Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCCGCACCTGCGCCAACCGCTGCACCAACACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTTTTGCCAGCACCACTTCACGGG  >  NC_000913/2631405‑2631591
                                                                                             |                                                                                             
CCCGCACCTGCGCCAACCGCTGCACCAACACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCA                                                                                               >  SRR4302532.5482959/1‑94 (MQ=60)
CCCGCACCTGCGCCAACCGCTGCACCAACACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCA                                                                                               >  SRR4302532.4329110/1‑94 (MQ=60)
CCCGCACCTGCGCCAACCGCTGCACCAACACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCA                                                                                               >  SRR4302532.4329109/1‑94 (MQ=60)
 CCGCACCTGCGCCAACCGCTGCACCAACACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGC                                                                                              <  SRR4302532.2874205/94‑1 (MQ=60)
 CCGCACCTGCGCCAACCGCTGCACCAACACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGC                                                                                              >  SRR4302532.3290302/1‑94 (MQ=60)
    CACCTGCGCCAACCGCTGCACCAACACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGT                                                                                           >  SRR4302532.5838248/1‑94 (MQ=60)
          CGCCAACCGCTGCACCAACACGCAGGCGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCAT                                                                                     <  SRR4302532.3779408/94‑1 (MQ=60)
          CGCCAACCGCTGCACCAACACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCAT                                                                                     <  SRR4302532.713975/94‑1 (MQ=60)
          CGCCAACCGCTGCACCAACACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCAT                                                                                     <  SRR4302532.1092914/94‑1 (MQ=60)
          CGCCAACCGCTGCACCAACACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCAT                                                                                     <  SRR4302532.5888841/94‑1 (MQ=60)
            CCAACCGCTGCACCAACACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGC                                                                                   <  SRR4302532.3124874/94‑1 (MQ=60)
              AACCGCTGCACCAACACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCG                                                                                 >  SRR4302532.5718924/1‑94 (MQ=60)
                 CGCTGCACCAACACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATC                                                                              >  SRR4302532.3914066/1‑94 (MQ=60)
                 CGCTGCACCAACACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATC                                                                              <  SRR4302532.2191908/94‑1 (MQ=60)
                   CTGCCCCAACACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAG                                                                            <  SRR4302532.1974392/94‑1 (MQ=60)
                     GCACCAACACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGT                                                                          <  SRR4302532.4149316/94‑1 (MQ=60)
                      CACCAACACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGTCGATCAGGTG                                                                         >  SRR4302532.1650613/1‑94 (MQ=60)
                      CACCAACACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTG                                                                         >  SRR4302532.4156404/1‑94 (MQ=60)
                      CACCAACACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTG                                                                         <  SRR4302532.5516004/94‑1 (MQ=60)
                       CCCAACACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGG                                                                        <  SRR4302532.5533624/94‑1 (MQ=60)
                       ACCAACACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGG                                                                        <  SRR4302532.935273/94‑1 (MQ=60)
                       ACCAACACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGG                                                                        <  SRR4302532.1100524/94‑1 (MQ=60)
                       ACCAACACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGG                                                                        <  SRR4302532.3928817/94‑1 (MQ=60)
                       ACCAACACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGG                                                                        <  SRR4302532.6339358/94‑1 (MQ=60)
                           ACACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATT                                                                    <  SRR4302532.5126303/94‑1 (MQ=60)
                           ACACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATT                                                                    >  SRR4302532.5591487/1‑94 (MQ=60)
                           ACACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATT                                                                    <  SRR4302532.2689298/94‑1 (MQ=60)
                            CACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATTC                                                                   >  SRR4302532.4964728/1‑94 (MQ=60)
                             ACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCG                                                                  >  SRR4302532.4560473/1‑94 (MQ=60)
                              CGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGT                                                                 >  SRR4302532.1679363/1‑94 (MQ=60)
                               GCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTC                                                                >  SRR4302532.2775041/1‑94 (MQ=60)
                                GAGACGGCCTTGCTCGTCTTTAAAGGCGTTCGGTTTACGTTTCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTTGAATTCGTCA                                                               <  SRR4302532.4736790/94‑1 (MQ=60)
                                CAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTCA                                                               >  SRR4302532.5607106/1‑94 (MQ=60)
                                 AGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCAT                                                              >  SRR4302532.3355329/1‑94 (MQ=60)
                                 AGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCAT                                                              <  SRR4302532.2213838/94‑1 (MQ=60)
                                  GACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGCTCAGGTGGAATTCGTCATC                                                             >  SRR4302532.1277674/1‑94 (MQ=60)
                                   ACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCA                                                            <  SRR4302532.5254280/94‑1 (MQ=60)
                                    CGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCAA                                                           >  SRR4302532.4098925/1‑94 (MQ=60)
                                       CCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCA                                                        <  SRR4302532.727286/94‑1 (MQ=60)
                                       CCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCA                                                        >  SRR4302532.2192322/1‑94 (MQ=60)
                                       CCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCA                                                        >  SRR4302532.3068518/1‑94 (MQ=60)
                                       CCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCA                                                        >  SRR4302532.5385987/1‑94 (MQ=60)
                                        CTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCAC                                                       >  SRR4302532.6174961/1‑94 (MQ=60)
                                           GCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAG                                                    >  SRR4302532.5506969/1‑94 (MQ=60)
                                           GCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAG                                                    <  SRR4302532.3900519/94‑1 (MQ=60)
                                            CTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGC                                                   >  SRR4302532.945978/1‑94 (MQ=60)
                                            CTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGC                                                   >  SRR4302532.2281626/1‑94 (MQ=60)
                                             gctgCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAATTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCG                                                  <  SRR4302532.5393107/90‑1 (MQ=60)
                                             TCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCG                                                  >  SRR4302532.3196813/1‑94 (MQ=60)
                                             TCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCG                                                  >  SRR4302532.5272883/1‑94 (MQ=60)
                                             TCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCG                                                  >  SRR4302532.1176078/1‑94 (MQ=60)
                                               GTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCCCCAGCGGT                                                >  SRR4302532.6076921/1‑94 (MQ=60)
                                               GTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCT                                                <  SRR4302532.1491852/94‑1 (MQ=60)
                                               GTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCT                                                >  SRR4302532.6191122/1‑94 (MQ=60)
                                                TCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCTGGTGGAATTCGTCATCAACCACCAGCGCTT                                               >  SRR4302532.6216799/1‑94 (MQ=60)
                                                TCTTTACAGGCGTGCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTT                                               <  SRR4302532.2113734/94‑1 (MQ=60)
                                                 CTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTT                                              >  SRR4302532.4000151/1‑94 (MQ=60)
                                                 CTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTT                                              <  SRR4302532.5443008/94‑1 (MQ=60)
                                                   TTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCAAACACCAGCGCTTTTT                                            >  SRR4302532.5291091/1‑94 (MQ=60)
                                                      CAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAA                                         >  SRR4302532.988574/1‑94 (MQ=60)
                                                      CAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAA                                         <  SRR4302532.3554378/94‑1 (MQ=60)
                                                      CAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAA                                         >  SRR4302532.6210788/1‑94 (MQ=60)
                                                        GGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACG                                       >  SRR4302532.154748/1‑94 (MQ=60)
                                                          CGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCG                                     <  SRR4302532.1583141/94‑1 (MQ=60)
                                                          CGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCG                                     <  SRR4302532.3109649/94‑1 (MQ=60)
                                                           GTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGT                                    >  SRR4302532.2509636/1‑94 (MQ=60)
                                                           GTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGT                                    >  SRR4302532.2905756/1‑94 (MQ=60)
                                                           GTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGT                                    >  SRR4302532.5371739/1‑94 (MQ=60)
                                                           GTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCAGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGT                                    >  SRR4302532.3344732/1‑94 (MQ=60)
                                                           GGTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCGCAGTGATCATGCCGATCAGGTGGAATTCGGAATCAACCACCAGCGCTTTTTCAACGCGT                                    >  SRR4302532.3344731/1‑94 (MQ=60)
                                                              CGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTT                                 <  SRR4302532.2538373/94‑1 (MQ=60)
                                                               GGTTCACGTTCCGCTTTCTGAAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATGCGTCATCAACCTCCAGCTCTTTTTCAACGCGTTTTT                                <  SRR4302532.3459329/94‑1 (MQ=60)
                                                                GTTTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTC                               >  SRR4302532.2787247/1‑94 (MQ=60)
                                                                GTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTC                               >  SRR4302532.3343767/1‑94 (MQ=60)
                                                                  TTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGT                             >  SRR4302532.5264636/1‑94 (MQ=60)
                                                                  TTACGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGT                             <  SRR4302532.1533388/94‑1 (MQ=60)
                                                                  TTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGT                             <  SRR4302532.5943339/94‑1 (MQ=60)
                                                                  TTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTAATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGT                             >  SRR4302532.435643/1‑94 (MQ=60)
                                                                     CGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCA                          >  SRR4302532.2966031/1‑94 (MQ=60)
                                                                     CGTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCA                          <  SRR4302532.4650545/94‑1 (MQ=60)
                                                                      GTTCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCAT                         <  SRR4302532.3352105/94‑1 (MQ=60)
                                                                        TCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTT                       >  SRR4302532.4261688/1‑94 (MQ=60)
                                                                        TCCGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTT                       <  SRR4302532.1237058/94‑1 (MQ=60)
                                                                        TCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTT                       >  SRR4302532.6265848/1‑94 (MQ=60)
                                                                          CGCTTTCTGGAATTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTTTT                     <  SRR4302532.1241766/94‑1 (MQ=60)
                                                                          CGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTTTT                     <  SRR4302532.1265229/94‑1 (MQ=60)
                                                                          CGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTTTT                     >  SRR4302532.5362837/1‑94 (MQ=60)
                                                                          CGCTTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCACTTTTTCAACGCGTTTTTCGTACATTTTT                     >  SRR4302532.5893339/1‑94 (MQ=60)
                                                                          CGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCCACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTTTT                     >  SRR4302532.125375/1‑94 (MQ=60)
                                                                          CGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTTTT                     <  SRR4302532.73597/94‑1 (MQ=60)
                                                                             TTTCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTTTTGCC                  >  SRR4302532.258814/1‑94 (MQ=60)
                                                                              TTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTTTTGCCA                 <  SRR4302532.3548040/94‑1 (MQ=60)
                                                                               TCTGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTTTTGCCAG                <  SRR4302532.4979598/94‑1 (MQ=60)
                                                                                CTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTTTTGCCAGC               >  SRR4302532.4750805/1‑94 (MQ=60)
                                                                                 TGGAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTTTTGCCAGCA              >  SRR4302532.1366128/1‑94 (MQ=60)
                                                                                  GGAAGTCTTTCACGGTGATCATGCCGATCAGGAGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTTTTGCCAGCAC             >  SRR4302532.4301471/1‑94 (MQ=60)
                                                                                   GAAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGAGCTTTTTCAACGCGTTTTTCGTGCATTTTTGCCAGCACC            >  SRR4302532.6029533/1‑94 (MQ=60)
                                                                                    AAGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTTTTGCCAGCACCA           >  SRR4302532.5000699/1‑94 (MQ=60)
                                                                                    AAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTTTTGCCAGCACCA           >  SRR4302532.2465815/1‑94 (MQ=60)
                                                                                     AGTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTTTTGCCAGCACCAC          <  SRR4302532.542597/94‑1 (MQ=60)
                                                                                      GTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTTTTGCCAGCACCTCT         <  SRR4302532.2182157/94‑1 (MQ=60)
                                                                                      GTCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTTTTGCCAGCACCACT         <  SRR4302532.4275342/94‑1 (MQ=60)
                                                                                      GTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTTTTGCCAGCACCACT         <  SRR4302532.405450/94‑1 (MQ=60)
                                                                                      GTCTTTCACGGTGATCATGCCGATCAGGAGGAATTCGTCATCACCCACCAGCGCTTTTTCAACGCGTTTTTCGTGGATTTTTGCCAGCACCGCT         >  SRR4302532.2012191/1‑94 (MQ=60)
                                                                                       TCTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTTTTGCCAGCACCACTT        >  SRR4302532.3676820/1‑94 (MQ=60)
                                                                                        CTTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTTTTGCCAGCACCACTTC       >  SRR4302532.2149817/1‑94 (MQ=60)
                                                                                        CTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTTTTGCCAGCACCACTTC       <  SRR4302532.5838630/94‑1 (MQ=60)
                                                                                         TTTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGAATTTTTGCCAGCACCACTTCA      >  SRR4302532.4031534/1‑94 (MQ=60)
                                                                                          TTCGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTTTTGCCAGCACCACTTCAC     <  SRR4302532.437754/94‑1 (MQ=60)
                                                                                          TTCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTTTTGCCAGCACCACTTCAC     >  SRR4302532.3667737/1‑94 (MQ=60)
                                                                                           TCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTTTTGCCAGCACCACTTCACG    <  SRR4302532.2772110/94‑1 (MQ=60)
                                                                                            CGCGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTTTTGCCAGCACCACTTCACGG   <  SRR4302532.1184585/94‑1 (MQ=60)
                                                                                             ACGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTTTTGCCAGCACCACTTTACGGG  >  SRR4302532.2121599/1‑94 (MQ=60)
                                                                                             |                                                                                             
CCCGCACCTGCGCCAACCGCTGCACCAACACGCAGACGGCCTTGCTCGTCTTTACAGGCGTTCGGTTTACGTTCCGCTTTCTGGAAGTCTTTCACGGTGATCATGCCGATCAGGTGGAATTCGTCATCAACCACCAGCGCTTTTTCAACGCGTTTTTCGTGCATTTTTGCCAGCACCACTTCACGGG  >  NC_000913/2631405‑2631591

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑