Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGCCAGGCTGTGCTCCAGCCGGGTGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACGCGGCAGCGGATGCGCCGTCAG  >  NC_000913/2502026‑2502208
                                                                                            |                                                                                          
TGCCAGGCTGTGCTCCAGCCGGGTGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTA                                                                                           <  SRR4302532.2167874/94‑1 (MQ=60)
TGCCAGGCTGTGCTCCAGCCGGGTGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTA                                                                                           >  SRR4302532.3542998/1‑94 (MQ=60)
 GCCAGGCTGTGCTCCAGCCGGGTGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCAC                                                                                          <  SRR4302532.6276373/94‑1 (MQ=60)
  CCAGGCTGTGCTCCAGCCGGGTGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACC                                                                                         >  SRR4302532.2008777/1‑94 (MQ=60)
     GGCTGTGCTCCAGCCGGGTGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCAC                                                                                      <  SRR4302532.1229459/94‑1 (MQ=60)
     GGCTGTGCTCCAGCCGGGTGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCAC                                                                                      <  SRR4302532.2125030/94‑1 (MQ=60)
        TGTGCTCCAGCCGGGTGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCC                                                                                   >  SRR4302532.3337479/1‑94 (MQ=60)
           GCTCCAGCCGGGTGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGAC                                                                                <  SRR4302532.3651590/94‑1 (MQ=60)
           GCTCCAGCCGGGTGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGAC                                                                                <  SRR4302532.4747834/94‑1 (MQ=60)
           GCTCCAGCCGGGTGGAATCTTGCGCACTGGCGGGGACTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGAC                                                                                >  SRR4302532.5128691/1‑94 (MQ=60)
            CTCCAGCCGGGTGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACG                                                                               <  SRR4302532.1580432/94‑1 (MQ=60)
            CTCCAGCCGGGTGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACG                                                                               >  SRR4302532.525902/1‑94 (MQ=60)
            CTCCAGCCGGGTGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACG                                                                               <  SRR4302532.1101407/94‑1 (MQ=60)
             TCCAGCCGGGTGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGC                                                                              >  SRR4302532.4699374/1‑94 (MQ=60)
             TCCAGCCGGGTGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGC                                                                              >  SRR4302532.4421167/1‑94 (MQ=60)
               CAGCCGGGTGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCG                                                                            <  SRR4302532.3186057/94‑1 (MQ=60)
                AGCCGGGTGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGC                                                                           >  SRR4302532.3788237/1‑94 (MQ=60)
                 GCCGGGTGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCT                                                                          >  SRR4302532.133881/1‑94 (MQ=60)
                  CCGGGTGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTT                                                                         <  SRR4302532.2519768/94‑1 (MQ=60)
                   CGGGTGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTG                                                                        >  SRR4302532.3706056/1‑94 (MQ=60)
                   CGGGTGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTG                                                                        >  SRR4302532.3404459/1‑94 (MQ=60)
                    GGGTGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGCCGCCGCTTGC                                                                       >  SRR4302532.2285723/1‑94 (MQ=60)
                    GGGTGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGC                                                                       <  SRR4302532.5861056/94‑1 (MQ=60)
                     GGTGGAATCTTGCGCACTGGCGGGGGTTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCC                                                                      >  SRR4302532.2359113/1‑94 (MQ=60)
                      GTGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCA                                                                     <  SRR4302532.4028517/94‑1 (MQ=60)
                      GTGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCC                                                                     >  SRR4302532.2039423/1‑94 (MQ=60)
                       TGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGGGGCTGTCGCTTTGTAACAGGGTCAGCGGACCCACGCCGACCGCGCTTGCCAG                                                                    >  SRR4302532.5376844/1‑94 (MQ=60)
                       TGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAG                                                                    >  SRR4302532.5376843/1‑94 (MQ=60)
                       TGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAG                                                                    <  SRR4302532.282534/94‑1 (MQ=60)
                       TGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAG                                                                    >  SRR4302532.3135718/1‑94 (MQ=60)
                          AATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCAC                                                                 >  SRR4302532.3796570/1‑94 (MQ=60)
                          AATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCAC                                                                 >  SRR4302532.2882820/1‑94 (MQ=60)
                          AATCTTGCGCACGGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCAC                                                                 <  SRR4302532.4772844/94‑1 (MQ=60)
                           ATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACA                                                                >  SRR4302532.697409/1‑94 (MQ=60)
                             CTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATT                                                              <  SRR4302532.4993629/94‑1 (MQ=60)
                              TTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTG                                                             <  SRR4302532.1401613/94‑1 (MQ=60)
                              TTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTG                                                             >  SRR4302532.2502437/1‑94 (MQ=60)
                                GCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCC                                                           <  SRR4302532.1207029/94‑1 (MQ=60)
                                GCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCC                                                           <  SRR4302532.1993743/94‑1 (MQ=60)
                                GCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCC                                                           <  SRR4302532.5658533/94‑1 (MQ=60)
                                 CGCACTGGCGGGGATTTCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCG                                                          <  SRR4302532.5327338/94‑1 (MQ=60)
                                   CACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCCGCACATTGCCGTA                                                        >  SRR4302532.3693670/1‑94 (MQ=60)
                                     CTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCTGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACA                                                      >  SRR4302532.5649491/1‑94 (MQ=60)
                                     CTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCTGCTTGCCAGCACATTGCCGTACA                                                      >  SRR4302532.4413486/1‑94 (MQ=60)
                                       GGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGT                                                    <  SRR4302532.4688633/94‑1 (MQ=60)
                                         CGGGGCTTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGGCAGCGCACCCCCGCCGACGCCGCTTGCCAGCACCTTGTCGTACAGTAA                                                  >  SRR4302532.5395942/1‑94 (MQ=60)
                                          GGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAA                                                 <  SRR4302532.1784299/94‑1 (MQ=60)
                                          GGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTACCAGCACATTGCCGTACAGTAAA                                                 >  SRR4302532.4447961/1‑94 (MQ=60)
                                           GGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAAT                                                <  SRR4302532.4369023/94‑1 (MQ=60)
                                           GGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAAT                                                <  SRR4302532.4130597/94‑1 (MQ=60)
                                            GGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATC                                               <  SRR4302532.4734408/94‑1 (MQ=60)
                                             GATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCC                                              <  SRR4302532.5694201/94‑1 (MQ=60)
                                             GATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCC                                              <  SRR4302532.3993863/94‑1 (MQ=60)
                                               TTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGG                                            <  SRR4302532.3247470/94‑1 (MQ=60)
                                                TGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGG                                           <  SRR4302532.4098025/94‑1 (MQ=60)
                                                 GCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGT                                          <  SRR4302532.189049/94‑1 (MQ=60)
                                                  CCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTT                                         <  SRR4302532.1426792/94‑1 (MQ=60)
                                                    CGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAG                                       >  SRR4302532.5173897/1‑94 (MQ=60)
                                                    CGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCAAGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAA                                       >  SRR4302532.946564/1‑94 (MQ=60)
                                                     GATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAG                                      >  SRR4302532.4934075/1‑94 (MQ=60)
                                                     GATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAG                                      >  SRR4302532.5350660/1‑94 (MQ=60)
                                                     GATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAG                                      <  SRR4302532.1199186/94‑1 (MQ=60)
                                                     AATAACTGGCGAGGCTGTCGCTTTGTAACAGGGGCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAG                                      <  SRR4302532.1689132/94‑1 (MQ=60)
                                                        AACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTCAATCCGGGTTAAGGCG                                   >  SRR4302532.2448791/1‑94 (MQ=60)
                                                        AACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCG                                   >  SRR4302532.6248463/1‑94 (MQ=60)
                                                        AACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCG                                   <  SRR4302532.4312253/94‑1 (MQ=60)
                                                         ACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGG                                  >  SRR4302532.5536591/1‑94 (MQ=60)
                                                         ACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGG                                  <  SRR4302532.2995397/94‑1 (MQ=60)
                                                          CTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGC                                 >  SRR4302532.2998580/1‑94 (MQ=60)
                                                           TGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCT                                <  SRR4302532.3482315/94‑1 (MQ=60)
                                                           TGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCT                                <  SRR4302532.2881117/94‑1 (MQ=60)
                                                           TGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCT                                >  SRR4302532.1996046/1‑94 (MQ=60)
                                                           TGTCGAGACTGTCGCTTTGTAACAGGGACAGCGTACACACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCT                                >  SRR4302532.400392/1‑94 (MQ=60)
                                                              CGAGGCTGTCGCTTTGTAGCAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAA                             <  SRR4302532.4169835/94‑1 (MQ=60)
                                                              CGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAA                             >  SRR4302532.5605986/1‑94 (MQ=60)
                                                               GAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAAT                            <  SRR4302532.5217851/94‑1 (MQ=60)
                                                                AGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATG                           <  SRR4302532.3472495/94‑1 (MQ=60)
                                                                AGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATG                           <  SRR4302532.1573024/94‑1 (MQ=60)
                                                                 GGCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGA                          <  SRR4302532.4555091/94‑1 (MQ=60)
                                                                  GCTGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAA                         >  SRR4302532.4051185/1‑94 (MQ=60)
                                                                    TGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACG                       >  SRR4302532.198771/1‑94 (MQ=60)
                                                                    TGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACG                       <  SRR4302532.5024152/94‑1 (MQ=60)
                                                                    TGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACG                       >  SRR4302532.5130903/1‑94 (MQ=60)
                                                                    TGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACG                       >  SRR4302532.4248813/1‑94 (MQ=60)
                                                                    TGTCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACG                       >  SRR4302532.967885/1‑94 (MQ=60)
                                                                      TCGCTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACGCG                     <  SRR4302532.6107072/94‑1 (MQ=60)
                                                                        GCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACGCGGC                   >  SRR4302532.4206716/1‑94 (MQ=60)
                                                                         CTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACGCGGCA                  >  SRR4302532.980266/1‑94 (MQ=60)
                                                                         CTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACGCGGCA                  <  SRR4302532.1835025/94‑1 (MQ=60)
                                                                         CTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACGCGGCA                  >  SRR4302532.3540928/1‑94 (MQ=60)
                                                                         CTTTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACGCGGCA                  >  SRR4302532.1942788/1‑94 (MQ=60)
                                                                         CTTTGTAAAAGGGTCAGCGCACCCTCGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACGCGGCA                  <  SRR4302532.4021992/94‑1 (MQ=60)
                                                                          TTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACGCGGCAG                 <  SRR4302532.2237340/94‑1 (MQ=60)
                                                                          TTCGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACGCGGCAG                 >  SRR4302532.1803351/1‑94 (MQ=60)
                                                                           TTGTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAGATCCGGGTTAAGGCGGCTTAATGAACGCGGCAGC                <  SRR4302532.738625/94‑1 (MQ=60)
                                                                            TGTAACAGGGTCAGCGTACACACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACGAGGCAGCG               >  SRR4302532.5964416/1‑94 (MQ=60)
                                                                             GTAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACGCGGCAGCGG              >  SRR4302532.1462494/1‑94 (MQ=60)
                                                                              TAACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACGCGGCAGCGGA             >  SRR4302532.6065597/1‑94 (MQ=60)
                                                                               AACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACGCGGCAGCGGAT            <  SRR4302532.82015/94‑1 (MQ=60)
                                                                               AACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACGCGGCAGCGGAT            >  SRR4302532.5400018/1‑94 (MQ=60)
                                                                               AACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACGCGGCAGCGGAT            <  SRR4302532.1089574/94‑1 (MQ=60)
                                                                               AACAGGGTCAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGGACAGTAAATCCGGGCTAAGGCGGCTTAATGAACGCGGCAGCGGAG            >  SRR4302532.2447964/1‑94 (MQ=60)
                                                                                ACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACGCGGCAGCGGATG           <  SRR4302532.2497512/94‑1 (MQ=60)
                                                                                 CAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACGCGGCAGCGGATGC          >  SRR4302532.2160717/1‑94 (MQ=60)
                                                                                  AGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACGCGGCAGCGGATGCG         >  SRR4302532.5203467/1‑94 (MQ=60)
                                                                                     GTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACGCGGCAGCGGATGCGCCG      >  SRR4302532.5042782/1‑94 (MQ=60)
                                                                                       CAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACGCGGCAGCGGATGCGCCGTC    <  SRR4302532.1588136/94‑1 (MQ=60)
                                                                                       CAGCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACGCGGCAGCGGATGCGCCGTC    >  SRR4302532.2678692/1‑94 (MQ=60)
                                                                                        AGCGTACCCACGTCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACGCGGCAGCGGATGCGCCGTCA   >  SRR4302532.6271598/1‑94 (MQ=60)
                                                                                        AGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACGCGGCAGCGGATGCGCCGTCA   <  SRR4302532.2547169/94‑1 (MQ=60)
                                                                                        AGCGCACCCACACCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTATTGAACGCTGCAGCGGATGCGCCGTCA   <  SRR4302532.2750425/94‑1 (MQ=60)
                                                                                         GCGCACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACGCGGCAGCGGATGCGCCGTCAG  <  SRR4302532.1651095/94‑1 (MQ=60)
                                                                                            |                                                                                          
TGCCAGGCTGTGCTCCAGCCGGGTGGAATCTTGCGCACTGGCGGGGATTGCCCGATAACTGTCGAGGCTGTCGCTTTGTAACAGGGTCAGCGTACCCACGCCGACGCCGCTTGCCAGCACATTGCCGTACAGTAAATCCGGGTTAAGGCGGCTTAATGAACGCGGCAGCGGATGCGCCGTCAG  >  NC_000913/2502026‑2502208

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑