Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTGATCACCGCTACGCTTGCGTACCTGATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTTTATTCCTGTTTACCTCGCGTT  >  NC_000913/2545485‑2545669
                                                                                           |                                                                                             
CTGATCACCGCTACGCTTGCGTACCTGATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAGTA                                                                                             <  SRR4302532.3019088/94‑1 (MQ=60)
  GATCACCGCTACGCTTGCGTACCTGATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAAT                                                                                           <  SRR4302532.5504817/94‑1 (MQ=60)
   ATCACCGCTACGCTTGCGTACCTGATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAGTAATC                                                                                          >  SRR4302532.209879/1‑94 (MQ=60)
    TCACCGCTACGCTTGCGTACCTGATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAGTAATCC                                                                                         <  SRR4302532.4399007/94‑1 (MQ=60)
        CGCTACGCTTGCGTACCTGATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAGTAATCCGTTC                                                                                     >  SRR4302532.5559020/1‑94 (MQ=60)
         GCTACGCTTGCGTACCTGATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAGTAATCCGTTCG                                                                                    <  SRR4302532.408527/94‑1 (MQ=60)
         GCTACGCTTGCGTACCTGATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCG                                                                                    <  SRR4302532.5628664/94‑1 (MQ=60)
          CTACGCTTGCGTACCTGATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAGTAATCCGTTCGG                                                                                   <  SRR4302532.1560752/94‑1 (MQ=60)
          CTACGCTTGCGTACCTGATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGG                                                                                   <  SRR4302532.4078093/94‑1 (MQ=60)
          CTACGCTTGCGTACCTGATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGG                                                                                   <  SRR4302532.1271259/94‑1 (MQ=60)
             CGCTTGCGTACCTGATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGTACCTGAAAAATAATCCGTTCGGTTG                                                                                >  SRR4302532.2667469/1‑94 (MQ=60)
             CGCTTGCGTACCTGATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAGTAATCCGTTCGGTTG                                                                                >  SRR4302532.3970595/1‑94 (MQ=60)
             CGCTTGCGTACCTGATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTG                                                                                >  SRR4302532.5260817/1‑94 (MQ=60)
               CTTGCGTACCTGATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTG                                                                              <  SRR4302532.5175797/94‑1 (MQ=60)
                TTGCGTACCTGATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAGTAATCCGTTCGGTTGTGC                                                                             <  SRR4302532.5452746/94‑1 (MQ=60)
                 TGCGTACCTGATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCG                                                                            >  SRR4302532.2668982/1‑94 (MQ=60)
                 TGCGTACCTGATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCG                                                                            <  SRR4302532.2375646/94‑1 (MQ=60)
                 TGCGTACCTGATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCG                                                                            <  SRR4302532.1227389/94‑1 (MQ=60)
                 TGCGTACCTGATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCG                                                                            <  SRR4302532.5861199/94‑1 (MQ=60)
                  GCGTACCTGATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAGTAATCCGTTCGGTTGTGCGG                                                                           <  SRR4302532.1761314/94‑1 (MQ=60)
                    GTACCTGATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTT                                                                         >  SRR4302532.2991932/1‑94 (MQ=60)
                      TCCTGATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTT                                                                       <  SRR4302532.1291405/94‑1 (MQ=60)
                       CCTGATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAGTAATCCGTTCGGTTGTGCGGTTTTA                                                                      <  SRR4302532.4304279/94‑1 (MQ=60)
                       CCTGATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTA                                                                      >  SRR4302532.4653711/1‑94 (MQ=60)
                        CTGATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAG                                                                     >  SRR4302532.5981465/1‑94 (MQ=60)
                        CTGATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAG                                                                     >  SRR4302532.6261606/1‑94 (MQ=60)
                          GATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGGATGTCATGGCTGTTTATGCACCTGAACAGTAATCAGTTCGGGTGTGCGGTTTTAGCC                                                                   >  SRR4302532.206664/1‑94 (MQ=60)
                           ATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCG                                                                  >  SRR4302532.755717/1‑94 (MQ=60)
                           ATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCG                                                                  >  SRR4302532.2908473/1‑94 (MQ=60)
                            TCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGG                                                                 <  SRR4302532.1234494/94‑1 (MQ=60)
                              ATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAGTAATCCATTCGGTTGTGCGGTTTTAGCCGGGC                                                               >  SRR4302532.4065729/1‑94 (MQ=60)
                              ATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGC                                                               >  SRR4302532.445447/1‑94 (MQ=60)
                               TTGTGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCT                                                              <  SRR4302532.3150701/94‑1 (MQ=60)
                               TTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCT                                                              <  SRR4302532.4816632/94‑1 (MQ=60)
                                  TGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTT                                                           <  SRR4302532.1549535/94‑1 (MQ=60)
                                    CCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAGTAATCCGTTCGGTTGGGCGGTTTTAGCCGGGCTGTTCC                                                         >  SRR4302532.3216181/1‑94 (MQ=60)
                                     CGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCT                                                        >  SRR4302532.658322/1‑94 (MQ=60)
                                     CGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGAACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCCGTTCCT                                                        >  SRR4302532.4208184/1‑94 (MQ=60)
                                      GCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTG                                                       <  SRR4302532.2049255/94‑1 (MQ=60)
                                      GCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTG                                                       >  SRR4302532.3368482/1‑94 (MQ=60)
                                      GCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTG                                                       <  SRR4302532.1620156/94‑1 (MQ=60)
                                      GCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTG                                                       <  SRR4302532.3784233/94‑1 (MQ=60)
                                       CTGGGTGGCTGGTTATTCGAAGGGATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTtctgt                                                      >  SRR4302532.1985392/1‑89 (MQ=60)
                                        TGGGTGGCTGTTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGAT                                                     <  SRR4302532.3834600/94‑1 (MQ=60)
                                        TGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGAT                                                     >  SRR4302532.4664425/1‑94 (MQ=60)
                                         tgtttGCTGGTTATTCGAAGATATGTCAGGGCTGTTTAGTCACCTGAACAATAAGCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATC                                                    <  SRR4302532.3534479/89‑1 (MQ=60)
                                         GGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATC                                                    >  SRR4302532.4422266/1‑94 (MQ=60)
                                          GGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCG                                                   <  SRR4302532.3584391/94‑1 (MQ=60)
                                          GGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCG                                                   <  SRR4302532.2280196/94‑1 (MQ=60)
                                          GGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCG                                                   <  SRR4302532.827046/94‑1 (MQ=60)
                                             GGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCG                                                >  SRR4302532.3340266/1‑94 (MQ=60)
                                             GGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCG                                                >  SRR4302532.5695397/1‑94 (MQ=60)
                                             GGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCG                                                >  SRR4302532.1896554/1‑94 (MQ=60)
                                               CTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTG                                              >  SRR4302532.1233736/1‑94 (MQ=60)
                                                TGGTTATTCGAAGGTATGTCATGGCTTTTTACGCACCTGAAAAGTAATCCGTTCGGGTGGGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGG                                             >  SRR4302532.2540811/1‑94 (MQ=60)
                                                TGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGG                                             >  SRR4302532.2540810/1‑94 (MQ=60)
                                                TGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGG                                             >  SRR4302532.3129816/1‑94 (MQ=60)
                                                TGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGG                                             >  SRR4302532.5287450/1‑94 (MQ=60)
                                                  GTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTA                                           >  SRR4302532.3364843/1‑94 (MQ=60)
                                                  GTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTA                                           <  SRR4302532.970106/94‑1 (MQ=60)
                                                   TTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTAT                                          <  SRR4302532.5852623/94‑1 (MQ=60)
                                                   TTATTCGAAGGTATGTCATGGCTGTTTATGCACCCGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTAT                                          >  SRR4302532.4913711/1‑94 (MQ=60)
                                                    TATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATT                                         <  SRR4302532.4292495/94‑1 (MQ=60)
                                                     ATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTT                                        <  SRR4302532.4690053/94‑1 (MQ=60)
                                                     ATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTT                                        <  SRR4302532.1283695/94‑1 (MQ=60)
                                                      TTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTG                                       <  SRR4302532.2362252/94‑1 (MQ=60)
                                                      TTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTG                                       <  SRR4302532.355045/94‑1 (MQ=60)
                                                       TCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGG                                      <  SRR4302532.272155/94‑1 (MQ=60)
                                                          AAGGTATGTTATGGCTGTTTATGCAGCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGT                                   <  SRR4302532.1772956/94‑1 (MQ=60)
                                                          AAGGTATGTCATGGCTGTTTATGCACCTGAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGT                                   <  SRR4302532.1268385/94‑1 (MQ=60)
                                                           AGGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTAGTATTTGGCGTG                                  <  SRR4302532.48702/94‑1 (MQ=60)
                                                            GGTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGC                                 >  SRR4302532.1353517/1‑94 (MQ=60)
                                                             GTATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCA                                >  SRR4302532.2790349/1‑94 (MQ=60)
                                                              TATGTCATGGCTGTTTATGCACCTGAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCAT                               <  SRR4302532.3180075/94‑1 (MQ=60)
                                                              TATGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCAT                               <  SRR4302532.2073932/94‑1 (MQ=60)
                                                                TGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCA                             <  SRR4302532.3401629/94‑1 (MQ=60)
                                                                TGTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCA                             <  SRR4302532.6162243/94‑1 (MQ=60)
                                                                 GTCATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAG                            <  SRR4302532.300990/94‑1 (MQ=60)
                                                                  TCATGGCTGTTTATGCACCTGAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGG                           <  SRR4302532.3182708/94‑1 (MQ=60)
                                                                   CATGGCTGTTTATGCACCTGAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGG                          <  SRR4302532.2122931/94‑1 (MQ=60)
                                                                   CATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGG                          <  SRR4302532.976273/94‑1 (MQ=60)
                                                                   CATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGG                          >  SRR4302532.2892972/1‑94 (MQ=60)
                                                                   CATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGG                          <  SRR4302532.4158983/94‑1 (MQ=60)
                                                                   CATGGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGG                          >  SRR4302532.3335308/1‑94 (MQ=60)
                                                                    ATGGCTGTTTATGCACCTGAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGC                         >  SRR4302532.182310/1‑94 (MQ=60)
                                                                      tgcttTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTT                       <  SRR4302532.4774460/89‑1 (MQ=60)
                                                                      TGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTTCATCAGGGCTT                       <  SRR4302532.4774459/94‑1 (MQ=60)
                                                                      GGCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTT                       >  SRR4302532.4612875/1‑94 (MQ=60)
                                                                       GCTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTTT                      >  SRR4302532.3692695/1‑94 (MQ=60)
                                                                        CTGTTTATGCACCTGAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTTTA                     <  SRR4302532.3525134/94‑1 (MQ=60)
                                                                        CTGTTTATGCACCTGAACAGTAATCCGTTCGGATGTGCGGGTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTTTA                     >  SRR4302532.2862706/1‑94 (MQ=60)
                                                                        CTGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTTTA                     >  SRR4302532.1409855/1‑94 (MQ=60)
                                                                         TGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTTTAT                    <  SRR4302532.1658850/94‑1 (MQ=60)
                                                                         TGTTTATGCACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTTTAT                    >  SRR4302532.2039279/1‑94 (MQ=60)
                                                                          GTTTATGCACCTGAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTTTATT                   <  SRR4302532.6201173/94‑1 (MQ=60)
                                                                              AGGCACCTGAACAATAATCCGTTCGGCCGTGCGGTTCTAGCCGGGCTGTTCCTGATCGCCGTGGTATGTGGCGAGCATCAGGGCTTCATCCCTG               >  SRR4302532.4934831/1‑94 (MQ=60)
                                                                                GCCCCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTTTATTCCTGTT             <  SRR4302532.2000217/94‑1 (MQ=60)
                                                                                GCACCTGAACAGTAATCCGTTCGGCTGTGCGGTTTTAGCCGGGCTGTTTCTGATCGCCGTGGTATTTGGCGTGCCTCAGGGCTTTATTCCTGTT             >  SRR4302532.4805990/1‑94 (MQ=60)
                                                                                 CACCTGAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTTTATTCCTGTTT            <  SRR4302532.2647909/94‑1 (MQ=60)
                                                                                 CACCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTTTATTCCTGTTT            <  SRR4302532.36076/94‑1 (MQ=60)
                                                                                  ACCTGAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTTTATTCCTGTTTA           >  SRR4302532.2663404/1‑94 (MQ=60)
                                                                                   CCTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTTTATTCCTGTTTAC          >  SRR4302532.2572903/1‑94 (MQ=60)
                                                                                    CTGAACGGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGGATTTGGCGTGTATGAGGGCTTTATTCCTATTTACC         >  SRR4302532.6310837/1‑94 (MQ=60)
                                                                                    CTGAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTTTATTCCTGTTTACC         >  SRR4302532.847584/1‑94 (MQ=60)
                                                                                    CTGAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTTTATTCCTGTTTACC         <  SRR4302532.1518463/94‑1 (MQ=60)
                                                                                    CTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTTTATTCCTGTTTACC         >  SRR4302532.793485/1‑94 (MQ=60)
                                                                                    CTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTTTATTCCTGTTTACC         >  SRR4302532.4231488/1‑94 (MQ=60)
                                                                                    CTGAACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTACTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTTTATTCCTGTTTACC         <  SRR4302532.542983/94‑1 (MQ=60)
                                                                                     TGAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTTTATTCCTGTTTACCT        >  SRR4302532.1395292/1‑94 (MQ=60)
                                                                                      GAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTTTATTCCTGTTTACCTC       >  SRR4302532.1523349/1‑94 (MQ=60)
                                                                                      GAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTTTATTCCTGTTTACCTC       >  SRR4302532.422188/1‑94 (MQ=60)
                                                                                       AACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTTTATTCCTGTTTACCTCG      >  SRR4302532.2362798/1‑94 (MQ=60)
                                                                                       AACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTTTATTCCTGTTTACCTCG      <  SRR4302532.4996230/94‑1 (MQ=60)
                                                                                       AACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTTTATTCCTGTTTACCTCG      <  SRR4302532.174130/94‑1 (MQ=60)
                                                                                        ACAATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTTTATTCCTGTTTACCTCGC     >  SRR4302532.5692600/1‑94 (MQ=60)
                                                                                         CAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTTTATTCCTGTTTACCTCGCG    >  SRR4302532.1218225/1‑94 (MQ=60)
                                                                                         CAATAATCCCTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTTTATTCCTGTTTCCCTCGCG    <  SRR4302532.604997/94‑1 (MQ=60)
                                                                                           ATAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTTTATTCCTGTTTACCTCGCGTT  >  SRR4302532.387704/1‑94 (MQ=60)
                                                                                           |                                                                                             
CTGATCACCGCTACGCTTGCGTACCTGATCATTATGCCGCTGGGTGGCTGGTTATTCGAAGGTATGTCATGGCTGTTTATGCACCTGAACAGTAATCCGTTCGGTTGTGCGGTTTTAGCCGGGCTGTTCCTGATCGCCGTGGTATTTGGCGTGCATCAGGGCTTTATTCCTGTTTACCTCGCGTT  >  NC_000913/2545485‑2545669

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑