Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,352,506 |
T→C |
H74H (CAT→CAC) |
glpB → |
sn‑glycerol‑3‑phosphate dehydrogenase (anaerobic), membrane anchor subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,352,506 | 0 | T | C | 86.8%
| 546.5
/ 63.3
| 204 | H74H (CAT→CAC) | glpB | sn‑glycerol‑3‑phosphate dehydrogenase (anaerobic), membrane anchor subunit |
| Reads supporting (aligned to +/- strand): ref base T (14/13); new base C (107/70); total (121/83) |
| Fisher's exact test for biased strand distribution p-value = 4.08e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.42e-01 |
Only 100 of 232 total aligned reads displayed.
GCTGGATTTGCTGAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCATCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTGCGCAATTGCAGGG > NC_000913/2352416‑2352595
|
cTGGATTTGCTGAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCt < 2:1970131/93‑1 (MQ=255)
cTGGATTTGCTGAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCt < 2:2393597/93‑1 (MQ=255)
cTGGATTTGCTGAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCACACCCt > 1:3011798/1‑93 (MQ=255)
ggATTTGCTGAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTa > 2:2096673/1‑93 (MQ=255)
ggATTTGCTGAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTa > 2:2471244/1‑93 (MQ=255)
gATTTGCTGAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTAc > 2:3734268/1‑93 (MQ=255)
tttGCTGAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTc > 2:5016555/1‑93 (MQ=255)
ttGCTGAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTcc > 2:4198241/1‑93 (MQ=255)
gCTGAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCt < 1:1025880/93‑1 (MQ=255)
cTGAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCtt < 2:2651521/93‑1 (MQ=255)
tGAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCATCCTTACTCCCTtc < 1:5191568/93‑1 (MQ=255)
tGAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTtc < 1:4930665/93‑1 (MQ=255)
tGAGCCATCGGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTtc < 2:2307483/93‑1 (MQ=255)
gAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTtct > 1:3682035/1‑93 (MQ=255)
gAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTtct < 2:5047456/93‑1 (MQ=255)
aGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTtctc > 2:3088872/1‑93 (MQ=255)
ccATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGa < 2:2855746/93‑1 (MQ=255)
cATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCATCCTTACTCCCTTCTCGAg > 1:2418597/1‑93 (MQ=255)
aTCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGc > 1:2336859/1‑93 (MQ=255)
aTCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGc < 2:1761478/93‑1 (MQ=255)
tCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGcc > 2:3448226/1‑93 (MQ=255)
tCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGcc > 1:3076982/1‑93 (MQ=255)
cTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCca < 2:5421042/93‑1 (MQ=255)
gCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCGCATCCTTACTCCCTTCTCGAGCcaca > 1:5357385/1‑93 (MQ=255)
ccAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCATCCTTACTCCCTTCTCGAGCCACaa < 1:5320703/93‑1 (MQ=255)
ccAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCATCCTTACTCCCTTCTCGAGCCACaa < 2:870180/93‑1 (MQ=255)
cAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAAc > 2:4933510/1‑93 (MQ=255)
cAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAAc > 2:3192220/1‑93 (MQ=255)
cAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAAc > 1:4269247/1‑93 (MQ=255)
cAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAAc < 1:3152289/93‑1 (MQ=255)
cAGATGGTAAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCATGCACCAGCCCACCCTTACTCCCTTCTCGAGAcacacc > 1:6252442/1‑91 (MQ=255)
gATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAAcgc < 2:62880/93‑1 (MQ=255)
aTGGTCAACCGGGGACCGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAAcgct > 1:335273/1‑92 (MQ=255)
tGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGt > 2:4833065/1‑93 (MQ=255)
cgaCCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTc > 1:2525431/3‑93 (MQ=255)
cAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTc > 2:1060426/1‑93 (MQ=255)
cAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTc > 2:6532936/1‑93 (MQ=255)
aaCCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCTAGCCACAACGCGTGCTCg > 2:5633587/1‑93 (MQ=255)
aaCCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCg > 1:164247/1‑93 (MQ=255)
aCCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCCCCAGCCCACCCTTCCTCCCTTCTCGAGCCACAACGCGTGCTCGa < 1:1163877/93‑1 (MQ=255)
ccGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGAt > 2:4689790/1‑93 (MQ=255)
cGGTGACAGACATTCGCAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGAtc < 2:1410558/93‑1 (MQ=255)
ggTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACCCCCTTCTCGAGCCACAACGCGTGCTCGAtct < 2:3662940/93‑1 (MQ=255)
ggTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGCCCCCAGCCCATCCTTCCCCCCTTCTCGAGCCACAACGCGTGCTCGAtct < 1:3903870/93‑1 (MQ=255)
ggTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGCCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGAtct < 2:2913633/93‑1 (MQ=255)
gacagacaTTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGc < 2:5582190/93‑1 (MQ=255)
acagacaTTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCt < 1:2306207/93‑1 (MQ=255)
acagacaTTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCt < 2:1167682/93‑1 (MQ=255)
agacaTTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCATCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTg > 1:4290229/1‑93 (MQ=255)
gacaTTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCATCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGc > 2:2925777/1‑93 (MQ=255)
gacaTTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGc > 1:2601230/1‑93 (MQ=255)
caTTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACACCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCa < 1:5402292/93‑1 (MQ=255)
aTTCACAGTGGACTGGAATCTTTGCGTCACCAGGCTCCCGCCCACCCTTACCCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAg < 2:5652860/93‑1 (MQ=255)
tCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGgc < 2:6226610/93‑1 (MQ=255)
tCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGgc < 2:1354953/93‑1 (MQ=255)
acaGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGgcgc > 1:917336/1‑93 (MQ=255)
caGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCa > 1:5127636/1‑93 (MQ=255)
caGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCa < 1:6581202/93‑1 (MQ=255)
aagaggACTGGAATGTTTGGGTCAGCAGGCACCGGCCCGCCCTTCCGCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCa < 1:4474931/89‑1 (MQ=255)
aGTGGTCTGTAACATTTGCGTAGGCAGGCCCCAGCCACCCCTTGCTCCCTTCCCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAg < 1:6423326/93‑1 (MQ=255)
aGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCATCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAg < 2:5793152/93‑1 (MQ=255)
aGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAg < 1:1801959/93‑1 (MQ=255)
gggAGTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGc < 2:405448/92‑1 (MQ=255)
gACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTCCTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCAt < 2:4304293/93‑1 (MQ=255)
gACGGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTCCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCAt < 1:4562642/93‑1 (MQ=255)
cTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGTCAGGCGCAGGCATTa > 2:4140550/1‑93 (MQ=255)
cTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTa > 1:69256/1‑93 (MQ=255)
ggAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAAt > 2:1017698/1‑93 (MQ=255)
aaTCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATcc > 2:5231922/1‑92 (MQ=255)
aaTCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCg > 1:6503988/1‑93 (MQ=255)
aaTCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCGCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCg < 2:6029404/93‑1 (MQ=255)
tCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCt > 2:2735010/1‑93 (MQ=255)
tCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCt > 2:3130421/1‑93 (MQ=255)
tCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGAGCTCGCTTGCCAGGCGCAGGCATTAATCGCt > 1:4776480/1‑93 (MQ=255)
tttGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCGGGCATTAATCGCTGa > 2:6335505/1‑93 (MQ=255)
ttGCGTCGGCAGCCCCCAGCCCACCCTTCCCCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGaa < 1:3794024/93‑1 (MQ=255)
ttGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGaa > 2:261768/1‑93 (MQ=255)
tGCGTCAGCAGGCACCAGCCCATCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGaaa < 1:5561422/93‑1 (MQ=255)
tGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGaaa > 1:4720864/1‑93 (MQ=255)
tGCGTCAGCAGGCACCAGACCATCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTTGCTTGCCAGGCGCAGGCATTAATCGCTGaaa > 2:515763/1‑93 (MQ=255)
gcgcCAGCAGCCCCCGCCCCGCCCTTACCCCCTTCGCGAGCCACAACGCGTGCTCGAGCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAg < 1:944334/93‑1 (MQ=255)
gCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAg > 2:3959688/1‑93 (MQ=255)
gCGTCAGCAGGCACCACCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAg < 1:5993532/93‑1 (MQ=255)
cagcagGCACCAGCCCATCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGt > 1:853665/1‑93 (MQ=255)
cagcagGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGt > 1:1239024/1‑93 (MQ=255)
agcagGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTg < 2:3823877/93‑1 (MQ=255)
agcagGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTg > 1:5674050/1‑93 (MQ=255)
gcagGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTgc > 2:6100985/1‑93 (MQ=255)
gcagGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTgc > 2:1462673/1‑93 (MQ=255)
agGCACCAGCCCATCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTgcgc > 2:6620100/1‑93 (MQ=255)
agGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTgcgc > 2:19038/1‑93 (MQ=255)
ggCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTGCGCa > 1:2145027/1‑93 (MQ=255)
gCACCAGCCCCCCCTTACCCCCTTCCCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTGCGCaa < 1:5029648/93‑1 (MQ=255)
cACCAGCCCCCCCTTCCTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCAAGGCGCAGGCATTAATCGCTGAAAGCGGTGCGCAAt < 1:1113094/93‑1 (MQ=255)
aCCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTGCGCAAtt > 2:4776925/1‑93 (MQ=255)
aCCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTGCGCAAtt > 2:4499220/1‑93 (MQ=255)
cAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTGCGCAATTGc > 1:1498858/1‑93 (MQ=255)
aGCCTACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGCAAGCGGCGCGCAATTGcc > 1:3963048/1‑92 (MQ=255)
gCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTGCGCAATTGCAg > 1:560594/1‑93 (MQ=255)
ccccACCCTTGCTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTGCGCAATTGCAg < 1:4006615/92‑1 (MQ=255)
|
GCTGGATTTGCTGAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCATCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTGCGCAATTGCAGGG > NC_000913/2352416‑2352595
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ATCGCTGGATTTGCTGAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCATCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTGCGCAATTGCAGGGCAG > NC_000913/2352413‑2352598
|
ATCGCTGGATTTGCTGAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCAC > SRR4302547.3570915/1‑94 (MQ=60)
ATCGCTGGATTTGCTGAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCAC < SRR4302547.6689702/94‑1 (MQ=60)
TCGCTGGATTTGCTGAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACC > SRR4302547.4086766/1‑94 (MQ=60)
CGCTGGATTTGCTGAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCC > SRR4302547.4614177/1‑94 (MQ=60)
GCTGGATTTGCTGAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCACACCCT > SRR4302547.3071679/1‑94 (MQ=60)
CTGGATTTGCTGAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTT > SRR4302547.2452610/1‑94 (MQ=60)
CTGGATTTGCTGAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTT > SRR4302547.374267/1‑94 (MQ=60)
GCTGAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTT < SRR4302547.1046021/94‑1 (MQ=60)
GCTGAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTT < SRR4302547.3924202/94‑1 (MQ=60)
CTGAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTC > SRR4302547.5451104/1‑94 (MQ=60)
TGAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCATCCTTACTCCCTTCT < SRR4302547.5298412/94‑1 (MQ=60)
TGAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCT < SRR4302547.5032798/94‑1 (MQ=60)
TGAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCT > SRR4302547.3757202/1‑94 (MQ=60)
GAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTC > SRR4302547.2809379/1‑94 (MQ=60)
CCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCATCCTTACTCCCTTCTCGAG > SRR4302547.2467565/1‑94 (MQ=60)
CATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGC > SRR4302547.2384228/1‑94 (MQ=60)
ATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCC > SRR4302547.1531396/1‑94 (MQ=60)
ATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCC > SRR4302547.3138100/1‑94 (MQ=60)
CTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGACAC > SRR4302547.4833075/1‑94 (MQ=60)
TGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCGCATCCTTACTCCCTTCTCGAGCCACA > SRR4302547.5467892/1‑94 (MQ=60)
TGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACA > SRR4302547.6656082/1‑94 (MQ=60)
GCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAA < SRR4302547.5146829/94‑1 (MQ=60)
CCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCATCCTTACTCCCTTCTCGAGCCACAAA < SRR4302547.5430399/94‑1 (MQ=60)
CCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAAC > SRR4302547.4356843/1‑94 (MQ=60)
CCAGATGGTAAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCATGCACCAGCCCACCCTTACTCCCTTCTCGAGACACACC > SRR4302547.6382330/1‑94 (MQ=60)
CAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACG < SRR4302547.3214952/94‑1 (MQ=60)
CAGATGGTCAACCGGTGACAGACATCCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCCCGAGCCACAACG < SRR4302547.4462351/94‑1 (MQ=60)
TGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCATCCTTACTCCCTTCTCGAGCCACAACGC > SRR4302547.3348065/1‑94 (MQ=60)
AGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGC < SRR4302547.1503268/94‑1 (MQ=60)
AGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGC > SRR4302547.1102680/1‑94 (MQ=60)
GATGGTCAACCGGGGACCGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCT > SRR4302547.341510/1‑94 (MQ=60)
ATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGT > SRR4302547.5659301/1‑94 (MQ=60)
ATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGT > SRR4302547.5565534/1‑94 (MQ=60)
ATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGT > SRR4302547.1018801/1‑94 (MQ=60)
TCGACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTC > SRR4302547.2576461/1‑94 (MQ=60)
TCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTC < SRR4302547.928519/94‑1 (MQ=60)
CAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCG > SRR4302547.167263/1‑94 (MQ=60)
CAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCG < SRR4302547.5314351/94‑1 (MQ=60)
ACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCCCCAGCCCACCCTTCCTCCCTTCTCGAGCCACAACGCGTGCTCGAT < SRR4302547.1187422/94‑1 (MQ=60)
CCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATC < SRR4302547.6389264/94‑1 (MQ=60)
CGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCCCCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCT < SRR4302547.1243945/94‑1 (MQ=60)
CGGGGACAGACATTCACAGTGGCCTGGAATTTTTGCGTCAGCAGGCACCAGCCCACCTTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCT < SRR4302547.2296206/94‑1 (MQ=60)
GGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGCCCCCAGCCCATCCTTCCCCCCTTCTCGAGCCACAACGCGTGCTCGATCTC < SRR4302547.3983261/94‑1 (MQ=60)
GGTGACAGACATTCACAGTGGACTGAAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTC < SRR4302547.4899844/94‑1 (MQ=60)
GTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCATCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCG < SRR4302547.5696349/94‑1 (MQ=60)
GACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCATCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCT > SRR4302547.2619722/1‑94 (MQ=60)
ACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTT < SRR4302547.2352954/94‑1 (MQ=60)
CAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCATCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTG > SRR4302547.4378406/1‑94 (MQ=60)
CAGACATTCACAGTGGACTGGAATCTTTGCGCCAGCAGACGCCGGCCCACCCTTCCCCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTG < SRR4302547.851297/94‑1 (MQ=60)
AGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGC > SRR4302547.2653659/1‑94 (MQ=60)
AGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGC > SRR4302547.4011923/1‑94 (MQ=60)
GACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTCCTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCC < SRR4302547.2387069/94‑1 (MQ=60)
CATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACACCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAG < SRR4302547.5513954/94‑1 (MQ=60)
ATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCTTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGG < SRR4302547.3790680/94‑1 (MQ=60)
ATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGG < SRR4302547.3410614/94‑1 (MQ=60)
ATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGG > SRR4302547.6033286/1‑94 (MQ=60)
ATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGG < SRR4302547.6577352/94‑1 (MQ=60)
ATTCACAGTGGACTGAAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTCCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGG < SRR4302547.5034383/94‑1 (MQ=60)
TTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTCCTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGC < SRR4302547.727019/94‑1 (MQ=60)
TCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCG < SRR4302547.574445/94‑1 (MQ=60)
caagGTGGACTGGAATCTTTCCGTCAGCAGGCACCAGCCCATCCTTCCTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGC < SRR4302547.3921792/90‑1 (MQ=60)
CACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGC > SRR4302547.935042/1‑94 (MQ=60)
CACAGGGGTCTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTCCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGC < SRR4302547.1005401/94‑1 (MQ=60)
ACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCA > SRR4302547.4625039/1‑94 (MQ=60)
ACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCA > SRR4302547.5233293/1‑94 (MQ=60)
aagaGGACTGGAATGTTTGGGTCAGCAGGCACCGGCCCGCCCTTCCGCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAG < SRR4302547.4567380/90‑1 (MQ=60)
CAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAG < SRR4302547.6718247/94‑1 (MQ=60)
AGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGG < SRR4302547.1837596/94‑1 (MQ=60)
GACTGGAATCTTGCCGCCAGCAGGCCCCAGCCCATCCTTTCTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATT < SRR4302547.4270655/94‑1 (MQ=60)
GACGGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTCCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATT < SRR4302547.4657037/94‑1 (MQ=60)
ACTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTA > SRR4302547.70550/1‑94 (MQ=60)
CTGGAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAA > SRR4302547.773064/1‑94 (MQ=60)
GAAATCTTTGCGTCAGCAGCCCCCAGCCCACCTTTCCCCCCTTCCCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATC < SRR4302547.3097869/94‑1 (MQ=60)
GAATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCG > SRR4302547.6639372/1‑94 (MQ=60)
ATCTTTGCGTCAGCAGGCACCAGCCCCCCCTTACCCCCTCCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCT < SRR4302547.2374044/94‑1 (MQ=60)
ATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCT > SRR4302547.2167784/1‑94 (MQ=60)
ATCTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGAGCTCGCTTGCCAGGCGCAGGCATTAATCGCT > SRR4302547.4875433/1‑94 (MQ=60)
CTTTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGA > SRR4302547.695843/1‑94 (MQ=60)
TTGCGTCGGCAGCCCCCAGCCCACCCTTCCCCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAA < SRR4302547.3871373/94‑1 (MQ=60)
TTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAA > SRR4302547.4818616/1‑94 (MQ=60)
TTGCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCGCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAA < SRR4302547.1145752/94‑1 (MQ=60)
TGCTTCAGCAGGCCCCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAG < SRR4302547.4377364/94‑1 (MQ=60)
TGCGTCAGCAGGCACCAGCCCATCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAG < SRR4302547.5676129/94‑1 (MQ=60)
GCGTCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGC < SRR4302547.426005/94‑1 (MQ=60)
GCGTCAGCAGGCACCACCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGC < SRR4302547.6117898/94‑1 (MQ=60)
CGTCAGCGGCCACCAGCCCCCCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCG < SRR4302547.5101550/94‑1 (MQ=60)
GTCAGCAGGCACCAGCCCCCCCTTACTCCCTTCTGGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGG < SRR4302547.6300879/94‑1 (MQ=60)
TCAGCAGGCACCAGCCCATCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGT > SRR4302547.869968/1‑94 (MQ=60)
TCAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGT > SRR4302547.1264039/1‑94 (MQ=60)
CAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTG > SRR4302547.2512507/1‑94 (MQ=60)
CAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTG > SRR4302547.4682526/1‑94 (MQ=60)
CAGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTG > SRR4302547.5791209/1‑94 (MQ=60)
AGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTGC > SRR4302547.3182830/1‑94 (MQ=60)
AGCAGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTGC > SRR4302547.224416/1‑94 (MQ=60)
AGGCACCAGCCCATCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTGCGCA > SRR4302547.5498852/1‑94 (MQ=60)
AGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTGCGCA > SRR4302547.944730/1‑94 (MQ=60)
AGGCACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTGCGCA > SRR4302547.2187813/1‑94 (MQ=60)
GCACCAGCCCCCCCTTACCCCCTTCCCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTGCGCAAT < SRR4302547.5133573/94‑1 (MQ=60)
GCACCAGCCCATCCTTACTCCCTTCTCGAGCCACAACGCGTGATCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTGCGCAAT > SRR4302547.6584318/1‑94 (MQ=60)
CACCAGCCCCCCCTTCCTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCAAGGCGCAGGCATTAATCGCTGAAAGCGGTGCGCAATT < SRR4302547.1135511/94‑1 (MQ=60)
CACCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTGCGCAATT < SRR4302547.2020122/94‑1 (MQ=60)
CCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTGCGCAATTGC > SRR4302547.4069021/1‑94 (MQ=60)
CCAGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTGCGCAATTGC > SRR4302547.1528757/1‑94 (MQ=60)
CAGCCTACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGCAAGCGGCGCGCAATTGCC > SRR4302547.4043659/1‑94 (MQ=60)
AGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTGCGCAATTGCAG > SRR4302547.570689/1‑94 (MQ=60)
AGCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTGCGCAAATGCAG > SRR4302547.6114237/1‑94 (MQ=60)
GCCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTGCGCAATTGCACG > SRR4302547.1419767/1‑94 (MQ=60)
CCCCACCCTTGCTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTGCGCAATTGCAGG < SRR4302547.4088052/94‑1 (MQ=60)
CCCATCCTTACCCCCTCCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTGCGCAATTGCAGGG < SRR4302547.1742224/94‑1 (MQ=60)
CCCACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTGCGCAATTGCAGGG > SRR4302547.5267840/1‑94 (MQ=60)
CCACCCTTGCTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTGCGCAATTGCAGGGC > SRR4302547.1008942/1‑94 (MQ=60)
ACCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTGCGCAATTGCAGGGCAG > SRR4302547.1738483/1‑94 (MQ=60)
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ATCGCTGGATTTGCTGAGCCATCTGCCAGATGGTCAACCGGTGACAGACATTCACAGTGGACTGGAATCTTTGCGTCAGCAGGCACCAGCCCATCCTTACTCCCTTCTCGAGCCACAACGCGTGCTCGATCTCGCTTGCCAGGCGCAGGCATTAATCGCTGAAAGCGGTGCGCAATTGCAGGGCAG > NC_000913/2352413‑2352598
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
