Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTTGCAAAGGTCTTGAGGAAGTTTGTCGCGGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAACCTCATCAAAGCGATCC  >  NC_000913/2759925‑2760110
                                                                                             |                                                                                            
TTTGCAAAGGTCTTGAGGAAGTTTGTCGCGGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCG                                                                                              <  SRR4302532.4596966/94‑1 (MQ=60)
  TGCAAAGGTCTTGAGGAAGTTTGTCGCGGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGC                                                                                            <  SRR4302532.4193759/94‑1 (MQ=60)
    CAAAGGTCTTGAGGAAGTTTGTCGCGGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGCAT                                                                                          >  SRR4302532.298851/1‑94 (MQ=60)
      AAGGTCTTGAGGAAGTTTGTCGCGGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTT                                                                                        <  SRR4302532.4247403/94‑1 (MQ=60)
        GGTCTTGAGGAAGTTTGTCGCGGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCG                                                                                      <  SRR4302532.186932/94‑1 (MQ=60)
        GGTCTTGAGGAAGTTTGTCGCGGAAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCG                                                                                      <  SRR4302532.187152/94‑1 (MQ=60)
         GTCTTGAGGAAGTTTGTCGCGGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGA                                                                                     >  SRR4302532.4435021/1‑94 (MQ=60)
         GTCTTGAGGAAGTTTGTCGCGGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGA                                                                                     >  SRR4302532.3464668/1‑94 (MQ=60)
           CTTGAGGAAGTTTGTCGCGGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAAC                                                                                   <  SRR4302532.4299955/94‑1 (MQ=60)
           CTTGAGGAAGTTTGTCGCGGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAAC                                                                                   >  SRR4302532.2491444/1‑94 (MQ=60)
            TTGAGGAAGTTTGTCGCGGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACT                                                                                  <  SRR4302532.381587/94‑1 (MQ=60)
            TTGAGGAAGTTTGTCGCGGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACT                                                                                  <  SRR4302532.4203952/94‑1 (MQ=60)
            TTGAGGAAGTTTGTCGCGGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACT                                                                                  <  SRR4302532.1509695/94‑1 (MQ=60)
               AGGAAGTTTGTCGCGGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCT                                                                               >  SRR4302532.3931399/1‑94 (MQ=60)
                GGAAGTTTGTCGCGGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTC                                                                              >  SRR4302532.3858038/1‑94 (MQ=60)
                 GAAGTTTGTCGCGGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCG                                                                             >  SRR4302532.2749983/1‑94 (MQ=60)
                  AAGTTTGTCGCGGGAGTCCAGTGAAACACTAACGAGGAAGATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGA                                                                            >  SRR4302532.856406/1‑94 (MQ=60)
                   AGTTTGTCGCGGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGAC                                                                           >  SRR4302532.443512/1‑94 (MQ=60)
                   AGTTTGTCGCGGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGAC                                                                           >  SRR4302532.1442086/1‑94 (MQ=60)
                    GTTTGTCGCGGGAGTCCAGTGAAACACTAACGAGGAAAGTTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACA                                                                          >  SRR4302532.40120/1‑94 (MQ=60)
                     TTTGTCGCGGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACAC                                                                         >  SRR4302532.1368514/1‑94 (MQ=60)
                      TTGTCGCGGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACG                                                                        <  SRR4302532.1091023/94‑1 (MQ=60)
                      TTGTCGCGGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACG                                                                        <  SRR4302532.4758255/94‑1 (MQ=60)
                      TTGTCGCGGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACG                                                                        <  SRR4302532.4383021/94‑1 (MQ=60)
                        GTCGCGGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGA                                                                      <  SRR4302532.1971000/94‑1 (MQ=60)
                        GTCGCGGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGA                                                                      <  SRR4302532.2953077/94‑1 (MQ=60)
                          CGCGGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAG                                                                    <  SRR4302532.1968303/94‑1 (MQ=60)
                          CGCGGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAG                                                                    <  SRR4302532.784275/94‑1 (MQ=60)
                           gcgggttgctagtaaaaaactgacgaggataaccCGTTATCGTGTATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGT                                                                   <  SRR4302532.3269549/60‑1 (MQ=60)
                           GCGGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGT                                                                   >  SRR4302532.693150/1‑94 (MQ=60)
                             GGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTAC                                                                 <  SRR4302532.4518458/94‑1 (MQ=60)
                             GGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTAC                                                                 <  SRR4302532.4467589/94‑1 (MQ=60)
                             GGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTAC                                                                 >  SRR4302532.4921911/1‑94 (MQ=60)
                              GGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACG                                                                <  SRR4302532.2827252/94‑1 (MQ=60)
                                AGTCCAGTGAAACACTAACGAGGCAAATTCGTTATCGTCCATCATCTCGAACATGCTTTTCGGCATTTCGAACTGCTCGACACGGAAGTACGAA                                                              >  SRR4302532.4531527/1‑94 (MQ=60)
                                 GTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAAT                                                             <  SRR4302532.440156/94‑1 (MQ=60)
                                 GTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAAT                                                             <  SRR4302532.3146224/94‑1 (MQ=60)
                                  TCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATG                                                            <  SRR4302532.5078706/94‑1 (MQ=60)
                                  TCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATG                                                            <  SRR4302532.3083004/94‑1 (MQ=60)
                                  TCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGGACGAATG                                                            >  SRR4302532.2986547/1‑94 (MQ=60)
                                   CCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGC                                                           >  SRR4302532.1460945/1‑94 (MQ=60)
                                   CCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGC                                                           >  SRR4302532.1460946/1‑94 (MQ=60)
                                    CAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCT                                                          <  SRR4302532.3443371/94‑1 (MQ=60)
                                     AGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTT                                                         >  SRR4302532.5599451/1‑94 (MQ=60)
                                     AGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTT                                                         >  SRR4302532.594091/1‑94 (MQ=60)
                                      GTGAAACACTACAGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTC                                                        <  SRR4302532.5665883/94‑1 (MQ=60)
                                      GTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTC                                                        <  SRR4302532.181569/94‑1 (MQ=60)
                                      GTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTC                                                        <  SRR4302532.3089176/94‑1 (MQ=60)
                                       TGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCT                                                       >  SRR4302532.4516568/1‑94 (MQ=60)
                                        GAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTT                                                      <  SRR4302532.5980710/94‑1 (MQ=60)
                                           ACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCAC                                                   <  SRR4302532.4352182/94‑1 (MQ=60)
                                           ACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCAC                                                   <  SRR4302532.1413449/94‑1 (MQ=60)
                                              CTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAG                                                <  SRR4302532.4532451/94‑1 (MQ=60)
                                              CTAACGAGGAAAAGTCGTTATCGTCTATCATCTCGAACAGGCTTTGCGTCATTTCGATCTGCTCGACACTGAAGTACGAATGCTTCTTCACAAG                                                <  SRR4302532.784347/94‑1 (MQ=60)
                                               TAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGG                                               >  SRR4302532.1491157/1‑94 (MQ=60)
                                                AACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGT                                              >  SRR4302532.5197564/1‑94 (MQ=60)
                                                AACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGT                                              <  SRR4302532.4352253/94‑1 (MQ=60)
                                                 ACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTC                                             <  SRR4302532.3101109/94‑1 (MQ=60)
                                                 ACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTC                                             <  SRR4302532.1672692/94‑1 (MQ=60)
                                                 ACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTC                                             <  SRR4302532.2439046/94‑1 (MQ=60)
                                                 ACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTC                                             <  SRR4302532.5142323/94‑1 (MQ=60)
                                                  CGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCG                                            <  SRR4302532.617355/94‑1 (MQ=60)
                                                  CGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCG                                            >  SRR4302532.5882037/1‑94 (MQ=60)
                                                   GAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGA                                           >  SRR4302532.650202/1‑94 (MQ=60)
                                                   GAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGA                                           >  SRR4302532.3555366/1‑94 (MQ=60)
                                                    AGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGAT                                          >  SRR4302532.3373589/1‑94 (MQ=60)
                                                    AGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGAT                                          <  SRR4302532.4835273/94‑1 (MQ=60)
                                                     GGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATG                                         >  SRR4302532.5409582/1‑94 (MQ=60)
                                                       AAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGA                                       >  SRR4302532.2259063/1‑94 (MQ=60)
                                                       AAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGA                                       <  SRR4302532.3025583/94‑1 (MQ=60)
                                                        AAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAA                                      >  SRR4302532.3460624/1‑94 (MQ=60)
                                                           TTCGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACA                                   >  SRR4302532.2930696/1‑94 (MQ=60)
                                                           TTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACA                                   >  SRR4302532.55372/1‑94 (MQ=60)
                                                           TTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACA                                   <  SRR4302532.3909585/94‑1 (MQ=60)
                                                             CGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACG                                 >  SRR4302532.5728729/1‑94 (MQ=60)
                                                             CGTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACG                                 <  SRR4302532.3229780/94‑1 (MQ=60)
                                                             CGTTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACG                                 >  SRR4302532.553102/1‑94 (MQ=60)
                                                             CATTAGCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACG                                 <  SRR4302532.2883735/94‑1 (MQ=60)
                                                              GTTATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGG                                >  SRR4302532.2500303/1‑94 (MQ=60)
                                                               TTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGT                               <  SRR4302532.1538571/94‑1 (MQ=60)
                                                                TATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGatagaggaatggttatttaataaggttcttgtaacagaggcg                              >  SRR4302532.1903482/1‑52 (MQ=60)
                                                                TATCGTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTC                              >  SRR4302532.3684753/1‑94 (MQ=60)
                                                                    GTCTATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAAGGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTT                          >  SRR4302532.3409342/1‑94 (MQ=60)
                                                                    GTCCATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTT                          >  SRR4302532.2117830/1‑94 (MQ=60)
                                                                     TCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTT                         >  SRR4302532.4003051/1‑94 (MQ=60)
                                                                      CCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTAT                        <  SRR4302532.3246177/94‑1 (MQ=60)
                                                                       CATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATG                       >  SRR4302532.145834/1‑94 (MQ=60)
                                                                        CTCATCTCGAACATGCTTTGCGGAATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGA                      <  SRR4302532.3631596/94‑1 (MQ=60)
                                                                        ATCATCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGA                      >  SRR4302532.650056/1‑94 (MQ=60)
                                                                        ATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGA                      >  SRR4302532.562823/1‑94 (MQ=60)
                                                                          CATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAAGACGGTGGTTTATGAAA                    >  SRR4302532.2835790/1‑94 (MQ=60)
                                                                           ATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAA                   >  SRR4302532.1236545/1‑94 (MQ=60)
                                                                            TCTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAAC                  <  SRR4302532.4899320/94‑1 (MQ=60)
                                                                            TCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAAC                  <  SRR4302532.3391405/94‑1 (MQ=60)
                                                                            TCTCGAACATGCTTTGCAGCATTGCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGAGGGAAACACGTTCGTTTATGAAAAC                  <  SRR4302532.686006/94‑1 (MQ=60)
                                                                             CTCGAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAACC                 <  SRR4302532.910934/94‑1 (MQ=60)
                                                                             CTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAACC                 >  SRR4302532.1269207/1‑94 (MQ=60)
                                                                                GAACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAACCTCA              <  SRR4302532.1445431/94‑1 (MQ=60)
                                                                                 AACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAACCTCAT             <  SRR4302532.929207/94‑1 (MQ=60)
                                                                                 AACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAACCTCAT             <  SRR4302532.2875405/94‑1 (MQ=60)
                                                                                 AACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAACCTCAT             <  SRR4302532.2930637/94‑1 (MQ=60)
                                                                                  ACATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAACCTCATC            <  SRR4302532.6258606/94‑1 (MQ=60)
                                                                                   CATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAACCTCATCA           >  SRR4302532.1163683/1‑94 (MQ=60)
                                                                                   CATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAACCTCATCA           <  SRR4302532.5249445/94‑1 (MQ=60)
                                                                                   CATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAACCTCATCA           >  SRR4302532.5477672/1‑94 (MQ=60)
                                                                                   CATGCTTTGCAGTATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACAAGGTCGTTTATGAAAACCTCATCA           >  SRR4302532.3616136/1‑94 (MQ=60)
                                                                                   CATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAACCTCATCA           <  SRR4302532.1793427/94‑1 (MQ=60)
                                                                                   CATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAACCTCATCA           >  SRR4302532.3012632/1‑94 (MQ=60)
                                                                                    ATGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAACATCATCAA          >  SRR4302532.3942206/1‑94 (MQ=60)
                                                                                    ATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAACCTCATCAA          >  SRR4302532.209555/1‑94 (MQ=60)
                                                                                     TGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAACCTCATCAAA         >  SRR4302532.4441477/1‑94 (MQ=60)
                                                                                     TGCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAACCTCATCAAA         <  SRR4302532.5111780/94‑1 (MQ=60)
                                                                                     TGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAACCTCATCAAA         <  SRR4302532.3755872/94‑1 (MQ=60)
                                                                                      GCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGACACACGGTCGTTTATGAAAACCTCATCAAAG        <  SRR4302532.4015604/94‑1 (MQ=60)
                                                                                      GCTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAACCTCATCAAAG        <  SRR4302532.2040513/94‑1 (MQ=60)
                                                                                      GCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAACCTCATCAAAG        <  SRR4302532.2705406/94‑1 (MQ=60)
                                                                                       CTTTGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAACCTCATCAAAGC       <  SRR4302532.3744715/94‑1 (MQ=60)
                                                                                          TGCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAACCTCATCAACGCGAT    >  SRR4302532.862978/1‑94 (MQ=60)
                                                                                          TGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAACCTCATCAAAGCGAT    >  SRR4302532.5895164/1‑94 (MQ=60)
                                                                                           GCGGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAACCTCATCAAAGCGATC   >  SRR4302532.5297745/1‑94 (MQ=60)
                                                                                           GCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAACCTCATCAAAGCGATC   >  SRR4302532.3976918/1‑94 (MQ=60)
                                                                                            CAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAACCTCATCAAAGCGATCC  <  SRR4302532.4074182/94‑1 (MQ=60)
                                                                                             |                                                                                            
TTTGCAAAGGTCTTGAGGAAGTTTGTCGCGGGAGTCCAGTGAAACACTAACGAGGAAAATTCGTTATCGTCCATCATCTCGAACATGCTTTGCAGCATTTCGAACTGCTCGACACGGAAGTACGAATGCTTCTTCACAAGGTCGATGGAAACACGGTCGTTTATGAAAACCTCATCAAAGCGATCC  >  NC_000913/2759925‑2760110

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑