226/94‑1 (MQ=60)
                            GGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGT                                                                   <  SRR4302532.89856/94‑1 (MQ=60)
                              GTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTT                                                                 >  SRR4302532.5369666/1‑94 (MQ=60)
                              GTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTT                                                                 >  SRR4302532.1013066/1‑94 (MQ=60)
                               TACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTT                                                                >  SRR4302532.6036359/1‑94 (MQ=60)
                               TACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTT                                                                <  SRR4302532.1561739/94‑1 (MQ=60)
                               GACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTT                                                                <  SRR4302532.5402047/94‑1 (MQ=60)
                                ACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTT                                                               >  SRR4302532.3852888/1‑94 (MQ=60)
                                ACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTT                                                               <  SRR4302532.5988830/94‑1 (MQ=60)
                                ACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTGGTTTTT                                                               <  SRR4302532.6218310/94‑1 (MQ=60)
                                 CAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTC                                                              <  SRR4302532.620772/94‑1 (MQ=60)
                                  AGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCT                                                             >  SRR4302532.1748101/1‑94 (MQ=60)
                                  AGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCT                                                             <  SRR4302532.5826701/94‑1 (MQ=60)
                                   GAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTT                                                            >  SRR4302532.2791557/1‑94 (MQ=60)
                                    AAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTG                                                           <  SRR4302532.1053540/94‑1 (MQ=60)
                                         ACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAG                                                      <  SRR4302532.5919741/94‑1 (MQ=60)
                                         ACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAG                                                      >  SRR4302532.1568302/1‑94 (MQ=60)
                                         ACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAG                                                      >  SRR4302532.3900954/1‑94 (MQ=60)
                                           CCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAA                                                    <  SRR4302532.3126503/94‑1 (MQ=60)
                                            CATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAG                                                   <  SRR4302532.4056655/94‑1 (MQ=60)
                                            CATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAG                                                   <  SRR4302532.173382/94‑1 (MQ=60)
                                            CATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAG                                                   <  SRR4302532.4120993/94‑1 (MQ=60)
                                             ATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGC                                                  >  SRR4302532.5121673/1‑94 (MQ=60)
                                                GCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGA                                               <  SRR4302532.3433507/94‑1 (MQ=60)
                                                GCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGA                                               <  SRR4302532.3433508/94‑1 (MQ=60)
                                                GCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGA                                               <  SRR4302532.1858598/94‑1 (MQ=60)
                                                 CTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGAT                                              <  SRR4302532.1921001/94‑1 (MQ=60)
                                                 CTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGAT                                              <  SRR4302532.3624111/94‑1 (MQ=60)
                                                  TCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATG                                             >  SRR4302532.3722591/1‑94 (MQ=60)
                                                    CATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCA                                           >  SRR4302532.140430/1‑94 (MQ=60)
                                                    CATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCA                                           <  SRR4302532.3544339/94‑1 (MQ=60)
                                                    CATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCA                                           >  SRR4302532.1043688/1‑94 (MQ=60)
                                                    CATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCA                                           >  SRR4302532.1840643/1‑94 (MQ=60)
                                                    CATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCA                                           >  SRR4302532.5199036/1‑94 (MQ=60)
                                                     ATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAA                                          >  SRR4302532.1016542/1‑94 (MQ=60)
                                                          CGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTC                                     <  SRR4302532.3582596/94‑1 (MQ=60)
                                                           GGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGGACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCC                                    >  SRR4302532.679333/1‑94 (MQ=60)
                                                           GGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCC                                    <  SRR4302532.3246403/94‑1 (MQ=60)
                                                           GGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCC                                    <  SRR4302532.2874228/94‑1 (MQ=60)
                                                             AGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGT                                  <  SRR4302532.4387493/94‑1 (MQ=60)
                                                              GTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTC                                 <  SRR4302532.482328/94‑1 (MQ=60)
                                                              GTCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTC                                 <  SRR4302532.482327/94‑1 (MQ=60)
                                                              GTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTC                                 >  SRR4302532.5080225/1‑94 (MQ=60)
                                                               TCAGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCT                                <  SRR4302532.4466579/94‑1 (MQ=60)
                                                                CAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTT                               <  SRR4302532.5356565/94‑1 (MQ=60)
                                                                 AGTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTT                              <  SRR4302532.3310357/94‑1 (MQ=60)
                                                                 AGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTT                              >  SRR4302532.4615287/1‑94 (MQ=60)
                                                                 AGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTT                              >  SRR4302532.6304243/1‑94 (MQ=60)
                                                                  GTTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTA                             <  SRR4302532.5777877/94‑1 (MQ=60)
                                                                  GTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTA                             >  SRR4302532.731092/1‑94 (MQ=60)
                                                                   TTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTAT                            >  SRR4302532.1410912/1‑94 (MQ=60)
                                                                   TTTTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTAT                            >  SRR4302532.4883124/1‑94 (MQ=60)
                                                                   TTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTAT                            <  SRR4302532.4881594/94‑1 (MQ=60)
                                                                     TTTAAAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAA                          >  SRR4302532.3518897/1‑94 (MQ=60)
                                                                     TTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAA                          <  SRR4302532.6351047/94‑1 (MQ=60)
                                                                     TTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAA                          <  SRR4302532.2240/94‑1 (MQ=60)
                                                                      TTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAAT                         <  SRR4302532.3292899/94‑1 (MQ=60)
                                                                      TTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAAT                         >  SRR4302532.145703/1‑94 (MQ=60)
                                                                       TAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATG                        >  SRR4302532.4401189/1‑94 (MQ=60)
                                                                       TAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATG                        >  SRR4302532.2261360/1‑94 (MQ=60)
                                                                        AAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGA                       >  SRR4302532.306366/1‑94 (MQ=60)
                                                                         AAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAA                      >  SRR4302532.5998619/1‑94 (MQ=60)
                                                                         AAAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAA                      >  SRR4302532.1864176/1‑94 (MQ=60)
                                                                         AAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAA                      >  SRR4302532.5273724/1‑94 (MQ=60)
                                                                         AAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAA                      >  SRR4302532.3778683/1‑94 (MQ=60)
                                                                         AAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAA                      >  SRR4302532.2994460/1‑94 (MQ=60)
                                                                          AAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAA                     <  SRR4302532.5014124/94‑1 (MQ=60)
                                                                          AAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAA                     >  SRR4302532.1916756/1‑94 (MQ=60)
                                                                          AAACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAA                     <  SRR4302532.3283911/94‑1 (MQ=60)
                                                                          AAACTGTTTAAAGAAAAGCGCAAGTATTGTGATTGATTTTTTAGTTGATTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAAAGAAA                     <  SRR4302532.5682336/94‑1 (MQ=60)
                                                                           AACTGTTTAAAGAAATGCGGAAGTATTGCGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAAGTCCGTCTTTATAATGAAAA                    >  SRR4302532.614906/1‑94 (MQ=60)
                                                                           AACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAA                    >  SRR4302532.614905/1‑94 (MQ=60)
                                                                           AACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAA                    >  SRR4302532.1085034/1‑94 (MQ=60)
                                                                            ACTGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAAT                   <  SRR4302532.4330636/94‑1 (MQ=60)
                                                                              TGTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGA                 >  SRR4302532.3388714/1‑94 (MQ=60)
                                                                               GTTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGAT                <  SRR4302532.954031/94‑1 (MQ=60)
                                                                               GTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGAT                >  SRR4302532.1393794/1‑94 (MQ=60)
                                                                               GTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGAT                <  SRR4302532.5305252/94‑1 (MQ=60)
                                                                                TTTAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATG               >  SRR4302532.5632830/1‑94 (MQ=60)
                                                                                 TTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGC              >  SRR4302532.2716713/1‑94 (MQ=60)
                                                                                 TTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGC              >  SRR4302532.4588511/1‑94 (MQ=60)
                                                                                 TTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGC              >  SRR4302532.4588512/1‑94 (MQ=60)
                                                                                  TAAAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCC             >  SRR4302532.1760711/1‑94 (MQ=60)
                                                                                    AAGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAA           <  SRR4302532.1503944/94‑1 (MQ=60)
                                                                                     AGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAA          >  SRR4302532.2016625/1‑94 (MQ=60)
                                                                                     AGAAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAA          >  SRR4302532.2964169/1‑94 (MQ=60)
                                                                                     AGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAA          >  SRR4302532.2501221/1‑94 (MQ=60)
                                                                                      GAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAAG         <  SRR4302532.2952623/94‑1 (MQ=60)
                                                                                       AAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAAGC        >  SRR4302532.4946875/1‑94 (MQ=60)
                                                                                       AAATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAAGC        >  SRR4302532.4899642/1‑94 (MQ=60)
                                                                                       AAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAAGC        >  SRR4302532.5493335/1‑94 (MQ=60)
                                                                                        AATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAAGCG       <  SRR4302532.4496544/94‑1 (MQ=60)
                                                                                        AATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAAGCG       <  SRR4302532.3304635/94‑1 (MQ=60)
                                                                                        AATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAAGCG       >  SRR4302532.416669/1‑94 (MQ=60)
                                                                                        AATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAAGCG       <  SRR4302532.4147980/94‑1 (MQ=60)
                                                                                         ATGCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAAGCGA      >  SRR4302532.178682/1‑94 (MQ=60)
                                                                                           GCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAAGCGAAC    >  SRR4302532.2821155/1‑94 (MQ=60)
                                                                                           GCGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAAGCGAAC    <  SRR4302532.3732516/94‑1 (MQ=60)
                                                                                            CGCAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAAGCGAACG   <  SRR4302532.5766676/94‑1 (MQ=60)
                                                                                             ACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAAGCGAACGA  <  SRR4302532.4286179/94‑1 (MQ=60)
                                                                                             |                                                                                             
TATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTTATAATGAAAATGATGCCAAAGCGAACGA  >  NC_000913/2288214‑2288400

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑