Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CGCATAAAGATCTACCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTAAGCCTGAAATTCTTCAGTTG  >  NC_000913/2485731‑2485915
                                                                                           |                                                                                             
CGCATAAAGATCTACCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAA                                                                                             >  SRR4302532.3279298/1‑94 (MQ=60)
CGCATAAAGATCTACCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAA                                                                                             >  SRR4302532.4955112/1‑94 (MQ=60)
 GCATAAAGATCTACCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAAC                                                                                            >  SRR4302532.5172784/1‑94 (MQ=60)
 GCATAAAGATCTACCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAAC                                                                                            <  SRR4302532.1184581/94‑1 (MQ=60)
 GCATAAAGATCTACCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAAC                                                                                            >  SRR4302532.125008/1‑94 (MQ=60)
  CATAAAGATCTACCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACA                                                                                           <  SRR4302532.913576/94‑1 (MQ=60)
    TAAAGATCTCCCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATC                                                                                         <  SRR4302532.4171520/94‑1 (MQ=60)
    TAAAGATCTACCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACTGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTCACATC                                                                                         >  SRR4302532.5888896/1‑94 (MQ=60)
     AAAGATCTACCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCC                                                                                        <  SRR4302532.2489631/94‑1 (MQ=60)
     AAAGATCTACCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCC                                                                                        <  SRR4302532.1494107/94‑1 (MQ=60)
      AAGATCTACCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCT                                                                                       <  SRR4302532.862424/94‑1 (MQ=60)
      AAGATCTACCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCT                                                                                       <  SRR4302532.862423/94‑1 (MQ=60)
      AAGATCTACCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCT                                                                                       <  SRR4302532.444420/94‑1 (MQ=60)
       AGATCTACCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTG                                                                                      <  SRR4302532.3044400/94‑1 (MQ=60)
       AGATCTACCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTG                                                                                      <  SRR4302532.5091699/94‑1 (MQ=60)
       AGATCTACCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTG                                                                                      <  SRR4302532.4005897/94‑1 (MQ=60)
        GATCTACCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGA                                                                                     >  SRR4302532.5434889/1‑94 (MQ=60)
         ATCTACCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAA                                                                                    >  SRR4302532.648523/1‑94 (MQ=60)
         ATCTACCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAA                                                                                    <  SRR4302532.6253999/94‑1 (MQ=60)
         ATCTACCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAA                                                                                    <  SRR4302532.2907881/94‑1 (MQ=60)
           CTACCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATT                                                                                  <  SRR4302532.3860251/94‑1 (MQ=60)
           CTACCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATT                                                                                  <  SRR4302532.961723/94‑1 (MQ=60)
           CTACCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATT                                                                                  >  SRR4302532.3799200/1‑94 (MQ=60)
            TACCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTT                                                                                 <  SRR4302532.2417075/94‑1 (MQ=60)
             ACCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTG                                                                                >  SRR4302532.255669/1‑94 (MQ=60)
             ACCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTG                                                                                <  SRR4302532.5446417/94‑1 (MQ=60)
              CCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGC                                                                               >  SRR4302532.4387580/1‑94 (MQ=60)
              CCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGC                                                                               >  SRR4302532.3225142/1‑94 (MQ=60)
              CCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGAGCGGCTAACATCCTGAATTTGC                                                                               >  SRR4302532.4387579/1‑94 (MQ=60)
                CGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAA                                                                             >  SRR4302532.1012794/1‑94 (MQ=60)
                CGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAA                                                                             >  SRR4302532.6132053/1‑94 (MQ=60)
                CGCTGCGTGTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAA                                                                             <  SRR4302532.75439/94‑1 (MQ=60)
                  CTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCGATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAA                                                                           <  SRR4302532.36120/94‑1 (MQ=60)
                   TGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAG                                                                          >  SRR4302532.142473/1‑94 (MQ=60)
                    GCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGT                                                                         <  SRR4302532.6169855/94‑1 (MQ=60)
                      GTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTG                                                                       >  SRR4302532.6230241/1‑94 (MQ=60)
                      GATTCAAGGACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCCCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTG                                                                       <  SRR4302532.1571347/94‑1 (MQ=60)
                       TTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGA                                                                      <  SRR4302532.3049857/94‑1 (MQ=60)
                       TTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGA                                                                      <  SRR4302532.2765886/94‑1 (MQ=60)
                        TTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGAT                                                                     >  SRR4302532.2207197/1‑94 (MQ=60)
                        TTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGAT                                                                     >  SRR4302532.2207198/1‑94 (MQ=60)
                        TTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGAT                                                                     >  SRR4302532.155422/1‑94 (MQ=60)
                        TTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGAT                                                                     <  SRR4302532.672250/94‑1 (MQ=60)
                        TTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCACATCCACGGTGCGGCCAACATCCTGACTTTGCAAACGATGAT                                                                     >  SRR4302532.155421/1‑94 (MQ=60)
                         TCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATT                                                                    <  SRR4302532.5719600/94‑1 (MQ=60)
                          CAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTA                                                                   <  SRR4302532.552643/94‑1 (MQ=60)
                          CAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTA                                                                   <  SRR4302532.1637451/94‑1 (MQ=60)
                          CAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTA                                                                   >  SRR4302532.4102028/1‑94 (MQ=60)
                          CAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTA                                                                   >  SRR4302532.2251404/1‑94 (MQ=60)
                            AGCACTAGAAGCGGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAAT                                                                 <  SRR4302532.2724260/94‑1 (MQ=60)
                              CACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATAT                                                               <  SRR4302532.3789745/94‑1 (MQ=60)
                              CACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATAT                                                               >  SRR4302532.5543698/1‑94 (MQ=60)
                              CACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATAT                                                               <  SRR4302532.3322227/94‑1 (MQ=60)
                                CTAGAAGCTGGCGATAACAGATCTTTCCATCAGTGTATTCATCGCATCCCCGGTGCGGCTAGTATCCTGAATTTGCAAAAGTTGATTAATATTA                                                             <  SRR4302532.5237404/94‑1 (MQ=60)
                                CTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTA                                                             <  SRR4302532.2855118/94‑1 (MQ=60)
                                 TAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAG                                                            <  SRR4302532.4676245/94‑1 (MQ=60)
                                  AGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGC                                                           >  SRR4302532.486700/1‑94 (MQ=60)
                                   GAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCC                                                          <  SRR4302532.2161549/94‑1 (MQ=60)
                                   GAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCC                                                          <  SRR4302532.3656694/94‑1 (MQ=60)
                                   GAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCC                                                          <  SRR4302532.1094093/94‑1 (MQ=60)
                                    AAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCA                                                         <  SRR4302532.2049339/94‑1 (MQ=60)
                                      GCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATC                                                       <  SRR4302532.1211319/94‑1 (MQ=60)
                                      GCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATC                                                       <  SRR4302532.3711232/94‑1 (MQ=60)
                                       CTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCA                                                      <  SRR4302532.6101464/94‑1 (MQ=60)
                                        TGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAG                                                     >  SRR4302532.5692817/1‑94 (MQ=60)
                                         GGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGT                                                    >  SRR4302532.2584434/1‑94 (MQ=60)
                                           CGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTA                                                  <  SRR4302532.6346151/94‑1 (MQ=60)
                                           CGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTA                                                  <  SRR4302532.1250216/94‑1 (MQ=60)
                                           CGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTA                                                  <  SRR4302532.99678/94‑1 (MQ=60)
                                           CGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTA                                                  <  SRR4302532.3650580/94‑1 (MQ=60)
                                            GATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAG                                                 <  SRR4302532.5268214/94‑1 (MQ=60)
                                            GATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAG                                                 <  SRR4302532.4047439/94‑1 (MQ=60)
                                            GATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAG                                                 <  SRR4302532.3076732/94‑1 (MQ=60)
                                            GATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAG                                                 <  SRR4302532.4745373/94‑1 (MQ=60)
                                             ATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGA                                                <  SRR4302532.1323980/94‑1 (MQ=60)
                                              TAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAA                                               <  SRR4302532.1055689/94‑1 (MQ=60)
                                               AACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAA                                              <  SRR4302532.4655978/94‑1 (MQ=60)
                                                ACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAAT                                             <  SRR4302532.603990/94‑1 (MQ=60)
                                                ACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAAT                                             <  SRR4302532.4559679/94‑1 (MQ=60)
                                                 CAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTCGCAAAAGTTGATTAATATTACCCATCAGTTAGAAATA                                            <  SRR4302532.6098686/94‑1 (MQ=60)
                                                  AGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAA                                           >  SRR4302532.4214289/1‑94 (MQ=60)
                                                  AGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAA                                           >  SRR4302532.3960811/1‑94 (MQ=60)
                                                  AGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAA                                           >  SRR4302532.1911077/1‑94 (MQ=60)
                                                   GAGCTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCTTCAGTTAGAAATAAC                                          <  SRR4302532.3453269/94‑1 (MQ=60)
                                                   GAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAAC                                          <  SRR4302532.106138/94‑1 (MQ=60)
                                                     ACTTTCAATCAGAGTATTCATCGCATGCACGGTGCGGCTATCATCCTGAATTTGCAAAAGTCGATAACTATTAGCCATaacttataaatcacgg                                        <  SRR4302532.4029457/94‑17 (MQ=47)
                                                      CTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACC                                       <  SRR4302532.2478556/94‑1 (MQ=60)
                                                      CTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACC                                       >  SRR4302532.5631043/1‑94 (MQ=60)
                                                       TTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCT                                      <  SRR4302532.3312477/94‑1 (MQ=60)
                                                          CCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTT                                   <  SRR4302532.44212/94‑1 (MQ=60)
                                                          CCATCAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTT                                   <  SRR4302532.3603975/94‑1 (MQ=60)
                                                           CATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTT                                  >  SRR4302532.2678767/1‑94 (MQ=60)
                                                              CAGTGTATTTATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACGCCTGTTTCAG                               <  SRR4302532.1590135/94‑1 (MQ=60)
                                                              CAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAG                               <  SRR4302532.52074/94‑1 (MQ=60)
                                                              CAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAG                               >  SRR4302532.1496019/1‑94 (MQ=60)
                                                              CAGTGTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAG                               >  SRR4302532.1818436/1‑94 (MQ=60)
                                                                GTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGAT                             >  SRR4302532.4014339/1‑94 (MQ=60)
                                                                GTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGAT                             <  SRR4302532.4577259/94‑1 (MQ=60)
                                                                  GTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGA                           <  SRR4302532.64420/94‑1 (MQ=60)
                                                                  GTATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGA                           >  SRR4302532.2110567/1‑94 (MQ=60)
                                                                    ATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACA                         <  SRR4302532.4378665/94‑1 (MQ=60)
                                                                    ATTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACA                         >  SRR4302532.2479028/1‑94 (MQ=60)
                                                                     TTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAG                        >  SRR4302532.6069573/1‑94 (MQ=60)
                                                                     TTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAG                        >  SRR4302532.4032795/1‑94 (MQ=60)
                                                                     TTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAG                        >  SRR4302532.490014/1‑94 (MQ=60)
                                                                     TTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAG                        <  SRR4302532.5884057/94‑1 (MQ=60)
                                                                     TTCATCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAG                        <  SRR4302532.3640228/94‑1 (MQ=60)
                                                                      TCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGT                       >  SRR4302532.4008716/1‑94 (MQ=60)
                                                                       CATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTA                      <  SRR4302532.517606/94‑1 (MQ=60)
                                                                       CATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTA                      <  SRR4302532.2638417/94‑1 (MQ=60)
                                                                       CATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTA                      <  SRR4302532.3630074/94‑1 (MQ=60)
                                                                        ATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTAA                     <  SRR4302532.4372010/94‑1 (MQ=60)
                                                                         TCGCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTAAG                    >  SRR4302532.1866230/1‑94 (MQ=60)
                                                                          CGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATTACAGTAAGC                   <  SRR4302532.821027/94‑1 (MQ=60)
                                                                          CGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTAAGC                   >  SRR4302532.2773109/1‑94 (MQ=60)
                                                                           GCATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTAAGCC                  >  SRR4302532.3717723/1‑94 (MQ=60)
                                                                            CATCCACGGTGCGTCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTAAGCCT                 <  SRR4302532.4253309/94‑1 (MQ=60)
                                                                            CATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTAAGCCT                 <  SRR4302532.1309067/94‑1 (MQ=60)
                                                                             ATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTAAGCCTG                >  SRR4302532.4269051/1‑94 (MQ=60)
                                                                             ATCCACGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTAAGCCTG                >  SRR4302532.3880389/1‑94 (MQ=60)
                                                                              TCCGCGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTAAGCCTGA               <  SRR4302532.2247879/94‑1 (MQ=60)
                                                                                  CGGTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTAAGCCTGAAATT           <  SRR4302532.5547932/94‑1 (MQ=60)
                                                                                   GGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTAAGCCTGAAATTC          >  SRR4302532.5824862/1‑94 (MQ=60)
                                                                                   GGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTAAGCCTGAAATTC          >  SRR4302532.2724275/1‑94 (MQ=60)
                                                                                    GTGCGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTAAGCCTGAAATTCT         <  SRR4302532.5441437/94‑1 (MQ=60)
                                                                                       CGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTAAGCCTGAAATTCTTCA      <  SRR4302532.1390979/94‑1 (MQ=60)
                                                                                       CGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTAAGCCTGAAATTCTTCA      <  SRR4302532.4208720/94‑1 (MQ=60)
                                                                                       CGGCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTAAGCCTGAAATTCTTCA      <  SRR4302532.4612068/94‑1 (MQ=60)
                                                                                        GGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTAAGCCTGAAATTCTTCAG     <  SRR4302532.6344619/94‑1 (MQ=60)
                                                                                        GGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTAAGCCTGAAATTCTTCAG     >  SRR4302532.16531/1‑94 (MQ=60)
                                                                                         GCCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTAAGCCTGAAATTCTTCAGT    <  SRR4302532.3722590/94‑1 (MQ=60)
                                                                                          CTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTAAGCCTGAAATTCTTCAGTT   <  SRR4302532.2974710/94‑1 (MQ=60)
                                                                                          CCAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTAAGCCTGAAATTCTTCAGTT   >  SRR4302532.2173469/1‑94 (MQ=60)
                                                                                           TAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTAAGCCTGAAATTCTTCAGTTG  >  SRR4302532.3707934/1‑94 (MQ=60)
                                                                                           TAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTAAGCCTGAAATTCTTCAGTTG  >  SRR4302532.3089887/1‑94 (MQ=60)
                                                                                           TAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTAAGCCTGAAATTCTTCAGTTG  <  SRR4302532.6052691/94‑1 (MQ=60)
                                                                                           CAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTAAGCCTGAAATTCTTCAGTTG  <  SRR4302532.2014178/94‑1 (MQ=60)
                                                                                           |                                                                                             
CGCATAAAGATCTACCCGCTGCGTTTCAAGCACTAGAAGCTGGCGATAACAGAACTTTCCATCAGTGTATTCATCGCATCCACGGTGCGGCTAACATCCTGAATTTGCAAAAGTTGATTAATATTAGCCATCAGTTAGAAATAACACCTGTTTCAGATGACAGTAAGCCTGAAATTCTTCAGTTG  >  NC_000913/2485731‑2485915

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑