Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	593	264.2	13311096	97.8%	13018251	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,341,770	G→A	G140G (GGC→GGT)	yfaL ←	putative ATP‑binding component of a transport system

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,341,770	0	G	A	87.3%	567.5 / 56.9	205	G140G (GGC→GGT)	yfaL	putative ATP‑binding component of a transport system
Reads supporting (aligned to +/- strand): ref base G (13/13); new base A (73/106); total (86/119)
Fisher's exact test for biased strand distribution p-value = 4.01e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.14e-01

Only 100 of 211 total aligned reads displayed.

GCCATCATTAGCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATGGCCCCGCCG  >  NC_000913/2341680‑2341857

 ccATCATTAGCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCAcca                                                                                      <  1:1080355/93‑1 (MQ=255)

  catcatTAGCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGcaccac                                                                                     >  1:3012549/1‑93 (MQ=255)

   atcatTAGCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACTATAAGAATAGATTGCaccacc                                                                                    >  1:39746/1‑93 (MQ=255)

   atcatTAGCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCaccacc                                                                                    >  1:4052849/1‑93 (MQ=255)

     catTAGCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCAt                                                                                  <  2:1418559/93‑1 (MQ=255)

      atTAGCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATa                                                                                 >  2:6464847/1‑93 (MQ=255)

       ttAGCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAg                                                                                >  2:5836645/1‑93 (MQ=255)

        tAGCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAgc                                                                               <  1:3745063/93‑1 (MQ=255)

        tAGCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAgc                                                                               >  1:4584269/1‑93 (MQ=255)

        tAGCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAgc                                                                               <  2:268712/93‑1 (MQ=255)

          gCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCGCCACCATAgccg                                                                             <  1:453207/93‑1 (MQ=255)

           cGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAgccgc                                                                            <  1:5708350/93‑1 (MQ=255)

            gATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAgccgcc                                                                           <  2:5922702/93‑1 (MQ=255)

             aTGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCt                                                                          <  2:3905876/93‑1 (MQ=255)

              tGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGCCTg                                                                         <  1:3949570/93‑1 (MQ=255)

              tGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTg                                                                         <  1:5993369/93‑1 (MQ=255)

                ttATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGCCTGCg                                                                       >  1:1468655/1‑93 (MQ=255)

                  aTTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGAc                                                                     <  2:3786138/93‑1 (MQ=255)

                  aTTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGAc                                                                     <  1:429257/93‑1 (MQ=255)

                   ttGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGCCTGCGACg                                                                    >  1:5303359/1‑93 (MQ=255)

                    tGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGt                                                                   <  2:2239063/93‑1 (MQ=255)

                     gCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGtt                                                                  <  2:5410408/93‑1 (MQ=255)

                     gCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGtt                                                                  <  1:5864692/93‑1 (MQ=255)

                     gCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGtt                                                                  <  2:5053132/93‑1 (MQ=255)

                        aaaCATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTAcc                                                               <  1:2240983/93‑1 (MQ=255)

                          aCATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCgg                                                             <  2:1361420/93‑1 (MQ=255)

                           cATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGCCTGCGACGTTACCGGa                                                            >  2:2843458/1‑93 (MQ=255)

                             tGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGaaa                                                          <  1:3403620/93‑1 (MQ=255)

                              ggCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGaaaa                                                         <  1:683135/93‑1 (MQ=255)

                              ggCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGaaaa                                                         <  2:2286242/93‑1 (MQ=255)

                               gCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGaaaaa                                                        <  1:2597182/93‑1 (MQ=255)

                                  ttAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGCCTGCGACGTTACCGGAAAAAATa                                                     >  1:3700000/1‑93 (MQ=255)

                                  ttAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATa                                                     <  1:847406/93‑1 (MQ=255)

                                    aGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAAc                                                   >  1:1862533/1‑93 (MQ=255)

                                     gTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACa                                                  >  1:2625596/1‑93 (MQ=255)

                                     gTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACa                                                  <  1:3245374/93‑1 (MQ=255)

                                       gACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATc                                                <  1:743984/93‑1 (MQ=255)

                                       gACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATc                                                <  1:5096164/93‑1 (MQ=255)

                                       gACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATc                                                <  2:4529762/93‑1 (MQ=255)

                                        acacGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCa                                               >  2:1469831/1‑93 (MQ=255)

                                        acacGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCa                                               <  2:519926/93‑1 (MQ=255)

                                         cacGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAg                                              >  2:607257/1‑93 (MQ=255)

                                          acGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGt                                             >  1:665337/1‑93 (MQ=255)

                                           cGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTa                                            <  1:2923111/93‑1 (MQ=255)

                                             tAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAg                                          >  1:462823/1‑93 (MQ=255)

                                             tAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAg                                          >  2:3686631/1‑93 (MQ=255)

                                             tAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAg                                          <  2:2933953/93‑1 (MQ=255)

                                             tAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAg                                          >  2:5576911/1‑93 (MQ=255)

                                              aaaTCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGa                                         <  2:16893/93‑1 (MQ=255)

                                              aaaTCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGa                                         <  2:1124017/93‑1 (MQ=255)

                                                aTCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGAtt                                       >  1:1139446/1‑93 (MQ=255)

                                                 tCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTc                                      <  1:4886914/93‑1 (MQ=255)

                                                 tCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACAGGAAAAAATAACATCAGTAAGATTc                                      >  2:6531567/1‑93 (MQ=255)

                                                  cGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCa                                     <  2:6589219/93‑1 (MQ=255)

                                                  cGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCa                                     <  2:4705911/93‑1 (MQ=255)

                                                   gACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAg                                    <  1:5556584/93‑1 (MQ=255)

                                                   gACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAg                                    >  2:2252875/1‑93 (MQ=255)

                                                    aCGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGc                                   >  2:4943117/1‑93 (MQ=255)

                                                    aCGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGc                                   <  1:3145446/93‑1 (MQ=255)

                                                    aCGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGc                                   <  1:2668562/93‑1 (MQ=255)

                                                       gCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGtt                                <  1:1148543/93‑1 (MQ=255)

                                                       gCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGtt                                <  1:6346116/93‑1 (MQ=255)

                                                         aCCAGTATTGTTAGTACCAGAAGAATAGATTGCGACACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGa                              <  1:1260186/93‑1 (MQ=255)

                                                         aCCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGa                              <  2:130515/93‑1 (MQ=255)

                                                         aCCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGa                              <  1:3469090/93‑1 (MQ=255)

                                                          ccAGTATCGTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAg                             >  1:3534982/1‑93 (MQ=255)

                                                           cAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGt                            <  2:4795871/93‑1 (MQ=255)

                                                           cAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGt                            >  2:447311/1‑93 (MQ=255)

                                                             gTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGttt                          >  1:2131360/1‑93 (MQ=255)

                                                             gTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGttt                          <  1:5537810/93‑1 (MQ=255)

                                                               aTCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTc                        <  2:5705474/93‑1 (MQ=255)

                                                               aTCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTc                        >  1:3975838/1‑93 (MQ=255)

                                                                tCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCt                       >  2:819475/1‑93 (MQ=255)

                                                                acGTTAGTCCCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCt                       <  2:1981000/92‑1 (MQ=255)

                                                                 cGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCtt                      >  1:5800170/1‑93 (MQ=255)

                                                                  gTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCttt                     <  1:3357503/93‑1 (MQ=255)

                                                                   ttgctACCAGAAGAATAGATTGCACCCCCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTa                    <  1:4773293/89‑1 (MQ=255)

                                                                   ttAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTa                    >  1:1644521/1‑93 (MQ=255)

                                                                   ttAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTa                    <  1:1944604/93‑1 (MQ=255)

                                                                   ttAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTa                    <  1:5236685/93‑1 (MQ=255)

                                                                      gTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCa                 >  2:3701434/1‑93 (MQ=255)

                                                                      gTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCa                 >  2:407791/1‑93 (MQ=255)

                                                                       tACCAGAAGAATAGATTGCGCCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCaa                <  2:2962701/93‑1 (MQ=255)

                                                                        aCCAGAAGAATAGATTGCGCCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCaaa               <  2:6652564/93‑1 (MQ=255)

                                                                        aCCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCaaa               <  1:719284/93‑1 (MQ=255)

                                                                          cAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAata             <  2:3527619/93‑1 (MQ=255)

                                                                          cAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAata             <  1:2011797/93‑1 (MQ=255)

                                                                          cAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAata             <  2:2578843/93‑1 (MQ=255)

                                                                           agaagaATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAatat            <  2:1566361/93‑1 (MQ=255)

                                                                           agaagaATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAatat            <  2:3406962/93‑1 (MQ=255)

                                                                            gaagaaTAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATg           >  1:229502/1‑93 (MQ=255)

                                                                             aagaaTAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATgg          <  2:5871476/93‑1 (MQ=255)

                                                                              agaaTAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATGGc         >  1:3818281/1‑93 (MQ=255)

                                                                                aaTAGATTGCGCCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATGGccc       <  1:6549785/93‑1 (MQ=255)

                                                                                aaTAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATGGccc       <  2:5338013/93‑1 (MQ=255)

                                                                                aaTAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATGGccc       <  2:1770274/93‑1 (MQ=255)

                                                                                 aTAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATGGcccc      <  1:248126/93‑1 (MQ=255)

                                                                                 aTAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATGGcccc      >  1:5525184/1‑93 (MQ=255)

                                                                                  tAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATGGCCccg     <  2:1209606/93‑1 (MQ=255)

                                                                                   aGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATGGCCccgc    >  2:2384160/1‑93 (MQ=255)

GCCATCATTAGCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATGGCCCCGCCG  >  NC_000913/2341680‑2341857

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTGCCATCATTAGCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATGGCCCCGCCGTTATT  >  NC_000913/2341678‑2341862

TTGCCATCATTAGCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCAC                                                                                             >  SRR4302547.6581687/1‑94 (MQ=60)

  GCCATCATTAGCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCA                                                                                           >  SRR4302547.743197/1‑94 (MQ=60)

   CCATCATTAGCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCAC                                                                                          <  SRR4302547.1101918/94‑1 (MQ=60)

   CCATCATTAGCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCAC                                                                                          >  SRR4302547.3072440/1‑94 (MQ=60)

   CCATCATTAGCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCAC                                                                                          >  SRR4302547.2206747/1‑94 (MQ=60)

    CATCATTAGCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACTATAAGAATAGATTGCACCACC                                                                                         >  SRR4302547.40481/1‑94 (MQ=60)

    CATCATTAGCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACC                                                                                         >  SRR4302547.4135158/1‑94 (MQ=60)

     ATCATTAGCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCA                                                                                        >  SRR4302547.5392755/1‑94 (MQ=60)

       CATTAGCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATA                                                                                      <  SRR4302547.5192427/94‑1 (MQ=60)

         TTAGCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGC                                                                                    >  SRR4302547.4679139/1‑94 (MQ=60)

          TAGCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCC                                                                                   <  SRR4302547.6000129/94‑1 (MQ=60)

          TAGCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCC                                                                                   <  SRR4302547.3821510/94‑1 (MQ=60)

           AGCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCG                                                                                  >  SRR4302547.3507666/1‑94 (MQ=60)

           AGCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATGGCACCACCATAGCCG                                                                                  <  SRR4302547.5944591/94‑1 (MQ=60)

            GCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGC                                                                                 <  SRR4302547.461610/94‑1 (MQ=60)

             CGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCC                                                                                <  SRR4302547.5826260/94‑1 (MQ=60)

             CGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCC                                                                                >  SRR4302547.3461541/1‑94 (MQ=60)

             CGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCC                                                                                >  SRR4302547.679992/1‑94 (MQ=60)

               ATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTG                                                                              >  SRR4302547.2270647/1‑94 (MQ=60)

                TGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGCCTGC                                                                             <  SRR4302547.4029909/94‑1 (MQ=60)

                TGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGC                                                                             <  SRR4302547.6117729/94‑1 (MQ=60)

                TGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGC                                                                             <  SRR4302547.2843186/94‑1 (MQ=60)

                 GTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGCCTGCG                                                                            >  SRR4302547.1498002/1‑94 (MQ=60)

                    ATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGCCTGCGACG                                                                         >  SRR4302547.5412753/1‑94 (MQ=60)

                    ATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACG                                                                         <  SRR4302547.437208/94‑1 (MQ=60)

                      TGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGCCTGCGACGTT                                                                       <  SRR4302547.4078752/94‑1 (MQ=60)

                      TGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACCTT                                                                       <  SRR4302547.2652065/94‑1 (MQ=60)

                       GCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTA                                                                      <  SRR4302547.5986068/94‑1 (MQ=60)

                        CGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTAC                                                                     >  SRR4302547.5555557/1‑94 (MQ=60)

                         GAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACC                                                                    <  SRR4302547.5085803/94‑1 (MQ=60)

                          AAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGCCTGCGACGTTACCG                                                                   <  SRR4302547.2381114/94‑1 (MQ=60)

                          AAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCG                                                                   <  SRR4302547.2286177/94‑1 (MQ=60)

                           AACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGG                                                                  <  SRR4302547.4030523/94‑1 (MQ=60)

                             CATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAA                                                                <  SRR4302547.4847281/94‑1 (MQ=60)

                               TGGCGTTAGTGACACGTAAATCGACGTCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAA                                                              <  SRR4302547.3183663/94‑1 (MQ=60)

                               TGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAA                                                              <  SRR4302547.3472877/94‑1 (MQ=60)

                                GGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAA                                                             <  SRR4302547.4936443/94‑1 (MQ=60)

                                GGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAA                                                             <  SRR4302547.695749/94‑1 (MQ=60)

                                 GCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAA                                                            <  SRR4302547.2649543/94‑1 (MQ=60)

                                   GTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGCCTGCGACGTTACCGGAAAAAATA                                                          >  SRR4302547.3775511/1‑94 (MQ=60)

                                    TTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAA                                                         >  SRR4302547.5781415/1‑94 (MQ=60)

                                    TTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAA                                                         <  SRR4302547.863584/94‑1 (MQ=60)

                                     TAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAAC                                                        <  SRR4302547.3052835/94‑1 (MQ=60)

                                     TAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAAC                                                        <  SRR4302547.3880226/94‑1 (MQ=60)

                                     TAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAAC                                                        >  SRR4302547.1899297/1‑94 (MQ=60)

                                      AGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACA                                                       >  SRR4302547.2678490/1‑94 (MQ=60)

                                       GTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACAT                                                      <  SRR4302547.3310205/94‑1 (MQ=60)

                                       GTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACAT                                                      <  SRR4302547.368476/94‑1 (MQ=60)

                                        TGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATC                                                     >  SRR4302547.71505/1‑94 (MQ=60)

                                         GACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCA                                                    <  SRR4302547.192169/94‑1 (MQ=60)

                                         GACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCA                                                    <  SRR4302547.5201250/94‑1 (MQ=60)

                                         GACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCA                                                    <  SRR4302547.757993/94‑1 (MQ=60)

                                         GACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCA                                                    >  SRR4302547.5223698/1‑94 (MQ=60)

                                           CACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGT                                                  >  SRR4302547.677594/1‑94 (MQ=60)

                                           CACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGT                                                  <  SRR4302547.4720582/94‑1 (MQ=60)

                                             CGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAA                                                >  SRR4302547.4050979/1‑94 (MQ=60)

                                             CGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAA                                                <  SRR4302547.2981390/94‑1 (MQ=60)

                                              GTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAG                                               >  SRR4302547.471367/1‑94 (MQ=60)

                                                 AATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATT                                            >  SRR4302547.1162458/1‑94 (MQ=60)

                                                   TCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCA                                          >  SRR4302547.2599533/1‑94 (MQ=60)

                                                   TCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCA                                          <  SRR4302547.4988146/94‑1 (MQ=60)

                                                    CGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAG                                         <  SRR4302547.3987126/94‑1 (MQ=60)

                                                    CGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAG                                         <  SRR4302547.2051083/94‑1 (MQ=60)

                                                     GACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGC                                        <  SRR4302547.5671205/94‑1 (MQ=60)

                                                      ACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCG                                       <  SRR4302547.2722178/94‑1 (MQ=60)

                                                      ACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCG                                       <  SRR4302547.3207944/94‑1 (MQ=60)

                                                         GCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTG                                    <  SRR4302547.6478307/94‑1 (MQ=60)

                                                         GCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTG                                    <  SRR4302547.1171769/94‑1 (MQ=60)

                                                         GCACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTG                                    <  SRR4302547.4674662/94‑1 (MQ=60)

                                                          CACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGA                                   >  SRR4302547.5656610/1‑94 (MQ=60)

                                                           ACCAGTATTGTTAGTACCAGAAGAATAGATTGCGACACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAG                                  <  SRR4302547.1285581/94‑1 (MQ=60)

                                                           ACCAGTATCGTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAG                                  >  SRR4302547.3607154/1‑94 (MQ=60)

                                                           ACCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAG                                  <  SRR4302547.3539829/94‑1 (MQ=60)

                                                            CCAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGT                                 <  SRR4302547.1183366/94‑1 (MQ=60)

                                                             CAGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTT                                >  SRR4302547.3591118/1‑94 (MQ=60)

                                                              AGTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTT                               >  SRR4302547.2173825/1‑94 (MQ=60)

                                                               GTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTT                              >  SRR4302547.429551/1‑94 (MQ=60)

                                                               GTATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTT                              <  SRR4302547.5652113/94‑1 (MQ=60)

                                                                TATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTC                             <  SRR4302547.6418706/94‑1 (MQ=60)

                                                                TATCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTC                             >  SRR4302547.4056682/1‑94 (MQ=60)

                                                                 ATCGTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCT                            <  SRR4302547.655159/94‑1 (MQ=60)

                                                                  TCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTT                           >  SRR4302547.5920162/1‑94 (MQ=60)

                                                                  TCGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTT                           >  SRR4302547.2695853/1‑94 (MQ=60)

                                                                   CGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTT                          <  SRR4302547.6099289/94‑1 (MQ=60)

                                                                   CGTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTT                          >  SRR4302547.2064324/1‑94 (MQ=60)

                                                                    GTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTA                         <  SRR4302547.3406536/94‑1 (MQ=60)

                                                                    GTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTA                         <  SRR4302547.3425611/94‑1 (MQ=60)

                                                                    GTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTA                         <  SRR4302547.6696533/94‑1 (MQ=60)

                                                                    GTTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTA                         >  SRR4302547.1677011/1‑94 (MQ=60)

                                                                     ttgcTACCAGAAGAATAGATTGCACCCCCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAG                        <  SRR4302547.4872189/90‑1 (MQ=60)

                                                                     TTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAG                        <  SRR4302547.5344484/94‑1 (MQ=60)

                                                                     TTAGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAG                        <  SRR4302547.1983156/94‑1 (MQ=60)

                                                                       AGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCA                      <  SRR4302547.5648571/94‑1 (MQ=60)

                                                                       AGTACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCA                      >  SRR4302547.3817496/1‑94 (MQ=60)

                                                                          ACCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAAT                   <  SRR4302547.732645/94‑1 (MQ=60)

                                                                           CCAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATA                  >  SRR4302547.4056037/1‑94 (MQ=60)

                                                                            CAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGATAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATAT                 >  SRR4302547.5866505/1‑94 (MQ=60)

                                                                            CAGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATAT                 <  SRR4302547.2051826/94‑1 (MQ=60)

                                                                             AGAAGAATAGATTGCGCCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATG                >  SRR4302547.114656/1‑94 (MQ=60)

                                                                             AGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATG                >  SRR4302547.802721/1‑94 (MQ=60)

                                                                             AGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATG                >  SRR4302547.233814/1‑94 (MQ=60)

                                                                             AGAAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATG                <  SRR4302547.1589303/94‑1 (MQ=60)

                                                                             AGAAGAATAGATAGCACAACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATG                <  SRR4302547.955538/94‑1 (MQ=60)

                                                                               AAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATGGC              >  SRR4302547.3896083/1‑94 (MQ=60)

                                                                               AAGAATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATGGC              >  SRR4302547.3271501/1‑94 (MQ=60)

                                                                                AGAATAGATTGCGCCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATGGCC             >  SRR4302547.4458594/1‑94 (MQ=60)

                                                                                  AATAGATTGCGCCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATGGCCCA           <  SRR4302547.6686088/94‑1 (MQ=60)

                                                                                  AATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATGGCCCC           >  SRR4302547.5639215/1‑94 (MQ=60)

                                                                                  AATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATGGCCCC           >  SRR4302547.2291357/1‑94 (MQ=60)

                                                                                  AATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATGGCCCC           <  SRR4302547.1309664/94‑1 (MQ=60)

                                                                                   ATAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATGGCCCCG          <  SRR4302547.252763/94‑1 (MQ=60)

                                                                                    TAGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATGGCCCCGC         <  SRR4302547.1819835/94‑1 (MQ=60)

                                                                                     AGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATGGCCCCGCC        <  SRR4302547.330492/94‑1 (MQ=60)

                                                                                     AGATTGCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATGGCCCCGCC        >  SRR4302547.1167844/1‑94 (MQ=60)

                                                                                         TGCACCACAATAGCCGCCTGCGACGTTACCGAAAAAAATAACATCAGAAAGATTCAGCGTTGATTTTTCTTTAGCAAATATGGCCCCGCCGTTA    <  SRR4302547.6128756/94‑1 (MQ=60)

                                                                                          GCACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATGGCCCCGCCGTTAT   >  SRR4302547.3216717/1‑94 (MQ=60)

                                                                                           CACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATGGCCCCGCCGTTATT  >  SRR4302547.3030429/1‑94 (MQ=60)

                                                                                           CACCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATGGCCCCGCCGTTATT  >  SRR4302547.6230601/1‑94 (MQ=60)

TTGCCATCATTAGCGATGTTATTGCGAAACATGGCGTTAGTGACACGTAAATCGACGGCACCAGTATCGTTAGTACCAGAAGAATAGATTGCGCCACCATAGCCGCCTGCGACGTTACCGGAAAAAATAACATCAGTAAGATTCAGCGTTGAGTTTTCTTTAGCAAATATGGCCCCGCCGTTATT  >  NC_000913/2341678‑2341862

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`