Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCCGATCACTTTAACATCGACACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCGATATATGTTGTAACTGCAAGGTAC  >  NC_000913/2331325‑2331509
                                                                                           |                                                                                             
GCCGATCACTTTAACATCGACACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAG                                                                                             >  SRR4302532.3375955/1‑94 (MQ=60)
 CCGATCACTTTAACATCGACACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGA                                                                                            >  SRR4302532.2559339/1‑94 (MQ=60)
  cgatcatataaacaacgacactaccgccggcgcaatgTAGCGGGCGACCGGTAAAAATATACAAGCGGGTGTGGTAGATTTCGCTTTCGTAGAA                                                                                           <  SRR4302532.2464838/57‑1 (MQ=60)
  CGATCACTTTAACATCGACACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAA                                                                                           >  SRR4302532.2778442/1‑94 (MQ=60)
  CGATCACTTTAACATCGACACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAA                                                                                           >  SRR4302532.2900721/1‑94 (MQ=60)
  CGATCACTTTAACATCGACACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAA                                                                                           >  SRR4302532.3980546/1‑94 (MQ=60)
  CGATCACTTTAACATCGACACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAA                                                                                           >  SRR4302532.5235909/1‑94 (MQ=60)
   GATCACTTTAACATCGACACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAG                                                                                          <  SRR4302532.4985704/94‑1 (MQ=60)
    ATCACTTTAACATCGACACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGA                                                                                         >  SRR4302532.223726/1‑94 (MQ=60)
     TCACTTTAACATCGCCACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAA                                                                                        <  SRR4302532.4925395/94‑1 (MQ=60)
     TCACTTTAACATCGACACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAA                                                                                        <  SRR4302532.2026497/94‑1 (MQ=60)
      CACTTTAACATCGACACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAG                                                                                       >  SRR4302532.3065363/1‑94 (MQ=60)
        CTTTAACATCGACACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTT                                                                                     >  SRR4302532.2938586/1‑94 (MQ=60)
         TTTAACATCGACACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTC                                                                                    <  SRR4302532.1570361/94‑1 (MQ=60)
          TTAACATCGACACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCT                                                                                   <  SRR4302532.1819011/94‑1 (MQ=60)
          TTAACATCGACACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCT                                                                                   <  SRR4302532.1115324/94‑1 (MQ=60)
          TTAACATCGACACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCT                                                                                   <  SRR4302532.5217494/94‑1 (MQ=60)
          TTAACATCGACACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCT                                                                                   <  SRR4302532.5111490/94‑1 (MQ=60)
          TTAACATCGACACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCT                                                                                   >  SRR4302532.1792543/1‑94 (MQ=60)
           TAACATCGACACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTC                                                                                  <  SRR4302532.2869202/94‑1 (MQ=60)
             ACATCGACACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGG                                                                                <  SRR4302532.2241725/94‑1 (MQ=60)
             ACATCGACACGATCGCCGGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGG                                                                                <  SRR4302532.4037106/94‑1 (MQ=60)
              CATCGACACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAACATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGA                                                                               <  SRR4302532.5678356/94‑1 (MQ=60)
                 CGACACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGAC                                                                            <  SRR4302532.2326345/94‑1 (MQ=60)
                 CGACACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGAA                                                                            >  SRR4302532.4287503/1‑94 (MQ=60)
                 CGACACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGAC                                                                            <  SRR4302532.4749860/94‑1 (MQ=60)
                  GACACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGAGTTGTAGATTTCGCTTTCGCAGAAGAAGATCTCGGAGACA                                                                           >  SRR4302532.3542217/1‑94 (MQ=60)
                   ACATGATCGCCTGCGCGTTATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGGTGGAGATTTCGCCTTCGCAGAAGTAGGGCTCGGAGACAA                                                                          >  SRR4302532.5685478/1‑94 (MQ=55)
                    CACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAA                                                                         >  SRR4302532.1861502/1‑94 (MQ=60)
                    CACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCAGAGACAAA                                                                         >  SRR4302532.4536788/1‑94 (MQ=60)
                     ACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAA                                                                        <  SRR4302532.4123233/94‑1 (MQ=60)
                      CGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAA                                                                       >  SRR4302532.4540590/1‑94 (MQ=60)
                       GATCGCCTGCGCGGTATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAAC                                                                      <  SRR4302532.463703/94‑1 (MQ=60)
                       GATCGCCTGCGCGGTATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAAC                                                                      <  SRR4302532.463704/94‑1 (MQ=60)
                       GATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAAC                                                                      <  SRR4302532.5695508/94‑1 (MQ=60)
                       GATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAAC                                                                      <  SRR4302532.5596564/94‑1 (MQ=60)
                       GAGCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGGTCTCGGAGACAAAAAC                                                                      >  SRR4302532.3976734/1‑94 (MQ=60)
                        gactcatgcgcgatctaactGGCGATCGGTAAAAATAAGCAAGCGGATGTTGTAGATATCGCTTTCGGAGAAGAAGTTCTCGGAGACAAAAGCG                                                                     <  SRR4302532.864831/74‑1 (MQ=58)
                         TCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAACGC                                                                    <  SRR4302532.2483336/94‑1 (MQ=60)
                          CGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAACGCC                                                                   >  SRR4302532.4302241/1‑94 (MQ=60)
                           GCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCG                                                                  <  SRR4302532.877603/94‑1 (MQ=60)
                             CTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCC                                                                <  SRR4302532.2779022/94‑1 (MQ=60)
                                CGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTC                                                             >  SRR4302532.4186559/1‑94 (MQ=60)
                                CGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTC                                                             <  SRR4302532.915578/94‑1 (MQ=60)
                                 GCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCA                                                            >  SRR4302532.1413221/1‑94 (MQ=60)
                                  CGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAG                                                           >  SRR4302532.1040812/1‑94 (MQ=60)
                                     TATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCAT                                                        >  SRR4302532.272577/1‑94 (MQ=60)
                                     TATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCAT                                                        <  SRR4302532.2437113/94‑1 (MQ=60)
                                     TATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCAT                                                        <  SRR4302532.2329558/94‑1 (MQ=60)
                                      ATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATC                                                       >  SRR4302532.4823381/1‑94 (MQ=60)
                                      ATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATC                                                       <  SRR4302532.4691832/94‑1 (MQ=60)
                                      ATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATC                                                       <  SRR4302532.4691833/94‑1 (MQ=60)
                                      ATAGCGGGCGATCAGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATC                                                       <  SRR4302532.3475753/94‑1 (MQ=60)
                                         GCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTT                                                    <  SRR4302532.1246998/94‑1 (MQ=60)
                                           GGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTAC                                                  <  SRR4302532.5530407/94‑1 (MQ=60)
                                            GGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACC                                                 <  SRR4302532.4397994/94‑1 (MQ=60)
                                            GGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACC                                                 <  SRR4302532.5551915/94‑1 (MQ=60)
                                             GCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCC                                                <  SRR4302532.1750415/94‑1 (MQ=60)
                                              GGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCA                                               <  SRR4302532.611200/94‑1 (MQ=60)
                                                ATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGA                                             >  SRR4302532.686269/1‑94 (MQ=60)
                                                ATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGA                                             >  SRR4302532.2156472/1‑94 (MQ=60)
                                                  CGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAAT                                           <  SRR4302532.2278621/94‑1 (MQ=60)
                                                  CGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAAT                                           >  SRR4302532.2803736/1‑94 (MQ=60)
                                                   GGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATG                                          <  SRR4302532.151625/94‑1 (MQ=60)
                                                   GGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATG                                          <  SRR4302532.1060056/94‑1 (MQ=60)
                                                      AAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTAT                                       >  SRR4302532.2698781/1‑94 (MQ=60)
                                                      AAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTAT                                       <  SRR4302532.2544570/94‑1 (MQ=60)
                                                      AAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTAT                                       <  SRR4302532.4703697/94‑1 (MQ=60)
                                                      AAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTAT                                       >  SRR4302532.1415527/1‑94 (MQ=60)
                                                      AAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTAT                                       >  SRR4302532.1415526/1‑94 (MQ=60)
                                                       AAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTTGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATG                                      <  SRR4302532.3248664/94‑1 (MQ=60)
                                                       AAAATATACAAGCGGGGGTTGCAGATTTCGCTTTCGCAGAAGAAGTTCTCATAGACATAAACGCCGCCTTCAGCATCCTTACCCAGAACGTATG                                      >  SRR4302532.6004228/1‑94 (MQ=60)
                                                        AAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGA                                     <  SRR4302532.96865/94‑1 (MQ=60)
                                                           AATACAAGGGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACG                                  <  SRR4302532.5061565/94‑1 (MQ=60)
                                                             TACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTT                                <  SRR4302532.3573625/94‑1 (MQ=60)
                                                              ACAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTC                               <  SRR4302532.323355/94‑1 (MQ=60)
                                                               CAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCT                              >  SRR4302532.714308/1‑94 (MQ=60)
                                                               CAAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACTCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCT                              <  SRR4302532.2418119/94‑1 (MQ=60)
                                                                AAGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTG                             <  SRR4302532.4249674/94‑1 (MQ=60)
                                                                 AGCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGG                            <  SRR4302532.6185755/94‑1 (MQ=60)
                                                                  GCGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGC                           <  SRR4302532.2937961/94‑1 (MQ=60)
                                                                   CGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCG                          >  SRR4302532.5538650/1‑94 (MQ=60)
                                                                   CGGGTGTTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCG                          >  SRR4302532.3969995/1‑94 (MQ=60)
                                                                    GGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCGA                         <  SRR4302532.3518747/94‑1 (MQ=60)
                                                                       TGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTGCCCAGAATGTATGAACGTTCTGGCGATAT                      <  SRR4302532.4502735/94‑1 (MQ=60)
                                                                        GTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCGATATA                     >  SRR4302532.3726506/1‑94 (MQ=60)
                                                                         TTGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCGATATAT                    <  SRR4302532.2787303/94‑1 (MQ=60)
                                                                          TGTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCGATATATG                   >  SRR4302532.6010897/1‑94 (MQ=60)
                                                                           TTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCGATATATGT                  <  SRR4302532.3960793/94‑1 (MQ=60)
                                                                           GTAGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCGATATATGT                  >  SRR4302532.4382379/1‑94 (MQ=60)
                                                                             AGATTTCGCTTTCGTAGAAGAAGGTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCGATATATGTTG                >  SRR4302532.1992704/1‑94 (MQ=60)
                                                                             AGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCGATATATGTTG                <  SRR4302532.1974181/94‑1 (MQ=60)
                                                                             AGATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCGATATATGTTG                <  SRR4302532.4372575/94‑1 (MQ=60)
                                                                              GATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCGATATATGTTGT               <  SRR4302532.320995/94‑1 (MQ=60)
                                                                              GATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCGATATATGTTGT               <  SRR4302532.4883606/94‑1 (MQ=60)
                                                                               ATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAACAACGCCGCCTTCAGCATCCTTACGCAGAATGTATGAACGTTCTTGCGCTATATGTTGTA              >  SRR4302532.239053/1‑94 (MQ=60)
                                                                               ATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCGATATATGTTGTA              >  SRR4302532.238834/1‑94 (MQ=60)
                                                                               ATTTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCGATATATGTTGTA              >  SRR4302532.1435618/1‑94 (MQ=60)
                                                                                 TTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCGATATATGTTGTAAC            <  SRR4302532.3601588/94‑1 (MQ=60)
                                                                                 TTCGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCGATATATGTTGTAAC            <  SRR4302532.1287345/94‑1 (MQ=60)
                                                                                  TCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCGATATATGTTGTAACT           <  SRR4302532.2986012/94‑1 (MQ=60)
                                                                                   CGCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCGATATATGTTGTAACTG          <  SRR4302532.5890968/94‑1 (MQ=60)
                                                                                    GCTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCGATATATGTTGTAACTGC         >  SRR4302532.37608/1‑94 (MQ=60)
                                                                                     CTTTCGTAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCGATATATGTTGTAACTGCA        <  SRR4302532.4319961/94‑1 (MQ=60)
                                                                                     CTTTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCGATATATGTTGTAACTGCA        <  SRR4302532.4968915/94‑1 (MQ=60)
                                                                                       TTCGCAGAAGCAGTTCTCGGAGACAAAAACGCCGCGTTCAGGATCCTTACCCAGTATGTATGATCGATCTGGCGATATATGcagtaactgacag      >  SRR4302532.3521191/1‑81 (MQ=53)
                                                                                       TTCGCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCGATATATGTTGTAACTGCAAG      <  SRR4302532.4407891/94‑1 (MQ=60)
                                                                                          GCAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCGATATATGTTGTAACTGCAAGGTA   <  SRR4302532.2783767/94‑1 (MQ=60)
                                                                                           CAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCGATATATGTTGTAACTGCAAGGTAC  <  SRR4302532.6168976/94‑1 (MQ=60)
                                                                                           CAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCGATATATGTTGTAACTGCAAGGTAC  >  SRR4302532.4766561/1‑94 (MQ=60)
                                                                                           CAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCGATATATGTTGTAACTGCAAGGTAC  >  SRR4302532.2136127/1‑94 (MQ=60)
                                                                                           CAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCGATATATGTTGTAACTGCAAGGTAC  >  SRR4302532.4192818/1‑94 (MQ=60)
                                                                                           CAGAAGAAGTTCGCGGAGACAAAAAGCGCGCTTTCAGCATCCTTAACCAGAATGTATGAACATTCTGGCGATATATGTTGTAACTGCAAGcaac  >  SRR4302532.4432622/1‑90 (MQ=60)
                                                                                           |                                                                                             
GCCGATCACTTTAACATCGACACGATCGCCTGCGCGATATAGCGGGCGATCGGTAAAAATATACAAGCGGGTGTTGTAGATTTCGCTTTCGTAGAAGAAGTTCTCGGAGACAAAAACGCCGCCTTCAGCATCCTTACCCAGAATGTATGAACGTTCTGGCGATATATGTTGTAACTGCAAGGTAC  >  NC_000913/2331325‑2331509

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑