Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTT  >  NC_000913/2753923‑2754109
                                                                                             |                                                                                             
GTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGC                                                                                               >  SRR4302532.216596/1‑94 (MQ=60)
GTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCCCCATCGGTGATTACCAGAGTCATCCGATGAAGT                                                                                               >  SRR4302532.216597/1‑94 (MQ=60)
 TACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCC                                                                                              >  SRR4302532.2362738/1‑94 (MQ=60)
    CGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTA                                                                                           <  SRR4302532.4296286/94‑1 (MQ=60)
     GAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAA                                                                                          >  SRR4302532.2393637/1‑94 (MQ=60)
     GAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAA                                                                                          <  SRR4302532.5340300/94‑1 (MQ=60)
     GAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAA                                                                                          >  SRR4302532.2211290/1‑94 (MQ=60)
      AGGATGTAGGAATTTCGGACGCGTGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAG                                                                                         <  SRR4302532.4411018/94‑1 (MQ=60)
       GGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGA                                                                                        <  SRR4302532.5086856/94‑1 (MQ=60)
       GGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGA                                                                                        <  SRR4302532.2422500/94‑1 (MQ=60)
        GATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAG                                                                                       >  SRR4302532.1411410/1‑94 (MQ=60)
         ATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGC                                                                                      >  SRR4302532.3274824/1‑94 (MQ=60)
         ATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGC                                                                                      <  SRR4302532.5974268/94‑1 (MQ=60)
            TAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCG                                                                                   <  SRR4302532.1765650/94‑1 (MQ=60)
            GAGGAATTTCGGACGCGGGTTCACCTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCG                                                                                   <  SRR4302532.48550/94‑1 (MQ=60)
              GGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCA                                                                                 <  SRR4302532.4346172/94‑1 (MQ=60)
              GGAATTTAGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCA                                                                                 >  SRR4302532.6184650/1‑94 (MQ=60)
               GAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCAC                                                                                <  SRR4302532.2501092/94‑1 (MQ=60)
                AATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCAATGAAGTCCTAAGAGCCCGCACG                                                                               >  SRR4302532.4638279/1‑94 (MQ=60)
                 ATTGCGGACGAGGGTTCACCCCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGG                                                                              <  SRR4302532.4613403/94‑1 (MQ=60)
                      GGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAA                                                                         <  SRR4302532.671981/94‑1 (MQ=60)
                      GGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAA                                                                         >  SRR4302532.869872/1‑94 (MQ=60)
                       GACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAG                                                                        >  SRR4302532.5774785/1‑94 (MQ=60)
                           CGGGTTCACCTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCT                                                                    <  SRR4302532.4334870/94‑1 (MQ=60)
                            GGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTG                                                                   >  SRR4302532.4738861/1‑94 (MQ=60)
                            GGGTTCAACTCCCGCCAGCGGCACCAAAATTCTCCATCGGTGATTACCAGAGTGATCCGATGTAGTCCTAAGAGACCGCAGGGCGCAAGCCCTG                                                                   >  SRR4302532.810397/1‑94 (MQ=60)
                             GGTTCACCACCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGC                                                                  <  SRR4302532.6247648/94‑1 (MQ=60)
                             GGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGC                                                                  >  SRR4302532.3645998/1‑94 (MQ=60)
                             GGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGC                                                                  >  SRR4302532.1118352/1‑94 (MQ=60)
                             GGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGC                                                                  >  SRR4302532.1185037/1‑94 (MQ=60)
                              GTTCACCTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCG                                                                 <  SRR4302532.5133530/94‑1 (MQ=60)
                              GTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCG                                                                 >  SRR4302532.3406400/1‑94 (MQ=60)
                              GTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCG                                                                 <  SRR4302532.360106/94‑1 (MQ=60)
                               TTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGG                                                                <  SRR4302532.3184543/94‑1 (MQ=60)
                                TCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGCGTCATCCGATGAAGCCCTAACAGCCAGCACGGCGCCAGCCCTGCGGG                                                               >  SRR4302532.5391096/1‑94 (MQ=60)
                                TCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGG                                                               <  SRR4302532.5284839/94‑1 (MQ=60)
                                TCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGG                                                               >  SRR4302532.6321512/1‑94 (MQ=60)
                                 CAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGC                                                              >  SRR4302532.3053134/1‑94 (MQ=60)
                                         GCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGT                                                      >  SRR4302532.4861794/1‑94 (MQ=60)
                                         GCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGCCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGT                                                      <  SRR4302532.300535/94‑1 (MQ=60)
                                           CAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGAGC                                                    >  SRR4302532.5090759/1‑94 (MQ=60)
                                           CAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGC                                                    >  SRR4302532.4952888/1‑94 (MQ=60)
                                           CAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGC                                                    >  SRR4302532.6282661/1‑94 (MQ=60)
                                           CAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGC                                                    >  SRR4302532.5875943/1‑94 (MQ=60)
                                            AGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCC                                                   >  SRR4302532.5841072/1‑94 (MQ=60)
                                             GCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCC                                                  <  SRR4302532.799527/94‑1 (MQ=60)
                                              CTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCT                                                 >  SRR4302532.5423277/1‑94 (MQ=60)
                                               TCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTC                                                <  SRR4302532.5133543/94‑1 (MQ=60)
                                               TCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTC                                                >  SRR4302532.880564/1‑94 (MQ=60)
                                               TCCACCAAAATTCTCCATCGGTGATTACCAGAGCCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCCGCAGGCTTTCTTGTGCACTC                                                >  SRR4302532.581553/1‑94 (MQ=60)
                                                   CCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATT                                            <  SRR4302532.4537045/94‑1 (MQ=60)
                                                   CCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATT                                            <  SRR4302532.4322905/94‑1 (MQ=60)
                                                    CAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCATAAGAGCCCGCACGGCGCAAGCCCGGCGGGCTTTTTTGTGCCCTCAATTT                                           <  SRR4302532.3889481/94‑1 (MQ=60)
                                                    CAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTT                                           >  SRR4302532.3455301/1‑94 (MQ=60)
                                                    CAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTT                                           >  SRR4302532.3535101/1‑94 (MQ=60)
                                                    CAAAATTCTCAATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAGGCCCTGCGGGCTTTTTTGTGCCCTCAATTT                                           <  SRR4302532.3889482/94‑1 (MQ=60)
                                                        ATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCC                                       >  SRR4302532.2782341/1‑94 (MQ=60)
                                                          TCTCCATCGGTGATTACCAGAGTGATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCG                                     <  SRR4302532.3604331/94‑1 (MQ=60)
                                                          TCTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCG                                     <  SRR4302532.6321383/94‑1 (MQ=60)
                                                          TCTCCATCGGGGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCG                                     <  SRR4302532.952214/94‑1 (MQ=60)
                                                           CTCCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGC                                    >  SRR4302532.3068521/1‑94 (MQ=60)
                                                            TCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCG                                   >  SRR4302532.929778/1‑94 (MQ=60)
                                                             CCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGA                                  >  SRR4302532.977605/1‑94 (MQ=60)
                                                             CCATCGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCGTTTTTGTGCCCTCAATTTGTCCCGCGA                                  >  SRR4302532.4162328/1‑94 (MQ=60)
                                                              CATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAA                                 >  SRR4302532.2455651/1‑94 (MQ=60)
                                                                 CGGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTC                              >  SRR4302532.5636733/1‑94 (MQ=60)
                                                                  GGTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCC                             <  SRR4302532.1896278/94‑1 (MQ=60)
                                                                   GTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCG                            <  SRR4302532.5018676/94‑1 (MQ=60)
                                                                   GTGATTACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCG                            <  SRR4302532.3132085/94‑1 (MQ=60)
                                                                    TGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGA                           >  SRR4302532.5210538/1‑94 (MQ=60)
                                                                        TACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAG                       <  SRR4302532.732396/94‑1 (MQ=60)
                                                                        TACCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTTCGAAGAG                       <  SRR4302532.3790494/94‑1 (MQ=60)
                                                                          CCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAA                     <  SRR4302532.3422043/94‑1 (MQ=60)
                                                                          CCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCGCTCAATTTGTCCCGCGAAGTCCGAAGAGAA                     >  SRR4302532.1129415/1‑94 (MQ=60)
                                                                          CCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAA                     >  SRR4302532.2673836/1‑94 (MQ=60)
                                                                          CCAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAA                     >  SRR4302532.2673837/1‑94 (MQ=60)
                                                                           CAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAGGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAAC                    <  SRR4302532.95639/94‑1 (MQ=60)
                                                                           CAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAAC                    >  SRR4302532.1278037/1‑94 (MQ=60)
                                                                           CAGAGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAAC                    >  SRR4302532.4675830/1‑94 (MQ=60)
                                                                            AGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGTGAACT                   <  SRR4302532.2402550/94‑1 (MQ=60)
                                                                            AGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACT                   <  SRR4302532.1840420/94‑1 (MQ=60)
                                                                            AGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACT                   >  SRR4302532.5786949/1‑94 (MQ=60)
                                                                              AGTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAA                 >  SRR4302532.2238260/1‑94 (MQ=60)
                                                                               GTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAAT                <  SRR4302532.5409663/94‑1 (MQ=60)
                                                                               GTCATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAAT                <  SRR4302532.3026132/94‑1 (MQ=60)
                                                                               GTCATCCGAAGAAGCTATAAGAGCTCGCTCGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAAT                <  SRR4302532.2906555/94‑1 (MQ=60)
                                                                                 cacgCGATGAAGTCCGAAGACCCCCCACGGCGCAAGCCCGGGGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTA              <  SRR4302532.1443318/90‑1 (MQ=60)
                                                                                 CATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTA              >  SRR4302532.3757154/1‑94 (MQ=60)
                                                                                 CATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCCGCGGGCTTTTTTGTGTCCTCCATTTGTCCCCCGCAGTCCGAAGGGAACTAATTA              >  SRR4302532.6175087/1‑94 (MQ=60)
                                                                                 CATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTA              <  SRR4302532.4543411/94‑1 (MQ=60)
                                                                                  ATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTAA             >  SRR4302532.4906690/1‑94 (MQ=60)
                                                                                  ATCCGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTAA             <  SRR4302532.4503157/94‑1 (MQ=60)
                                                                                   TCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAA            >  SRR4302532.1458546/1‑94 (MQ=60)
                                                                                     CGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATC          <  SRR4302532.2379857/94‑1 (MQ=60)
                                                                                     CGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATC          >  SRR4302532.4336936/1‑94 (MQ=60)
                                                                                     CGATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCAGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATC          >  SRR4302532.4109255/1‑94 (MQ=60)
                                                                                      GATGAAGCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCC         >  SRR4302532.3730724/1‑94 (MQ=60)
                                                                                       ATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCG        <  SRR4302532.5378673/94‑1 (MQ=60)
                                                                                         GAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAA      >  SRR4302532.6238637/1‑94 (MQ=60)
                                                                                           AGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACC    >  SRR4302532.3132202/1‑94 (MQ=60)
                                                                                            GTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCT   <  SRR4302532.4732548/94‑1 (MQ=60)
                                                                                            GCCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCT   <  SRR4302532.262463/94‑1 (MQ=60)
                                                                                             TCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTT  >  SRR4302532.5816907/1‑94 (MQ=60)
                                                                                             CCCTAGGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTT  <  SRR4302532.2812188/94‑1 (MQ=60)
                                                                                             CCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTT  >  SRR4302532.1084634/1‑94 (MQ=60)
                                                                                             CCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTT  <  SRR4302532.2884294/94‑1 (MQ=60)
                                                                                             CCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTT  >  SRR4302532.5447680/1‑94 (MQ=60)
                                                                                             |                                                                                             
GTACCGAGGATGTAGGAATTTCGGACGCGGGTTCAACTCCCGCCAGCTCCACCAAAATTCTCCATCGGTGATTACCAGAGTCATCCGATGAAGTCCTAAGAGCCCGCACGGCGCAAGCCCTGCGGGCTTTTTTGTGCCCTCAATTTGTCCCGCGAAGTCCGAAGAGAACTAATTAAATCCGAACCTT  >  NC_000913/2753923‑2754109

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑