Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,342,081 |
A→G |
Y37H (TAT→CAT) |
yfaL ← |
putative ATP‑binding component of a transport system |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,342,081 | 0 | A | G | 90.2%
| 592.6
/ 45.6
| 204 | Y37H (TAT→CAT) | yfaL | putative ATP‑binding component of a transport system |
| Reads supporting (aligned to +/- strand): ref base A (10/10); new base G (74/110); total (84/120) |
| Fisher's exact test for biased strand distribution p-value = 4.75e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.69e-01 |
Only 100 of 208 total aligned reads displayed.
AAACCAGCCATTGCCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATATCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGC > NC_000913/2341991‑2342170
|
aaaCCAGCCATTGCCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTc > 1:3194318/1‑93 (MQ=255)
aaaCCAGCCATTGCCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATATc > 1:4197172/1‑93 (MQ=255)
aCCAGCCATTGCCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTccc < 2:2722843/93‑1 (MQ=255)
aCCAGCCATTGCCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTccc > 1:998609/1‑93 (MQ=255)
aCCAGCCATTGCCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATATccc < 1:122379/93‑1 (MQ=255)
ccAGCCATTGCCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCt > 1:3231472/1‑93 (MQ=255)
ccAGCCATTGCCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCt < 1:1934657/93‑1 (MQ=255)
cAGCCATTGCCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATATCCCTg > 2:6402724/1‑93 (MQ=255)
ttGCCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGa < 1:4498283/93‑1 (MQ=255)
cccATCAGCGATACTCCAGTCCTGCGTAATGCATGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATc > 1:6319558/1‑93 (MQ=255)
cgaTCAGCGATGCGCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCa < 2:5800170/91‑1 (MQ=255)
ccATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCa > 2:4889843/1‑93 (MQ=255)
cATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAg > 2:4900273/1‑93 (MQ=255)
cATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAg < 1:2931026/93‑1 (MQ=255)
aTCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGt < 1:1832941/93‑1 (MQ=255)
aTCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGt < 1:3341992/93‑1 (MQ=255)
aTCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATATCCCTGGCATGAATCAGt < 1:3497097/93‑1 (MQ=255)
tCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTg > 2:318885/1‑93 (MQ=255)
tCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATATCCCTGGCATGAATCAGTg > 1:454335/1‑93 (MQ=255)
cAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGa > 2:143887/1‑93 (MQ=255)
cAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGa < 2:2246041/93‑1 (MQ=255)
gCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATATCCCTGGCATGAATCAGTGAcc < 1:1474378/93‑1 (MQ=255)
gCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATATCCCTGGCATGAATCAGTGAcc > 2:3935473/1‑93 (MQ=255)
gATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGAccgc > 1:6238697/1‑93 (MQ=255)
aTACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGAccgcc > 1:5489598/1‑93 (MQ=255)
aTACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATATCCCTGGCATGAATCAGTGAccgcc > 1:1169337/1‑93 (MQ=255)
tACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGAccgccg < 2:6002012/93‑1 (MQ=255)
cTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCcgcg > 2:557439/1‑93 (MQ=255)
cTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCcgcg > 1:1600323/1‑93 (MQ=255)
tCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGa < 2:2024017/93‑1 (MQ=255)
tCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGa < 1:2255724/93‑1 (MQ=255)
tCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGa < 2:3518814/93‑1 (MQ=255)
ccAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACCACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGac > 1:3167816/1‑93 (MQ=255)
cAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGaca > 1:3671808/1‑93 (MQ=255)
cAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGaca > 2:1831312/1‑93 (MQ=255)
aGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGacac < 1:4817642/93‑1 (MQ=255)
aGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGacac < 2:4081377/93‑1 (MQ=255)
gTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCAAGTCCCTGGCATGAATCAGTGACCGCCGCGACAcc < 2:2642197/93‑1 (MQ=255)
tCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCg > 1:2824355/1‑93 (MQ=255)
ccTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGt < 2:3642352/93‑1 (MQ=255)
ccTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGt < 1:1554866/93‑1 (MQ=255)
ccTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATATCCCTGGCATGAATCAGTGACCGCCGCGACACCGt > 1:1656144/1‑93 (MQ=255)
cTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCggt > 2:6317709/1‑91 (MQ=255)
cTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGtt > 1:6221688/1‑93 (MQ=255)
cTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGtt < 2:5702268/93‑1 (MQ=255)
tGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTa < 1:5899422/93‑1 (MQ=255)
tGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTa < 1:3526561/93‑1 (MQ=255)
tGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTa < 1:1415096/93‑1 (MQ=255)
gTAATGCCTGAAAGGCTTTGCCTGCTGGCCTTACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCa < 1:6477398/93‑1 (MQ=255)
gTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCa > 1:5601569/1‑93 (MQ=255)
gTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCa < 2:2971288/93‑1 (MQ=255)
aaTGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCaga < 2:239361/93‑1 (MQ=255)
aaTGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTCACCGCCGCGACACCGTTCGCagg > 2:1302621/1‑92 (MQ=255)
aTGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCagag < 1:1393223/93‑1 (MQ=255)
aTGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCagag > 2:1122567/1‑93 (MQ=255)
tGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAgaga > 1:1698167/1‑93 (MQ=255)
gCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCTGCGACACCGTTAGCAGAGaa < 1:3774877/93‑1 (MQ=255)
ccTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGaaa > 2:1505016/1‑93 (MQ=255)
tGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAag > 1:2985215/1‑93 (MQ=255)
tGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAag < 1:1484595/93‑1 (MQ=255)
tGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATATCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAag > 2:1237783/1‑93 (MQ=255)
gAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATATCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAaga < 1:874681/93‑1 (MQ=255)
aaGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAgaga < 2:3047269/93‑1 (MQ=255)
tttGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCaa < 1:2849079/93‑1 (MQ=255)
tttGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCaa < 2:6057445/93‑1 (MQ=255)
ccTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCAt < 2:1089288/93‑1 (MQ=255)
ctgctgGCCTGACACCTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCAtt < 1:5012215/93‑1 (MQ=255)
gctgGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGa > 1:816301/1‑93 (MQ=255)
gctgGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGa < 2:4688634/93‑1 (MQ=255)
gctgGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGa < 1:5576911/93‑1 (MQ=255)
ctgGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGAc < 1:2646157/93‑1 (MQ=255)
ggCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACgg < 1:5546172/93‑1 (MQ=255)
ggCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACgg < 1:5824332/93‑1 (MQ=255)
gcgtGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACggg < 2:1054575/90‑1 (MQ=255)
ccTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGa < 2:1271856/93‑1 (MQ=255)
ccTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGa < 2:4648118/93‑1 (MQ=255)
tGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGt < 1:3023657/93‑1 (MQ=255)
gACAACTCGCTTTGACATCATATCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTa < 2:1625244/93‑1 (MQ=255)
cAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTaaa > 1:5229472/1‑93 (MQ=255)
aCTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGa > 2:1211579/1‑93 (MQ=255)
aCTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGa > 2:6144011/1‑93 (MQ=255)
tCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATa > 1:4241082/1‑93 (MQ=255)
gCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATaaa < 2:2282525/93‑1 (MQ=255)
gCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATaaa > 2:5366946/1‑93 (MQ=255)
gCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATaaa < 2:4271834/93‑1 (MQ=255)
tttGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATa > 1:4052256/1‑93 (MQ=255)
ttGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATAc < 2:5296079/93‑1 (MQ=255)
ttGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATAc > 2:5919697/1‑93 (MQ=255)
ttGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATAc < 2:595708/93‑1 (MQ=255)
gACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTc < 2:3507083/93‑1 (MQ=255)
aCATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTcc < 1:3704608/93‑1 (MQ=255)
aCATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTcc > 1:6591352/1‑93 (MQ=255)
catcatGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCt < 2:2827676/93‑1 (MQ=255)
catcatGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCt < 1:3942521/93‑1 (MQ=255)
catcatGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCt > 1:5281620/1‑93 (MQ=255)
tcatGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTg < 2:395921/93‑1 (MQ=255)
tcatGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTg < 1:544052/93‑1 (MQ=255)
tcatGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGCAAAGATAAATACTCCTTg > 1:4339340/1‑93 (MQ=255)
catGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGc > 2:3378838/1‑93 (MQ=255)
catGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGc < 2:3311154/93‑1 (MQ=255)
|
AAACCAGCCATTGCCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATATCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGC > NC_000913/2341991‑2342170
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AAAAAACCAGCCATTGCCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATATCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAG > NC_000913/2341988‑2342174
|
AAAAAACCAGCCATTGCCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATA < SRR4302547.4319222/94‑1 (MQ=60)
AAAACCAGCCATTGCCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTC > SRR4302547.3257968/1‑94 (MQ=60)
AAAACCAGCCATTGCCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATATC > SRR4302547.4282766/1‑94 (MQ=60)
AACCAGCCATTGCCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCC > SRR4302547.1018075/1‑94 (MQ=60)
ACCAGCCATTGCCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCT > SRR4302547.3295967/1‑94 (MQ=60)
ACCAGCCATTGCCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATATCCCT < SRR4302547.124604/94‑1 (MQ=60)
CCAGCCATTGCCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTG > SRR4302547.1705827/1‑94 (MQ=60)
CCAGCCATTGCCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTG < SRR4302547.1973026/94‑1 (MQ=60)
AGCCATTGCCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACCTAATGTCCCTGGC > SRR4302547.4302168/1‑94 (MQ=60)
GCCATTGCCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCA < SRR4302547.5983382/94‑1 (MQ=60)
CCATTGCCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCAT < SRR4302547.53542/94‑1 (MQ=60)
CCATTGCCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCAT > SRR4302547.3241076/1‑94 (MQ=60)
CATTGCCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATG < SRR4302547.1683370/94‑1 (MQ=60)
ATTGCCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGA < SRR4302547.331931/94‑1 (MQ=60)
TTGCCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAA < SRR4302547.4591197/94‑1 (MQ=60)
TGCCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAAT < SRR4302547.456777/94‑1 (MQ=60)
GCCCATCAGCGATACTCCAGTCCTGCGTAATGCATGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATC > SRR4302547.6450965/1‑94 (MQ=60)
CCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCA > SRR4302547.4173077/1‑94 (MQ=60)
CCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATATCCCTGGCATGAATCA > SRR4302547.681884/1‑94 (MQ=60)
CATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGT < SRR4302547.2989445/94‑1 (MQ=60)
ATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTG < SRR4302547.6700705/94‑1 (MQ=60)
ATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTG < SRR4302547.3409627/94‑1 (MQ=60)
ATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTG < SRR4302547.1869177/94‑1 (MQ=60)
ATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTG > SRR4302547.1914083/1‑94 (MQ=60)
ATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATATCCCTGGCATGAATCAGTG < SRR4302547.3568466/94‑1 (MQ=60)
ATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATATCCCTGGCATGAATCAGTG > SRR4302547.462752/1‑94 (MQ=60)
CAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGAC > SRR4302547.1534598/1‑94 (MQ=60)
GCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATATCCCTGGCATGAATCAGTGACCG < SRR4302547.1503830/94‑1 (MQ=60)
CGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGC > SRR4302547.6368306/1‑94 (MQ=60)
CGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGC < SRR4302547.1513510/94‑1 (MQ=60)
GATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCC > SRR4302547.5602961/1‑94 (MQ=60)
GATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATATCCCTGGCATGAATCAGTGACCGCC > SRR4302547.1192979/1‑94 (MQ=60)
TACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGC < SRR4302547.3845441/94‑1 (MQ=60)
TACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGC > SRR4302547.2826500/1‑94 (MQ=60)
ACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCG > SRR4302547.3118817/1‑94 (MQ=60)
ACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCG < SRR4302547.3034037/94‑1 (MQ=60)
ACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCG > SRR4302547.1632068/1‑94 (MQ=60)
TCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACCACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGAC > SRR4302547.3230847/1‑94 (MQ=60)
TCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGAC < SRR4302547.3776988/94‑1 (MQ=60)
TCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGAC < SRR4302547.6361718/94‑1 (MQ=60)
TCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGAC < SRR4302547.2301278/94‑1 (MQ=60)
CCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACA > SRR4302547.3746692/1‑94 (MQ=60)
AGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACC < SRR4302547.4917483/94‑1 (MQ=60)
AGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACC < SRR4302547.6130834/94‑1 (MQ=60)
GTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCG > SRR4302547.2880846/1‑94 (MQ=60)
GTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCG < SRR4302547.3066674/94‑1 (MQ=60)
TCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATATCCCTGGCATGAATCAGTGACCGCCGCGACACCGT > SRR4302547.1688812/1‑94 (MQ=60)
CCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTT > SRR4302547.6350895/1‑94 (MQ=60)
CCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTT < SRR4302547.1585801/94‑1 (MQ=60)
CCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATATCCCTGGCATGAATCAGTGACCGCCGCGACACCGTT < SRR4302547.6421913/94‑1 (MQ=60)
CTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTA < SRR4302547.2282799/94‑1 (MQ=60)
TGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAG < SRR4302547.3598565/94‑1 (MQ=60)
TGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAG < SRR4302547.4029020/94‑1 (MQ=60)
TGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAG < SRR4302547.1443393/94‑1 (MQ=60)
TGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAG < SRR4302547.6021585/94‑1 (MQ=60)
TGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAG < SRR4302547.5619319/94‑1 (MQ=60)
CGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCA > SRR4302547.5717132/1‑94 (MQ=60)
GTAATGCCTGAAAGGCTTTGCCTGCTGGCCTTACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAG < SRR4302547.6612269/94‑1 (MQ=60)
TAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGA > SRR4302547.1286858/1‑94 (MQ=60)
ATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGA > SRR4302547.1731554/1‑94 (MQ=60)
ATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGA < SRR4302547.1421102/94‑1 (MQ=60)
GCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCTGCGACACCGTTAGCAGAGAAA < SRR4302547.3851862/94‑1 (MQ=60)
GCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAA > SRR4302547.2978829/1‑94 (MQ=60)
CCTGAAAGGCTTTGTCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAA > SRR4302547.3258297/1‑94 (MQ=60)
CCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAA < SRR4302547.4395607/94‑1 (MQ=60)
CCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAA > SRR4302547.3580779/1‑94 (MQ=60)
CTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAG > SRR4302547.5171459/1‑94 (MQ=60)
CTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAG > SRR4302547.3044622/1‑94 (MQ=60)
TGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGA < SRR4302547.1514214/94‑1 (MQ=60)
GAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAG < SRR4302547.2523925/94‑1 (MQ=60)
GAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATATCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAG < SRR4302547.891470/94‑1 (MQ=60)
GAAAGGCTTTGCCTGCTGGCATGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAG < SRR4302547.4814891/94‑1 (MQ=60)
AGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATG > SRR4302547.5432080/1‑94 (MQ=60)
GGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGC < SRR4302547.835090/94‑1 (MQ=60)
TTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAAT < SRR4302547.2906000/94‑1 (MQ=60)
CCTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATT > SRR4302547.2344523/1‑94 (MQ=60)
CTGCTGGCCTGACACCTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTG < SRR4302547.5115829/94‑1 (MQ=60)
CTGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTG < SRR4302547.5734452/94‑1 (MQ=60)
TGCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGA > SRR4302547.831804/1‑94 (MQ=60)
GCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGAC < SRR4302547.5691899/94‑1 (MQ=60)
GCTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGAC < SRR4302547.3932654/94‑1 (MQ=60)
CTGGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACG < SRR4302547.2699396/94‑1 (MQ=60)
GGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGG < SRR4302547.5944862/94‑1 (MQ=60)
GGCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGG < SRR4302547.5660610/94‑1 (MQ=60)
GCCTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGA > SRR4302547.3678222/1‑94 (MQ=60)
CCTGACAACTCGCTTTGAAATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAG > SRR4302547.1772855/1‑94 (MQ=60)
CTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGT < SRR4302547.4991120/94‑1 (MQ=60)
CTGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGT > SRR4302547.5680161/1‑94 (MQ=60)
TGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTA > SRR4302547.1456057/1‑94 (MQ=60)
TGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTA < SRR4302547.984647/94‑1 (MQ=60)
TGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTA < SRR4302547.3083782/94‑1 (MQ=60)
TGACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTA < SRR4302547.3423883/94‑1 (MQ=60)
ACAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAA > SRR4302547.5337118/1‑94 (MQ=60)
CAACTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAG < SRR4302547.1195691/94‑1 (MQ=60)
AACTCGCTTTGACATCATATCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGA < SRR4302547.652674/94‑1 (MQ=60)
CTCGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATA > SRR4302547.4327803/1‑94 (MQ=60)
CGCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAA < SRR4302547.3664279/94‑1 (MQ=60)
GCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAAT < SRR4302547.567839/94‑1 (MQ=60)
GCTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAAT < SRR4302547.6620705/94‑1 (MQ=60)
CTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATA > SRR4302547.5580678/1‑94 (MQ=60)
CTTTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATA > SRR4302547.4134552/1‑94 (MQ=60)
TTGACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACT < SRR4302547.142247/94‑1 (MQ=60)
GACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCC > SRR4302547.6728569/1‑94 (MQ=60)
ACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCT < SRR4302547.3780226/94‑1 (MQ=60)
ACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCT > SRR4302547.5390563/1‑94 (MQ=60)
ACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCT > SRR4302547.5390562/1‑94 (MQ=60)
ACATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCT < SRR4302547.4609255/94‑1 (MQ=60)
CATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTT < SRR4302547.4022694/94‑1 (MQ=60)
ATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTG < SRR4302547.28928/94‑1 (MQ=60)
ATCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGCAAAGATAAATACTCCTTG > SRR4302547.4428584/1‑94 (MQ=60)
TCATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGC < SRR4302547.553873/94‑1 (MQ=60)
CATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCG < SRR4302547.1611298/94‑1 (MQ=60)
CATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCG > SRR4302547.1151809/1‑94 (MQ=60)
ATGTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGT > SRR4302547.6309619/1‑94 (MQ=60)
GTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAG < SRR4302547.6229727/94‑1 (MQ=60)
GTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAG < SRR4302547.3101375/94‑1 (MQ=60)
GTCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAG < SRR4302547.1309148/94‑1 (MQ=60)
|
AAAAAACCAGCCATTGCCCATCAGCGATACTCCAGTCCTGCGTAATGCCTGAAAGGCTTTGCCTGCTGGCCTGACAACTCGCTTTGACATCATATCCCTGGCATGAATCAGTGACCGCCGCGACACCGTTAGCAGAGAAAAGAGATGCAATCATTGACGGGAGTAAAGATAAATACTCCTTGCGTAG > NC_000913/2341988‑2342174
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
