Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGAAGTTGTCCGGTTTAGCGGAGACAAACACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAACATTAAGGGTAAACGCTGATG  >  NC_000913/2456984‑2457169
                                                                                             |                                                                                            
TGAAGTTGTCCGGTTTAGCGGAGACAAACACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGGTTAATAATGGCGCGCACCTGCGAGGCAAG                                                                                              >  SRR4302532.4297600/1‑94 (MQ=60)
 GAAGTTGTCCGGTTTAGCGGAGACAAACACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGC                                                                                             >  SRR4302532.4213894/1‑94 (MQ=60)
 GAAGTTGTCCGGTTTAGCGGAGACAAACACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGC                                                                                             >  SRR4302532.2232143/1‑94 (MQ=60)
  AAGTTGTCCGGTTTAGCGGAGACAAACACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACT                                                                                            <  SRR4302532.865282/94‑1 (MQ=60)
   AGTTGTCCGGTTTAGCGGAGACAAACACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTC                                                                                           >  SRR4302532.3712943/1‑94 (MQ=60)
    GTTGTCCGGTTTAGCGGAGACAAACACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCC                                                                                          <  SRR4302532.5591623/94‑1 (MQ=60)
    GTTGTCCGGTTTAGCGGAGACAAACACCACGCCTCGCAACTCTTTGTTTTCACGGAGGTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCC                                                                                          >  SRR4302532.345240/1‑94 (MQ=60)
        TCCGGTTTAGCGGAGACAAACACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCT                                                                                      <  SRR4302532.2091159/94‑1 (MQ=60)
        TCCGGTTTAGCGGAGACAAACACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCT                                                                                      <  SRR4302532.4240798/94‑1 (MQ=60)
        TCCGGTTTAGCGGAGACAAACACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCT                                                                                      >  SRR4302532.3538235/1‑94 (MQ=60)
         CCGGTTTAGCGGAGACAAACACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTT                                                                                     >  SRR4302532.4041718/1‑94 (MQ=60)
           GGTTTAGCGGAGACAAACACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCA                                                                                   <  SRR4302532.2506328/94‑1 (MQ=60)
            GTTTAGCGGAGACAAACACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAG                                                                                  <  SRR4302532.5000720/94‑1 (MQ=60)
            GTTTAGCGGAGACAAACACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAG                                                                                  <  SRR4302532.689434/94‑1 (MQ=60)
             TTTAGCGGAGACAAACACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGG                                                                                 <  SRR4302532.3733194/94‑1 (MQ=60)
             TTTAGCGGAGACAAACACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGG                                                                                 <  SRR4302532.207281/94‑1 (MQ=60)
             TTTAGCGAAGACAAACACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACCCCGCCTTCAGG                                                                                 <  SRR4302532.2439906/94‑1 (MQ=60)
              TTAGCGGAGACAAACACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGG                                                                                <  SRR4302532.4124437/94‑1 (MQ=60)
                  CGGAGACAAACACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATT                                                                            >  SRR4302532.4705536/1‑94 (MQ=60)
                   GGAGACAAACACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTC                                                                           <  SRR4302532.1266486/94‑1 (MQ=60)
                    GAGACAAACACCACGCCTCGCATCTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCA                                                                          <  SRR4302532.1064585/94‑1 (MQ=60)
                    GAGACAAACACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCA                                                                          <  SRR4302532.204840/94‑1 (MQ=60)
                     AGACAAACACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCAT                                                                         >  SRR4302532.1329935/1‑94 (MQ=60)
                     AGACAAACACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCAT                                                                         >  SRR4302532.6211364/1‑94 (MQ=60)
                       ACAAACACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTT                                                                       >  SRR4302532.3271564/1‑94 (MQ=60)
                       ACAAACACCACGCCTCGCAACTCTTTGTTTTCACGGAGATGCTTAATAATGGCGCGCACCTGCGCGGCAAACTCCGCCTTCAGGGTATTCATTT                                                                       >  SRR4302532.2221146/1‑94 (MQ=60)
                        CAAACACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGGGCGCACCTCCGGGGCAAACTCCGCCTTCggggattgcttttt                                                                      >  SRR4302532.4888153/1‑80 (MQ=60)
                         AAACACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTC                                                                     >  SRR4302532.2386574/1‑94 (MQ=60)
                          AACACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCT                                                                    <  SRR4302532.3275183/94‑1 (MQ=60)
                             ACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCAC                                                                 <  SRR4302532.4567610/94‑1 (MQ=60)
                             ACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCAC                                                                 <  SRR4302532.3074942/94‑1 (MQ=60)
                             ACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCAC                                                                 >  SRR4302532.5020434/1‑94 (MQ=60)
                              CCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACC                                                                >  SRR4302532.3660436/1‑94 (MQ=60)
                                 CGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGG                                                             <  SRR4302532.3530924/94‑1 (MQ=60)
                                  GCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGT                                                            <  SRR4302532.5883265/94‑1 (MQ=60)
                                  GCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGT                                                            <  SRR4302532.518661/94‑1 (MQ=60)
                                   CCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCATGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTA                                                           <  SRR4302532.6293644/94‑1 (MQ=60)
                                   CCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTA                                                           >  SRR4302532.1479060/1‑94 (MQ=60)
                                   CCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTA                                                           >  SRR4302532.6070406/1‑94 (MQ=60)
                                   CCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTA                                                           >  SRR4302532.6240675/1‑94 (MQ=60)
                                    CTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTAC                                                          >  SRR4302532.1584593/1‑94 (MQ=60)
                                     TCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACG                                                         <  SRR4302532.6205274/94‑1 (MQ=60)
                                     TCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACG                                                         <  SRR4302532.6074275/94‑1 (MQ=60)
                                      CGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGT                                                        >  SRR4302532.1179492/1‑94 (MQ=60)
                                      CGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGT                                                        >  SRR4302532.3364561/1‑94 (MQ=60)
                                      CGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGT                                                        >  SRR4302532.2302040/1‑94 (MQ=60)
                                      CGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGT                                                        <  SRR4302532.1802090/94‑1 (MQ=60)
                                      CGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGT                                                        <  SRR4302532.3477995/94‑1 (MQ=60)
                                       GCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTC                                                       >  SRR4302532.364443/1‑94 (MQ=60)
                                       GCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTC                                                       >  SRR4302532.3386925/1‑94 (MQ=60)
                                        CAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCG                                                      >  SRR4302532.4473876/1‑94 (MQ=60)
                                            TCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGG                                                  >  SRR4302532.664733/1‑94 (MQ=60)
                                            TCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGG                                                  >  SRR4302532.5947303/1‑94 (MQ=60)
                                            TCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGG                                                  >  SRR4302532.367177/1‑94 (MQ=60)
                                             CTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGT                                                 <  SRR4302532.3224507/94‑1 (MQ=60)
                                             CTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGT                                                 <  SRR4302532.5024279/94‑1 (MQ=60)
                                              TTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTG                                                <  SRR4302532.2677680/94‑1 (MQ=60)
                                               TTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGA                                               >  SRR4302532.5912175/1‑94 (MQ=60)
                                                gtttgcctCGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATatcccg                                              >  SRR4302532.2975538/9‑88 (MQ=60)
                                                TGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGAT                                              <  SRR4302532.4516162/94‑1 (MQ=60)
                                                 GTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATA                                             <  SRR4302532.3264660/94‑1 (MQ=60)
                                                 GTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATA                                             >  SRR4302532.2708684/1‑94 (MQ=60)
                                                 GTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATA                                             <  SRR4302532.6178493/94‑1 (MQ=60)
                                                    TTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACG                                          >  SRR4302532.6139358/1‑94 (MQ=60)
                                                    TTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACG                                          >  SRR4302532.4609602/1‑94 (MQ=60)
                                                     TCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGG                                         <  SRR4302532.707233/94‑1 (MQ=60)
                                                     TCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGG                                         <  SRR4302532.560324/94‑1 (MQ=60)
                                                     TCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGG                                         <  SRR4302532.560323/94‑1 (MQ=60)
                                                        CGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAA                                      >  SRR4302532.5760102/1‑94 (MQ=60)
                                                        CGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGAATTCATTTTCTCACCCGGTACGTCGATGGTGATAAAGGCAA                                      >  SRR4302532.619636/1‑94 (MQ=60)
                                                        CGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGAATTCATTTTCTCACCCGGGACGTCGATGGTGATAACGGCAA                                      >  SRR4302532.619635/1‑94 (MQ=60)
                                                          GAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATG                                    <  SRR4302532.3352556/94‑1 (MQ=60)
                                                           AGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGT                                   >  SRR4302532.1296187/1‑94 (MQ=60)
                                                            GTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTCCGTCGATGGTGATAACGGCAATGTT                                  >  SRR4302532.4828807/1‑94 (MQ=60)
                                                            GTTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTT                                  >  SRR4302532.4828963/1‑94 (MQ=60)
                                                             TTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTG                                 <  SRR4302532.2704151/94‑1 (MQ=60)
                                                             TTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTG                                 <  SRR4302532.1051485/94‑1 (MQ=60)
                                                             TTGCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTG                                 <  SRR4302532.3533246/94‑1 (MQ=60)
                                                              TGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGT                                <  SRR4302532.2672079/94‑1 (MQ=60)
                                                               GCTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTC                               >  SRR4302532.2121428/1‑94 (MQ=60)
                                                               GCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATATTGTC                               >  SRR4302532.28699/1‑94 (MQ=60)
                                                                CTTAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCC                              >  SRR4302532.4572414/1‑94 (MQ=60)
                                                                 TTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCA                             >  SRR4302532.1684322/1‑94 (MQ=60)
                                                                  TAATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAG                            >  SRR4302532.2025659/1‑94 (MQ=60)
                                                                   AATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGGTGTCCAGA                           >  SRR4302532.4083973/1‑94 (MQ=60)
                                                                    ATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGAC                          >  SRR4302532.4998541/1‑94 (MQ=60)
                                                                    ATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGAC                          <  SRR4302532.3937126/94‑1 (MQ=60)
                                                                    ATAATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGACACTGTTGGCCAGAC                          >  SRR4302532.4321487/1‑94 (MQ=60)
                                                                     TAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACG                         >  SRR4302532.867895/1‑94 (MQ=60)
                                                                       ATGGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAA                       >  SRR4302532.1890052/1‑94 (MQ=60)
                                                                        TGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAAC                      >  SRR4302532.4192381/1‑94 (MQ=60)
                                                                         GGCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAACA                     <  SRR4302532.4718708/94‑1 (MQ=60)
                                                                          GCGCGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAACAT                    <  SRR4302532.4274837/94‑1 (MQ=60)
                                                                          GCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAACAT                    <  SRR4302532.2923780/94‑1 (MQ=60)
                                                                          GCGCGCACCGGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAACAT                    <  SRR4302532.1658397/94‑1 (MQ=60)
                                                                           CGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAACATT                   <  SRR4302532.3310491/94‑1 (MQ=60)
                                                                             CGCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAACATTAA                 <  SRR4302532.5768602/94‑1 (MQ=60)
                                                                              GCACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAACATTAAG                >  SRR4302532.1215002/1‑94 (MQ=60)
                                                                               CACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACTCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAACATTAAGG               <  SRR4302532.2993335/94‑1 (MQ=60)
                                                                               CACCTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAACATTAAGG               <  SRR4302532.2634494/94‑1 (MQ=60)
                                                                                  CTGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAACATTAAGGGTA            >  SRR4302532.6193654/1‑94 (MQ=60)
                                                                                   TGCGAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAACATTAAGGGTAA           >  SRR4302532.1766263/1‑94 (MQ=60)
                                                                                      GAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAACATTAAGGGTAAACG        >  SRR4302532.1465994/1‑94 (MQ=60)
                                                                                      GAGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAACATTAAGGGTAAACG        >  SRR4302532.2479190/1‑94 (MQ=60)
                                                                                       AGGCAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAACATTAAGGGTAAACGC       <  SRR4302532.2479562/94‑1 (MQ=60)
                                                                                       AGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAACATTAAGGGTAAACGC       >  SRR4302532.441032/1‑94 (MQ=60)
                                                                                         GCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAACATTAAGGGTAAACGCTG     <  SRR4302532.5334538/94‑1 (MQ=60)
                                                                                          CAAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAACATTAAGGGTAAACGCTGA    >  SRR4302532.1578140/1‑94 (MQ=60)
                                                                                          CAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAACATTAAGGGTAAACGCTGA    >  SRR4302532.552195/1‑94 (MQ=60)
                                                                                           AAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAACATTAAGGGTAAACGCTGAT   <  SRR4302532.2047758/94‑1 (MQ=60)
                                                                                           AAGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAACATTAAGGGTAAACGCTGAT   >  SRR4302532.147549/1‑94 (MQ=60)
                                                                                           AAACTCCGCGTGCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAACATTAAGGGTAAACGCTGAT   <  SRR4302532.194502/94‑1 (MQ=60)
                                                                                           AAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAACATTAAGGGTAAACGCTGAT   >  SRR4302532.4353253/1‑94 (MQ=60)
                                                                                           AAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAACATTAAGGGTAAACGCTGAT   <  SRR4302532.5709549/94‑1 (MQ=60)
                                                                                           AAACTCCGCCTTCAGGGTATTCATTGTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAACATTAAGGGTAAACGCTGAT   <  SRR4302532.194503/94‑1 (MQ=60)
                                                                                            AGCTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAACATTAAGGGTAAACGCTGATG  <  SRR4302532.5961400/94‑1 (MQ=60)
                                                                                            AACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAACATTAAGGGTAAACGCTGATG  <  SRR4302532.1192578/94‑1 (MQ=60)
                                                                                             |                                                                                            
TGAAGTTGTCCGGTTTAGCGGAGACAAACACCACGCCTCGCAACTCTTTGTTTTCACGGAGTTGCTTAATAATGGCGCGCACCTGCGAGGCAAACTCCGCCTTCAGGGTATTCATTTTCTCACCCGGTACGTCGATGGTGATAACGGCAATGTTGTCCAGACGAACATTAAGGGTAAACGCTGATG  >  NC_000913/2456984‑2457169

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑