Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGAGCATATCCGCCAGGATGGTGAAAAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTA  >  NC_000913/2463443‑2463627
                                                                                           |                                                                                             
TGAGCATATCCGCCAGGATGGTGAAAAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCGCT                                                                                             <  SRR4302532.6221924/94‑1 (MQ=60)
  AGCATATCCGCCAGGATGGTGAAAAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCACTTC                                                                                           <  SRR4302532.2332233/94‑1 (MQ=60)
  AGCATATCCGCCAGGATGGTGAAAAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGGCTGTCGATGGGCACTTC                                                                                           >  SRR4302532.731811/1‑94 (MQ=60)
   GCATATCCGCCAGGATGGTGAAAAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCGCTTCG                                                                                          <  SRR4302532.604495/94‑1 (MQ=60)
     ccgagatctacactctttccctacacgacgctcttcctatcttcgggaTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTT                                                                                        <  SRR4302532.216523/46‑1 (MQ=60)
     ATATCCGCCAGGATGGTGAAAAGGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCGCTTCGTT                                                                                        <  SRR4302532.5857540/94‑1 (MQ=60)
     ATATCCGCCAGGATGGTGAAAAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGGCTGTCGATGGGGACTTCGTT                                                                                        >  SRR4302532.2777359/1‑94 (MQ=60)
       ATCCGCCAGGATGGTGAAAAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGGCTGTCGATGGGGACTTCGTTAC                                                                                      >  SRR4302532.2961308/1‑94 (MQ=60)
        TCCGCCAGGATGGTGAAAAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTTACT                                                                                     <  SRR4302532.6300076/94‑1 (MQ=60)
        TCCGACAGGATGGTGAAAAAGAGCTGGAACGCGCCGCAATGGTGTGACTGTGGTCCGCCAGTGCGGCGGGTCTGTCGATGGGCCCTTCGGTACT                                                                                     <  SRR4302532.6298016/94‑1 (MQ=53)
          CGCCAGGATGGTGAAAAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTTACTGG                                                                                   <  SRR4302532.4229164/94‑1 (MQ=60)
           GCCAGGATGGTGAAAAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGC                                                                                  <  SRR4302532.4552013/94‑1 (MQ=60)
           GCCAGGATGGTGAAAAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTTACTGGC                                                                                  <  SRR4302532.1350478/94‑1 (MQ=60)
           CCCAGGATGGTGAAAAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTTACTGGC                                                                                  <  SRR4302532.1350477/94‑1 (MQ=60)
              AGGATGGTGAAAAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCGGCCATTGCGGCGGGGCTGTCGATGGGGGCTTCGTTACTGGCAAA                                                                               >  SRR4302532.5105534/1‑94 (MQ=60)
               GGATGGTGAAAAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAA                                                                              >  SRR4302532.5539960/1‑94 (MQ=60)
               GGATGGTGAAAAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGGCTGTCGGTGGGCGCTTCGTTACTGGCAAAA                                                                              >  SRR4302532.1047176/1‑94 (MQ=60)
               GGATGGTGAAAAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGGCTGTCGATGGGGGCTTCGGTACTGGGAAAA                                                                              >  SRR4302532.80539/1‑94 (MQ=60)
                TATGGTGAAAAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAG                                                                             >  SRR4302532.3238642/1‑94 (MQ=60)
                GATGGTGAAAAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAG                                                                             <  SRR4302532.4733962/94‑1 (MQ=60)
                GATGGTGAAAAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAG                                                                             <  SRR4302532.4867230/94‑1 (MQ=60)
                GATGGTGAAAAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTTTCTGGCAAAAG                                                                             >  SRR4302532.245784/1‑94 (MQ=60)
                GATGGTGAAAAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTTACTGGCAAAAG                                                                             <  SRR4302532.4915294/94‑1 (MQ=60)
                 ATGGTGAAAAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGG                                                                            <  SRR4302532.3221564/94‑1 (MQ=60)
                 ATGGTGAAAAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGGCTGTCGATGGGGGGTTCGTTACTGGGAAAAAG                                                                            >  SRR4302532.337326/1‑94 (MQ=60)
                    GTGAAAAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTTACTGGCAAAAGGGAA                                                                         >  SRR4302532.6329537/1‑94 (MQ=60)
                     TGAAAAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATA                                                                        <  SRR4302532.3105055/94‑1 (MQ=60)
                     TAAAAAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTTACTGGCAAAAGGGATA                                                                        <  SRR4302532.5724407/94‑1 (MQ=60)
                      GAAAAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTTACTGGCAAAAGGGATAT                                                                       <  SRR4302532.2412061/94‑1 (MQ=60)
                      AAAAAAGAGCGGGAACGCGACGCAAGGGCGCTACTGGGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATAT                                                                       <  SRR4302532.2490395/94‑1 (MQ=60)
                       AAAAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATT                                                                      <  SRR4302532.3843610/94‑1 (MQ=60)
                         AAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGGACTTCGTTACTGGCCAAAGGGGTATTTC                                                                    >  SRR4302532.1669059/1‑94 (MQ=60)
                         AAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTC                                                                    >  SRR4302532.4910071/1‑94 (MQ=60)
                          AAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGGACTTCGTTACTGGCAAAAGGGATATTTCA                                                                   >  SRR4302532.1299003/1‑94 (MQ=60)
                           AGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAA                                                                  <  SRR4302532.4207490/94‑1 (MQ=60)
                           AGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTTACTGGCAAAAGGGATATTTCAA                                                                  <  SRR4302532.4544805/94‑1 (MQ=60)
                           AGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGGCTGTCGATGGGCACTTCGTTACTGGCAAAAGGGATATTTCAA                                                                  >  SRR4302532.5838225/1‑94 (MQ=60)
                            GAGCTGGAGCGCGGCGCAATGGCGCTACTGTGGTCAGAAATTGCGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAG                                                                 <  SRR4302532.4087334/94‑1 (MQ=60)
                            GAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAG                                                                 <  SRR4302532.1542125/94‑1 (MQ=60)
                            GAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTTACTGGCAAAAGGGATATTTCAAG                                                                 <  SRR4302532.2378382/94‑1 (MQ=60)
                            GAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTTACTGGCAAAAGGGATATTTCAAG                                                                 <  SRR4302532.328410/94‑1 (MQ=60)
                            GAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTTACTGGCAAAAGGGATATTTCAAG                                                                 <  SRR4302532.2398794/94‑1 (MQ=60)
                              GCTGAAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTC                                                               <  SRR4302532.2441596/94‑1 (MQ=60)
                               CTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTTACTGGCAAAAGGGATATTTCAAGTCG                                                              <  SRR4302532.5275229/94‑1 (MQ=60)
                               CTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGGCTGTCGATGGGGACTTCGTTACTGGCCAAAGGGATATTTCAAGTCG                                                              >  SRR4302532.5636784/1‑94 (MQ=60)
                                  gaacgcgcggcaagggcgctagtggggtcggccttgggGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAAC                                                           <  SRR4302532.1367594/56‑1 (MQ=60)
                                   ACCGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACT                                                          <  SRR4302532.5626025/94‑1 (MQ=60)
                                   AACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACT                                                          <  SRR4302532.5227728/94‑1 (MQ=60)
                                    ACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTG                                                         <  SRR4302532.3586358/94‑1 (MQ=60)
                                     CGCTACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGGCCGTCGATGGGCACTTCGGTACTGGTCAAAAGGATAATTCAAGACGAAATGG                                                        >  SRR4302532.5689121/1‑94 (MQ=40)
                                     CGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCGCTTTGTTACTGGCAAAAGGGATATTTCAAGTCGAACCGG                                                        >  SRR4302532.5482160/1‑94 (MQ=60)
                                     CGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGG                                                        >  SRR4302532.917708/1‑94 (MQ=60)
                                     CGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGG                                                        <  SRR4302532.2181865/94‑1 (MQ=60)
                                     CGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGG                                                        <  SRR4302532.116602/94‑1 (MQ=60)
                                     CGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGGCTGTCGATGGGGACTTCGTTACTGGCAAAAGGGGTATTTCAAGTCGAACTGG                                                        >  SRR4302532.4680239/1‑94 (MQ=60)
                                       CGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAA                                                      >  SRR4302532.6001488/1‑94 (MQ=60)
                                        GACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAG                                                     <  SRR4302532.2919452/94‑1 (MQ=60)
                                          CGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGGGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGGAGGT                                                   >  SRR4302532.3210479/1‑94 (MQ=60)
                                          CGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGG                                                   >  SRR4302532.889466/1‑94 (MQ=60)
                                           GCAATGGCGCTACTGTGGTCAGCCATTGCGTCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTG                                                  <  SRR4302532.5467010/94‑1 (MQ=60)
                                             AATGGCGCTACTGTGGTCAGCCATTGCGGCGGGGCTGTCGATGGGCACTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGgggg                                                >  SRR4302532.148848/1‑90 (MQ=60)
                                               TGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCC                                              <  SRR4302532.2398711/94‑1 (MQ=60)
                                                GGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGGACTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGGGTGCCG                                             >  SRR4302532.2556088/1‑94 (MQ=60)
                                                  CGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGG                                           <  SRR4302532.1174378/94‑1 (MQ=60)
                                                  CGCTACTGTGGCAAGCCGTTGCGGCGGGTCTGTCGATGGGCGCTTCGATACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGG                                           <  SRR4302532.5669945/94‑1 (MQ=60)
                                                    CTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGGAGGGGTGCCGGGCG                                         >  SRR4302532.4894472/1‑94 (MQ=60)
                                                    CTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCA                                         <  SRR4302532.6350124/94‑1 (MQ=60)
                                                     TACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAG                                        <  SRR4302532.562113/94‑1 (MQ=60)
                                                     TACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAG                                        >  SRR4302532.965130/1‑94 (MQ=60)
                                                      ACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTTAtcccgaagatcggaagagcgtcgtgtagggaaagagtgtagatctcgg                                       >  SRR4302532.5139769/1‑46 (MQ=60)
                                                      ACTGTGGTCAGCCATTGCGGCGGATCTGTCGATGGGCACTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGC                                       <  SRR4302532.4443229/94‑1 (MQ=60)
                                                        TGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTT                                     >  SRR4302532.6303030/1‑94 (MQ=60)
                                                         GTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTC                                    >  SRR4302532.299977/1‑94 (MQ=60)
                                                         GTGGTCAGCCATTGCGGCGGGTATGTCGATGGGCACTTCGTTACTGGCAAAAGGGAAATTTCAAGTCGAACTGGAAGGTGTGCCGGGCCGCTTC                                    >  SRR4302532.4235704/1‑94 (MQ=60)
                                                          TGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCT                                   >  SRR4302532.1184519/1‑94 (MQ=60)
                                                           GGTCGCCCATGGCGGCGGGTCTGTCGATGGGCACTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTT                                  <  SRR4302532.3551996/94‑1 (MQ=60)
                                                            GTCAGCCATTGCGGCGGGTCTGTGGATGGGCACTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTG                                 <  SRR4302532.3614725/94‑1 (MQ=60)
                                                               AGCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTG                              <  SRR4302532.3395615/94‑1 (MQ=60)
                                                                GCCATTGCGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGG                             <  SRR4302532.4695660/94‑1 (MQ=60)
                                                                GCCATTGCGGCGGGTCTGTCGATGGGCACTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGG                             <  SRR4302532.5322470/94‑1 (MQ=60)
                                                                  cttgggGGCGGTTCTGTCGATGGGCGCTTCTTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAG                           <  SRR4302532.4688364/88‑1 (MQ=60)
                                                                   ATTGCGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGA                          >  SRR4302532.1617737/1‑94 (MQ=60)
                                                                    TTGCGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAA                         <  SRR4302532.1966353/94‑1 (MQ=60)
                                                                       CGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCT                      <  SRR4302532.1651577/94‑1 (MQ=60)
                                                                       CGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCT                      <  SRR4302532.3756448/94‑1 (MQ=60)
                                                                         GCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCG                    <  SRR4302532.2517342/94‑1 (MQ=60)
                                                                         GCGGGTCTGTCGATGGGCACTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCG                    <  SRR4302532.5896880/94‑1 (MQ=60)
                                                                          GGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGG                   <  SRR4302532.4601093/94‑1 (MQ=60)
                                                                          CGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGG                   >  SRR4302532.112016/1‑94 (MQ=60)
                                                                          CGGGTCTGTCGATGGGCACTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGG                   >  SRR4302532.5441582/1‑94 (MQ=60)
                                                                           GGGTGTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGT                  <  SRR4302532.1429017/94‑1 (MQ=60)
                                                                            GGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTT                 <  SRR4302532.2055971/94‑1 (MQ=60)
                                                                              TCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTAT               <  SRR4302532.5314917/94‑1 (MQ=60)
                                                                              TCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTAT               <  SRR4302532.2888137/94‑1 (MQ=60)
                                                                               CTGTCGATGGGCACTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATA              <  SRR4302532.2250225/94‑1 (MQ=60)
                                                                                TGTCGATGGGCACTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATAC             >  SRR4302532.4117861/1‑94 (MQ=60)
                                                                                   CGATGGGCACTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTT          <  SRR4302532.4751823/94‑1 (MQ=60)
                                                                                    GATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTT         <  SRR4302532.1814530/94‑1 (MQ=60)
                                                                                      TGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGG       <  SRR4302532.4168413/94‑1 (MQ=60)
                                                                                      TGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGG       <  SRR4302532.1346965/94‑1 (MQ=60)
                                                                                       GGGCACTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGT      <  SRR4302532.4114518/94‑1 (MQ=60)
                                                                                        GGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTT     >  SRR4302532.434317/1‑94 (MQ=60)
                                                                                        GGCACTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTT     >  SRR4302532.4204198/1‑94 (MQ=60)
                                                                                         GCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTT    <  SRR4302532.2515195/94‑1 (MQ=60)
                                                                                          CGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGCATCTCGGTTATACCTTTGGTTTT   >  SRR4302532.4364222/1‑94 (MQ=60)
                                                                                          CGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTT   >  SRR4302532.508256/1‑94 (MQ=60)
                                                                                          CACTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTT   <  SRR4302532.1253344/94‑1 (MQ=60)
                                                                                           GCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTA  >  SRR4302532.4548169/1‑94 (MQ=60)
                                                                                           |                                                                                             
TGAGCATATCCGCCAGGATGGTGAAAAAGAGCTGGAACGCGACGCAATGGCGCTACTGTGGTCAGCCATTGCGGCGGGTCTGTCGATGGGCGCTTCGTTACTGGCAAAAGGGATATTTCAAGTCGAACTGGAAGGTGTGCCGGGCAGCTTCTTGCTGGAGAATCTCGGTTATACCTTTGGTTTTA  >  NC_000913/2463443‑2463627

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑