Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATTGATGGCATCAACCGCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCT  >  NC_000913/2818582‑2818768
                                                                                             |                                                                                             
ATTGATGGCATCAACCGCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTA                                                                                               <  SRR4302532.4212036/94‑1 (MQ=60)
 TTGATGGCATCAACCGCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTAT                                                                                              <  SRR4302532.1076311/94‑1 (MQ=60)
  TGATGGCATCAACCGCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATC                                                                                             <  SRR4302532.1705516/94‑1 (MQ=60)
   GATGGCATCAACCGCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCA                                                                                            >  SRR4302532.2140373/1‑94 (MQ=60)
     TGGCATCAACCGCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAAC                                                                                          <  SRR4302532.5108042/94‑1 (MQ=60)
      GGCATCAACCGCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACA                                                                                         >  SRR4302532.368378/1‑94 (MQ=60)
      GGCATCAACCGCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACA                                                                                         >  SRR4302532.368377/1‑94 (MQ=60)
      GGCATCAACCGCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACA                                                                                         >  SRR4302532.3412816/1‑94 (MQ=60)
      GGCATCAACCGCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACA                                                                                         <  SRR4302532.3153054/94‑1 (MQ=60)
       GCATCAACCGCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACAC                                                                                        <  SRR4302532.3727815/94‑1 (MQ=60)
       GCATCAACCGCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACAC                                                                                        <  SRR4302532.218134/94‑1 (MQ=60)
       GCATCAACCGCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACAC                                                                                        >  SRR4302532.1642970/1‑94 (MQ=60)
        CATCAACCGCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACG                                                                                       >  SRR4302532.3501116/1‑94 (MQ=60)
        CATCAACCGCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACG                                                                                       >  SRR4302532.3501117/1‑94 (MQ=60)
         ATCAACCGCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGG                                                                                      <  SRR4302532.2005152/94‑1 (MQ=60)
         ATCAACCGCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGG                                                                                      >  SRR4302532.1708855/1‑94 (MQ=60)
         ATCAACCGCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGG                                                                                      >  SRR4302532.2426024/1‑94 (MQ=60)
         ATCAACCGCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGG                                                                                      >  SRR4302532.6108754/1‑94 (MQ=60)
          TCAACCGCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGA                                                                                     >  SRR4302532.1685320/1‑94 (MQ=60)
           CAACCGCTTTGCCATCAACAAACAGCGGAGTCACGTGCCCGGTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGAT                                                                                    <  SRR4302532.4330679/94‑1 (MQ=60)
           CAACCGCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGAT                                                                                    <  SRR4302532.1993868/94‑1 (MQ=60)
           CAACCGCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGAT                                                                                    <  SRR4302532.1993867/94‑1 (MQ=60)
           CAACCGCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGAT                                                                                    >  SRR4302532.3273373/1‑94 (MQ=60)
            CACCGCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATC                                                                                   <  SRR4302532.4351822/94‑1 (MQ=60)
             ACCGCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCA                                                                                  <  SRR4302532.5892345/94‑1 (MQ=60)
              CCGCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCAT                                                                                 <  SRR4302532.3903719/94‑1 (MQ=60)
               CGCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATT                                                                                <  SRR4302532.5744167/94‑1 (MQ=60)
               CGCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATT                                                                                >  SRR4302532.5513484/1‑94 (MQ=60)
                GCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTG                                                                               >  SRR4302532.2695177/1‑94 (MQ=60)
                GCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTG                                                                               >  SRR4302532.3481705/1‑94 (MQ=60)
                 CTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGC                                                                              >  SRR4302532.4869159/1‑94 (MQ=60)
                  TTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCG                                                                             >  SRR4302532.2094237/1‑94 (MQ=60)
                  TTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCG                                                                             >  SRR4302532.1991550/1‑94 (MQ=60)
                    TACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTT                                                                           <  SRR4302532.5010834/94‑1 (MQ=60)
                      CCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGT                                                                         >  SRR4302532.834948/1‑94 (MQ=60)
                      CCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGT                                                                         >  SRR4302532.4224591/1‑94 (MQ=60)
                       CATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTA                                                                        >  SRR4302532.150928/1‑94 (MQ=60)
                        ATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAA                                                                       >  SRR4302532.5488233/1‑94 (MQ=60)
                        ATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAA                                                                       >  SRR4302532.1859155/1‑94 (MQ=60)
                        ATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAA                                                                       >  SRR4302532.6034372/1‑94 (MQ=60)
                         TCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTCAT                                                                      >  SRR4302532.694817/1‑94 (MQ=60)
                         TCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAAT                                                                      <  SRR4302532.2655205/94‑1 (MQ=60)
                         TCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAAT                                                                      >  SRR4302532.4421074/1‑94 (MQ=60)
                         TCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAAT                                                                      <  SRR4302532.5994765/94‑1 (MQ=60)
                         TCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAAT                                                                      <  SRR4302532.5940213/94‑1 (MQ=60)
                         TCAACAAACAGCGCAGTCACTTTGCCGTTCAGGTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCACCACGGATCATTGCGTTGTAAC                                                                      >  SRR4302532.542339/1‑94 (MQ=60)
                          CAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATC                                                                     >  SRR4302532.4814233/1‑94 (MQ=60)
                           AACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCG                                                                    >  SRR4302532.3425222/1‑94 (MQ=60)
                            ACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCGG                                                                   >  SRR4302532.5289602/1‑94 (MQ=60)
                             CAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGC                                                                  <  SRR4302532.2335076/94‑1 (MQ=60)
                             CAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGC                                                                  >  SRR4302532.2631650/1‑94 (MQ=60)
                             CAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGC                                                                  >  SRR4302532.1736547/1‑94 (MQ=60)
                              AAACAGCTCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCA                                                                 <  SRR4302532.3874666/94‑1 (MQ=60)
                              AAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCA                                                                 >  SRR4302532.2745964/1‑94 (MQ=60)
                              AAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCA                                                                 <  SRR4302532.4560987/94‑1 (MQ=60)
                               AACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCAC                                                                <  SRR4302532.1325392/94‑1 (MQ=60)
                               AACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCAC                                                                <  SRR4302532.1325393/94‑1 (MQ=60)
                                 CAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCA                                                              >  SRR4302532.41049/1‑94 (MQ=60)
                                  AGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAA                                                             >  SRR4302532.4219672/1‑94 (MQ=60)
                                    CGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAG                                                           <  SRR4302532.6331108/94‑1 (MQ=60)
                                     GCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGC                                                          >  SRR4302532.5522664/1‑94 (MQ=60)
                                      CAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACCGATCATTGCGTTGTAATCGGCACCAAAGCC                                                         >  SRR4302532.1344304/1‑94 (MQ=60)
                                      CAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAACCTTTAAATTCAGATGCACTGTCAACCCGGATCATTGCGTTGTAATCGGCACCAAAGCC                                                         <  SRR4302532.2041176/94‑1 (MQ=60)
                                       AGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCG                                                        >  SRR4302532.3377035/1‑94 (MQ=60)
                                       AGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCG                                                        >  SRR4302532.1591569/1‑94 (MQ=60)
                                       AGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCG                                                        >  SRR4302532.1703074/1‑94 (MQ=60)
                                        GTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGC                                                       <  SRR4302532.715970/94‑1 (MQ=60)
                                         TCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCT                                                      >  SRR4302532.3366482/1‑94 (MQ=60)
                                          CACTTTGCTGTGCAGTTCCAGGTGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGAATCATTACGTTGTAATCGGCACCAAAGCCGCTG                                                     <  SRR4302532.1186943/94‑1 (MQ=60)
                                           ACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGG                                                    <  SRR4302532.1348737/94‑1 (MQ=60)
                                           ACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGG                                                    >  SRR4302532.3695627/1‑94 (MQ=60)
                                            CTTTGCCGTTCAGTACCAGATGGTCATAGCCTTTAAATTCAGATGCACGGTCAACACGGATCATTGCGTTGTAATCTGCGCCAAAGCCGCTGGC                                                   <  SRR4302532.4117366/94‑1 (MQ=60)
                                             TTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCT                                                  <  SRR4302532.2609557/94‑1 (MQ=60)
                                             TTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCT                                                  >  SRR4302532.2274641/1‑94 (MQ=60)
                                               TGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTC                                                <  SRR4302532.3056307/94‑1 (MQ=60)
                                               TGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTC                                                >  SRR4302532.5878940/1‑94 (MQ=60)
                                               TGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTC                                                <  SRR4302532.5563378/94‑1 (MQ=60)
                                                 CCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGC                                              >  SRR4302532.1838573/1‑94 (MQ=60)
                                                 CCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGC                                              <  SRR4302532.3712050/94‑1 (MQ=60)
                                                  CGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCG                                             <  SRR4302532.590205/94‑1 (MQ=60)
                                                   GTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGC                                            >  SRR4302532.2132218/1‑94 (MQ=60)
                                                   GTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGC                                            >  SRR4302532.5527119/1‑94 (MQ=60)
                                                    TTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCG                                           >  SRR4302532.3670388/1‑94 (MQ=60)
                                                      CAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCG                                         >  SRR4302532.1000759/1‑94 (MQ=60)
                                                       AGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGC                                        >  SRR4302532.2949770/1‑94 (MQ=60)
                                                        GTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTCGCTTCGCGCGCGac                                       >  SRR4302532.143725/1‑92 (MQ=60)
                                                        GTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTTGCGCGCGCG                                       >  SRR4302532.1015913/1‑94 (MQ=60)
                                                          TCCAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGAC                                     <  SRR4302532.2322288/94‑1 (MQ=60)
                                                           CCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACG                                    >  SRR4302532.4974278/1‑94 (MQ=60)
                                                            CAGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGA                                   >  SRR4302532.1351262/1‑94 (MQ=60)
                                                             AGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGAC                                  >  SRR4302532.2401053/1‑94 (MQ=60)
                                                             AGATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGAC                                  <  SRR4302532.2690517/94‑1 (MQ=60)
                                                              GATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACG                                 >  SRR4302532.1866233/1‑94 (MQ=60)
                                                               ATGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGC                                <  SRR4302532.1832598/94‑1 (MQ=60)
                                                                TGGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCT                               <  SRR4302532.42726/94‑1 (MQ=60)
                                                                 GGTCATAGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTG                              <  SRR4302532.6155844/94‑1 (MQ=60)
                                                                   TCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCT                            <  SRR4302532.3021929/94‑1 (MQ=60)
                                                                    CATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTC                           >  SRR4302532.3091390/1‑94 (MQ=60)
                                                                       AGCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTC                        >  SRR4302532.1961968/1‑94 (MQ=60)
                                                                        GCCTTTAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCC                       >  SRR4302532.4645788/1‑94 (MQ=60)
                                                                          CTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCAT                     >  SRR4302532.959076/1‑94 (MQ=60)
                                                                          CTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCAT                     <  SRR4302532.2676884/94‑1 (MQ=60)
                                                                           TTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATT                    >  SRR4302532.2899507/1‑94 (MQ=60)
                                                                             TAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGC                  >  SRR4302532.2396336/1‑94 (MQ=60)
                                                                             TAAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGC                  >  SRR4302532.1873548/1‑94 (MQ=60)
                                                                              AAATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCA                 >  SRR4302532.4866907/1‑94 (MQ=60)
                                                                               AATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAG                <  SRR4302532.1254317/94‑1 (MQ=60)
                                                                               AATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAG                <  SRR4302532.1137256/94‑1 (MQ=60)
                                                                                ATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGC               >  SRR4302532.2213505/1‑94 (MQ=60)
                                                                                ATTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGC               <  SRR4302532.3812214/94‑1 (MQ=60)
                                                                                 TTCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCT              >  SRR4302532.1046712/1‑94 (MQ=60)
                                                                                 TTCAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCT              <  SRR4302532.3946909/94‑1 (MQ=60)
                                                                                  TCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTT             <  SRR4302532.1630575/94‑1 (MQ=60)
                                                                                   CAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTC            >  SRR4302532.3973342/1‑94 (MQ=60)
                                                                                   CAGATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTC            <  SRR4302532.4882344/94‑1 (MQ=60)
                                                                                    AGATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCA           <  SRR4302532.3211787/94‑1 (MQ=60)
                                                                                     GATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCCA          >  SRR4302532.6305336/1‑94 (MQ=60)
                                                                                     GATGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAA          >  SRR4302532.2128001/1‑94 (MQ=60)
                                                                                      ATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAA         >  SRR4302532.4782096/1‑94 (MQ=60)
                                                                                       TGCACTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAA        >  SRR4302532.3669334/1‑94 (MQ=60)
                                                                                        GCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAAC       <  SRR4302532.4332913/94‑1 (MQ=60)
                                                                                         CACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACC      >  SRR4302532.3911733/1‑94 (MQ=60)
                                                                                          ACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCA     >  SRR4302532.2924133/1‑94 (MQ=60)
                                                                                           CTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAG    >  SRR4302532.1677695/1‑94 (MQ=60)
                                                                                           CTATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAG    >  SRR4302532.1677501/1‑94 (MQ=60)
                                                                                            TGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGC   <  SRR4302532.908395/94‑1 (MQ=60)
                                                                                             GTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCT  >  SRR4302532.1291598/1‑94 (MQ=60)
                                                                                             ATCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCT  >  SRR4302532.5450884/1‑94 (MQ=60)
                                                                                             |                                                                                             
ATTGATGGCATCAACCGCTTTACCATCAACAAACAGCGCAGTCACTTTGCCGTTCAGTTCCAGATGGTCATAGCCTTTAAATTCAGATGCACTGTCAACACGGATCATTGCGTTGTAATCGGCACCAAAGCCGCTGGCTTCGCGCGCGCGACGACGCTGCTCTTCCATTGCAGCTTCAAAACCAGCT  >  NC_000913/2818582‑2818768

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑