Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCGATTCTGAAACTTACTTGCCACCGCTTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTTACCCAAATGCTCAAGCAGTTGT  >  NC_000913/2429681‑2429865
                                                                                             |                                                                                           
CCGATTCTGAAACTTACTTGCCACCGCTTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGCAAGAACCACACACCAGCACGGT                                                                                             >  SRR4302532.2467276/1‑94 (MQ=60)
CCGATTCTGAAACTTACTTGCCACCGCTTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGC                                                                                             >  SRR4302532.5398864/1‑94 (MQ=60)
 CGATTCTGAAACTTACTTGCCACCGCTTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTG                                                                                            >  SRR4302532.1649677/1‑94 (MQ=60)
 CGATTCTGAAACTTACTTGCCACCGCTTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTG                                                                                            <  SRR4302532.4798153/94‑1 (MQ=60)
 CGATTCTGAAACTTACTTGCCACCGCTTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCG                                                                                            >  SRR4302532.5295649/1‑94 (MQ=60)
    TTCTGAAACTTACTTGCCACCGCTTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCT                                                                                         <  SRR4302532.2650557/94‑1 (MQ=60)
       TGAAACTTACTTGCCACCGCTTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCC                                                                                      >  SRR4302532.1251098/1‑94 (MQ=60)
         AAACTTACTTGCCACCGCTTCTTCTCGCGTCAATCACTTCCATTACATGTGCGAAAGAGTGGAAAGAACAACACACCTGCACGGTGTCTTaccc                                                                                    >  SRR4302532.2680689/1‑90 (MQ=60)
         AAACTTACTTGCCACCGCTTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGCAAGAACCACACACCAGCACGGCGTCTTCCGC                                                                                    >  SRR4302532.876698/1‑94 (MQ=60)
          AACTTACTTGCCACCGCTTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCT                                                                                   >  SRR4302532.3445344/1‑94 (MQ=60)
          AACTTACTTGCCACCGCTTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCT                                                                                   <  SRR4302532.4767572/94‑1 (MQ=60)
            CTTACTTGCCACCGCTTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTT                                                                                 >  SRR4302532.5109449/1‑94 (MQ=60)
             TTACTTGCCACCGCTTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTA                                                                                >  SRR4302532.733153/1‑94 (MQ=60)
              TACTGGCCACCGCTTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAG                                                                               <  SRR4302532.1742447/94‑1 (MQ=60)
               cctacacgacgctcttccgatcttcgggatCTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGC                                                                              <  SRR4302532.1237138/64‑1 (MQ=60)
                 TTGCCACCGCTTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGT                                                                            >  SRR4302532.6158714/1‑94 (MQ=60)
                 CTGCCACCGCTTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGT                                                                            <  SRR4302532.2129449/94‑1 (MQ=60)
                  TGCCACCGCTTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTC                                                                           >  SRR4302532.6019093/1‑94 (MQ=60)
                   GCCACCGCTTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCC                                                                          <  SRR4302532.1655586/94‑1 (MQ=60)
                    CCACCGCTTCTCCTCGCGTCAATCACTTCCATGACATTTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCG                                                                         >  SRR4302532.1422158/1‑94 (MQ=60)
                    CCACCGCTTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCG                                                                         <  SRR4302532.2559899/94‑1 (MQ=60)
                    CCACCGCTTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCG                                                                         >  SRR4302532.1422157/1‑94 (MQ=60)
                     CACCGCTTCTCCTCGCGTCAATCACTTCCATGACATGTGGGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGC                                                                        >  SRR4302532.1755782/1‑94 (MQ=60)
                     CACCGCTTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGC                                                                        <  SRR4302532.4927874/94‑1 (MQ=60)
                     CACCGCTTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGC                                                                        >  SRR4302532.2272770/1‑94 (MQ=60)
                     CACCGCTTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGC                                                                        >  SRR4302532.6356339/1‑94 (MQ=60)
                        CGCTTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCAT                                                                     >  SRR4302532.2697302/1‑94 (MQ=60)
                          CTTCTCCTCGCGTCAATCACTTCTATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCACTG                                                                   >  SRR4302532.2557153/1‑94 (MQ=60)
                          CTTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTG                                                                   >  SRR4302532.2518041/1‑94 (MQ=60)
                          CTTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGAACGGAGTCTTCCGCTTTAGCGTCCGCCATTG                                                                   >  SRR4302532.1727709/1‑94 (MQ=60)
                           TTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGC                                                                  >  SRR4302532.4271676/1‑94 (MQ=60)
                           TTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGC                                                                  >  SRR4302532.4845802/1‑94 (MQ=60)
                           TTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGC                                                                  >  SRR4302532.4136242/1‑94 (MQ=60)
                             CTCCTTGTGTTAATCACGTCCATGACATGTGCGACCGTGTGGAAAGTACCATACACCAGCACGGTGTCTTCCGCCTTAGCGTCCGCCATTGCGG                                                                >  SRR4302532.5677134/1‑94 (MQ=60)
                             CTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGG                                                                >  SRR4302532.6247949/1‑94 (MQ=60)
                             CTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCAAACACCAGCACGGAGTCTTCCGCTTTAGCGTCCGACATTGCGG                                                                >  SRR4302532.1975922/1‑94 (MQ=60)
                              TCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGC                                                               <  SRR4302532.4813958/94‑1 (MQ=60)
                               CCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCA                                                              >  SRR4302532.2985884/1‑94 (MQ=60)
                               CCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCA                                                              >  SRR4302532.6280040/1‑94 (MQ=60)
                                CTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCAT                                                             <  SRR4302532.4916648/94‑1 (MQ=60)
                                CTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCAT                                                             <  SRR4302532.1249042/94‑1 (MQ=60)
                                CTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCAT                                                             >  SRR4302532.2747901/1‑94 (MQ=60)
                                   GCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCC                                                          <  SRR4302532.5447708/94‑1 (MQ=60)
                                   GCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCC                                                          <  SRR4302532.751311/94‑1 (MQ=60)
                                    CGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCA                                                         >  SRR4302532.5089910/1‑94 (MQ=60)
                                    CGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCA                                                         >  SRR4302532.5980909/1‑94 (MQ=60)
                                    CGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCA                                                         >  SRR4302532.3202523/1‑94 (MQ=60)
                                    CGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCA                                                         >  SRR4302532.1566786/1‑94 (MQ=60)
                                     GTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCAT                                                        <  SRR4302532.388683/94‑1 (MQ=60)
                                     GTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCAT                                                        >  SRR4302532.1074897/1‑94 (MQ=60)
                                     GTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCAT                                                        <  SRR4302532.1420307/94‑1 (MQ=60)
                                     GTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCAT                                                        <  SRR4302532.473518/94‑1 (MQ=60)
                                     GTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCAT                                                        <  SRR4302532.2318901/94‑1 (MQ=60)
                                      TCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGCACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATG                                                       >  SRR4302532.575276/1‑94 (MQ=60)
                                      TCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATG                                                       >  SRR4302532.3159630/1‑94 (MQ=60)
                                      TCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATG                                                       >  SRR4302532.2488757/1‑94 (MQ=60)
                                      TCAATCACTTCCATGACATGTGCGACCGTGGGTAAAGAACCACACACCAGCACGGCGTCTTCCGCGTTAGCGTCCGCCATTGCGGCATCCCATG                                                       >  SRR4302532.5264138/1‑94 (MQ=60)
                                      TCAATCACTTCCATGACAGGTGCGACCGTGTGGAAAGAACCACGCACCAGCCCGTTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATG                                                       <  SRR4302532.4848979/94‑1 (MQ=60)
                                      GCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATG                                                       <  SRR4302532.4998791/94‑1 (MQ=60)
                                       CAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGC                                                      >  SRR4302532.4436177/1‑94 (MQ=60)
                                        AATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCC                                                     >  SRR4302532.173889/1‑94 (MQ=60)
                                        AATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCC                                                     >  SRR4302532.185625/1‑94 (MQ=60)
                                         ATCCCTTCCATGACATGTGCGACCGTGTGGAAAGAACCACCCACCAGCACGGCGTCTTCCCCTTTAGCGCCCGCCATTGCGGCATCCCATGCCT                                                    <  SRR4302532.1422013/94‑1 (MQ=60)
                                         ATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACCCACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCT                                                    <  SRR4302532.1806840/94‑1 (MQ=60)
                                         ATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCT                                                    <  SRR4302532.964137/94‑1 (MQ=60)
                                          TCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTG                                                   >  SRR4302532.1363316/1‑94 (MQ=60)
                                           CACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGC                                                  >  SRR4302532.2733911/1‑94 (MQ=60)
                                            ACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCG                                                 >  SRR4302532.1576746/1‑94 (MQ=60)
                                            ACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCG                                                 >  SRR4302532.2986813/1‑94 (MQ=60)
                                            ACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGGGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCG                                                 >  SRR4302532.1576968/1‑94 (MQ=60)
                                               TCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAC                                              >  SRR4302532.5407864/1‑94 (MQ=60)
                                                CCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAAC                                             >  SRR4302532.3300223/1‑94 (MQ=60)
                                                  ATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGC                                           >  SRR4302532.6283781/1‑94 (MQ=60)
                                                    GACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTA                                         <  SRR4302532.2930196/94‑1 (MQ=60)
                                                     ACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATTCCATTCCCTCGCAACTCTAT                                        >  SRR4302532.5219715/1‑94 (MQ=60)
                                                     ACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTAT                                        <  SRR4302532.6153934/94‑1 (MQ=60)
                                                     ACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTAT                                        <  SRR4302532.6153933/94‑1 (MQ=60)
                                                      CATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATC                                       <  SRR4302532.3348139/94‑1 (MQ=60)
                                                      CATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATC                                       >  SRR4302532.1596451/1‑94 (MQ=60)
                                                      CATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATC                                       >  SRR4302532.266806/1‑94 (MQ=60)
                                                       ATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCAGCCATTGCGGCATCCCATGCCTGCGCAAAGCTATCA                                      >  SRR4302532.1362457/1‑94 (MQ=60)
                                                       ATGTGAGACCGTGTAGAAACAACCGCACACCAGCACGGCGTCGTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCA                                      <  SRR4302532.1458335/94‑1 (MQ=60)
                                                        TGTGCGCCCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAA                                     <  SRR4302532.6046981/94‑1 (MQ=60)
                                                        TGGGCGCCCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAA                                     <  SRR4302532.6046983/94‑1 (MQ=60)
                                                          TGCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAAT                                   <  SRR4302532.789564/94‑1 (MQ=60)
                                                           GCGACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATG                                  <  SRR4302532.3212717/94‑1 (MQ=60)
                                                            CGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGA                                 <  SRR4302532.4904255/94‑1 (MQ=60)
                                                             GACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGAT                                >  SRR4302532.4418620/1‑94 (MQ=60)
                                                             GACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGAT                                >  SRR4302532.475759/1‑94 (MQ=60)
                                                             GACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGAT                                >  SRR4302532.5944114/1‑94 (MQ=60)
                                                             GACCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGAT                                >  SRR4302532.3704463/1‑94 (MQ=60)
                                                              ACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATT                               <  SRR4302532.3439787/94‑1 (MQ=60)
                                                               CCGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTT                              <  SRR4302532.890303/94‑1 (MQ=60)
                                                                CGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTG                             >  SRR4302532.4791164/1‑94 (MQ=60)
                                                                CGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTG                             >  SRR4302532.694715/1‑94 (MQ=60)
                                                                CGTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCAGCGCAACGCTATCAAATGATTTG                             >  SRR4302532.4447793/1‑94 (MQ=60)
                                                                 GTGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTTC                            >  SRR4302532.2555567/1‑94 (MQ=60)
                                                                  TGTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCC                           <  SRR4302532.4656275/94‑1 (MQ=60)
                                                                   GTGGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCG                          <  SRR4302532.1091778/94‑1 (MQ=60)
                                                                     GGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTT                        >  SRR4302532.6353240/1‑94 (MQ=60)
                                                                     GGAAAGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTT                        >  SRR4302532.1414634/1‑94 (MQ=60)
                                                                        AAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTTACC                     <  SRR4302532.3134445/94‑1 (MQ=60)
                                                                         AGAACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTTACCC                    >  SRR4302532.1867707/1‑94 (MQ=60)
                                                                            ACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTTACCCAAA                 >  SRR4302532.662229/1‑94 (MQ=60)
                                                                            ACCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTTACCCAAA                 >  SRR4302532.361149/1‑94 (MQ=60)
                                                                             CCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTTACCCAAAT                >  SRR4302532.1751484/1‑94 (MQ=60)
                                                                             CCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTTACCCAAAT                <  SRR4302532.6154250/94‑1 (MQ=60)
                                                                             CCACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTTACCCAAAT                <  SRR4302532.3081849/94‑1 (MQ=60)
                                                                              CACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGTCGTTACCCAAATG               >  SRR4302532.4659670/1‑94 (MQ=60)
                                                                              CACACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTTACCCAAATG               >  SRR4302532.2342222/1‑94 (MQ=60)
                                                                               ACGCACCAGCACGGTGTCTTCCGCTTTAGGCTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTTACCCAAATGC              <  SRR4302532.5138812/94‑1 (MQ=60)
                                                                                CACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTTACCCAAATGCT             <  SRR4302532.2482527/94‑1 (MQ=60)
                                                                                CACACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCAATGCGGCATACCATGCCTGCGCAACGCTATCAACTGATTTGCCGTTACCCAAATGCT             >  SRR4302532.3255599/1‑94 (MQ=60)
                                                                                 CCACCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTTACCCAAATGCTC            <  SRR4302532.1692889/94‑1 (MQ=60)
                                                                                   CCCAGCGCGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTTACCCAAATGCTCAA          <  SRR4302532.1976523/94‑1 (MQ=60)
                                                                                   ACCAGCACGGTGTCTTGCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTTACCCAAATGCTCAA          <  SRR4302532.4344483/94‑1 (MQ=60)
                                                                                   ACCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTTACCCAAATGCTCAA          <  SRR4302532.4344485/94‑1 (MQ=60)
                                                                                    CCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTTACCCAAATGCTCAAG         <  SRR4302532.4086261/94‑1 (MQ=60)
                                                                                    CCAGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTTACCCAAATGCTCAAG         <  SRR4302532.3360917/94‑1 (MQ=60)
                                                                                     cggccCGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCCACGCTATCAAATGATTTGCCGTTACCCAAATGCTCCAGC        <  SRR4302532.5664195/89‑1 (MQ=60)
                                                                                     CAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTTACCCAAATGCTCAAGC        <  SRR4302532.4181522/94‑1 (MQ=60)
                                                                                      AGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTTACCCAAATGCTCAAGCA       >  SRR4302532.1907071/1‑94 (MQ=60)
                                                                                      AGCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTAGCCGTTTCCCAAATGCTCAAGCA       >  SRR4302532.3609562/1‑94 (MQ=60)
                                                                                       GCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTTACCCAAATGCTCAAGCAG      <  SRR4302532.4655951/94‑1 (MQ=60)
                                                                                       GCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTTACCCAAATGCTCAAGCAG      >  SRR4302532.440542/1‑94 (MQ=60)
                                                                                       GCACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTTACCCAAATGCTCAAGCAG      <  SRR4302532.5633731/94‑1 (MQ=60)
                                                                                         ACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTTACCCAAATGCTCAAGCAGTT    >  SRR4302532.6264636/1‑94 (MQ=60)
                                                                                         ACGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTTACCCAAATGCTCAAGCAGTT    >  SRR4302532.1870841/1‑94 (MQ=60)
                                                                                          CGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTTACCCAAATGCTCAAGCAGTTG   <  SRR4302532.4808508/94‑1 (MQ=60)
                                                                                          CGGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCAATGCCTGCGCAACGCTATCAAATGATTTGCCGTTACCCAAATGCTCAAGCAGTTG   >  SRR4302532.517496/1‑94 (MQ=60)
                                                                                           GGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTTACCCAAATGCTCAAGCAGTTGT  >  SRR4302532.3370986/1‑94 (MQ=60)
                                                                                           GGCGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTTACCCAAATGCTCAAGCAGTTGT  >  SRR4302532.4389102/1‑94 (MQ=60)
                                                                                             |                                                                                           
CCGATTCTGAAACTTACTTGCCACCGCTTCTCCTCGCGTCAATCACTTCCATGACATGTGCGACCGTGTGGAAAGAACCACACACCAGCACGGTGTCTTCCGCTTTAGCGTCCGCCATTGCGGCATCCCATGCCTGCGCAACGCTATCAAATGATTTGCCGTTACCCAAATGCTCAAGCAGTTGT  >  NC_000913/2429681‑2429865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑