Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CCGCTTTGGATAAATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATATCGTTAAAAAGATTAAGAAC  >  NC_000913/2892190‑2892374
                                                                                             |                                                                                           
CCGCTTTGGATAAATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCC                                                                                             <  SRR4302532.3081300/94‑1 (MQ=60)
CCGCTTTGGATAAATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCC                                                                                             <  SRR4302532.4094445/94‑1 (MQ=60)
  GCTTTGGATAAATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGC                                                                                           >  SRR4302532.1963027/1‑94 (MQ=60)
   CTTTGGATAAATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAGGATAATGCCAGCCTGCA                                                                                          >  SRR4302532.5293859/1‑94 (MQ=60)
   CTTTGGATAAATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCA                                                                                          >  SRR4302532.2412286/1‑94 (MQ=60)
      TGGATAAATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACT                                                                                       <  SRR4302532.6081397/94‑1 (MQ=60)
      TGGATAAATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACT                                                                                       >  SRR4302532.4074759/1‑94 (MQ=60)
      TGGATAAATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACT                                                                                       <  SRR4302532.3117050/94‑1 (MQ=60)
      TGGATAAAAAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACT                                                                                       <  SRR4302532.3678109/94‑1 (MQ=60)
       GGATAAATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTG                                                                                      >  SRR4302532.613730/1‑94 (MQ=60)
       GGATAAATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTG                                                                                      >  SRR4302532.2363137/1‑94 (MQ=60)
         ATAAATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGC                                                                                    <  SRR4302532.806668/94‑1 (MQ=60)
         ATAAATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGC                                                                                    >  SRR4302532.1897724/1‑94 (MQ=60)
          TAAATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCA                                                                                   >  SRR4302532.2135998/1‑94 (MQ=60)
          TAAATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCA                                                                                   <  SRR4302532.4441440/94‑1 (MQ=60)
          TAAATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCA                                                                                   <  SRR4302532.4254389/94‑1 (MQ=60)
           AAATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAA                                                                                  >  SRR4302532.3258500/1‑94 (MQ=60)
           AAATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAA                                                                                  >  SRR4302532.5201190/1‑94 (MQ=60)
           AAATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAA                                                                                  >  SRR4302532.3553437/1‑94 (MQ=60)
           AAATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAA                                                                                  >  SRR4302532.1162001/1‑94 (MQ=60)
            AATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAAT                                                                                 <  SRR4302532.1159396/94‑1 (MQ=60)
             ATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATC                                                                                >  SRR4302532.3423054/1‑94 (MQ=60)
             ATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATC                                                                                >  SRR4302532.1630465/1‑94 (MQ=60)
              TAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCG                                                                               >  SRR4302532.4405178/1‑94 (MQ=60)
              TAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCG                                                                               >  SRR4302532.351600/1‑94 (MQ=60)
              TAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCG                                                                               >  SRR4302532.5252416/1‑94 (MQ=60)
              TAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCG                                                                               >  SRR4302532.892010/1‑94 (MQ=60)
               AATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGA                                                                              >  SRR4302532.5929417/1‑94 (MQ=60)
                ATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGAT                                                                             <  SRR4302532.5025449/94‑1 (MQ=60)
                  AAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGCTTC                                                                           >  SRR4302532.3225686/1‑94 (MQ=60)
                  AAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTC                                                                           >  SRR4302532.1967688/1‑94 (MQ=60)
                   AGGATAATTTATGCCCCTCTTACCCCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCT                                                                          <  SRR4302532.5252986/94‑1 (MQ=60)
                   AGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCT                                                                          >  SRR4302532.329525/1‑94 (MQ=60)
                   AGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCT                                                                          <  SRR4302532.2887439/94‑1 (MQ=60)
                     GATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGA                                                                        <  SRR4302532.4416845/94‑1 (MQ=60)
                      ATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAA                                                                       <  SRR4302532.4983986/94‑1 (MQ=60)
                      ATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAA                                                                       >  SRR4302532.2825038/1‑94 (MQ=60)
                       TAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAAT                                                                      <  SRR4302532.353512/94‑1 (MQ=60)
                        aatccATGCCCCTCTGACCCCTGCTCCGCCAGAATCCGGTGAGTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATG                                                                     <  SRR4302532.452049/89‑1 (MQ=60)
                        AATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATG                                                                     <  SRR4302532.452050/94‑1 (MQ=60)
                        AATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATG                                                                     <  SRR4302532.3005529/94‑1 (MQ=60)
                        AATTTATCCCCCTCTTACACCGGCCCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATG                                                                     <  SRR4302532.5372802/94‑1 (MQ=60)
                        AAGTTAGGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGGTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATG                                                                     >  SRR4302532.5642757/1‑94 (MQ=60)
                          TTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCC                                                                   >  SRR4302532.4670283/1‑94 (MQ=60)
                            TATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAA                                                                 <  SRR4302532.950077/94‑1 (MQ=60)
                             ATGCCCCTCTTACACCTGCTCCGTCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAAT                                                                <  SRR4302532.4626140/94‑1 (MQ=60)
                             ATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAAT                                                                <  SRR4302532.5792258/94‑1 (MQ=60)
                              TGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATT                                                               <  SRR4302532.5949098/94‑1 (MQ=60)
                               GCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTT                                                              <  SRR4302532.4433580/94‑1 (MQ=60)
                                CCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTA                                                             >  SRR4302532.5536107/1‑94 (MQ=60)
                                 CCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTAT                                                            >  SRR4302532.4774643/1‑94 (MQ=60)
                                 CCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTAT                                                            >  SRR4302532.4918910/1‑94 (MQ=60)
                                   CTCTTACCCCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTT                                                          <  SRR4302532.3331774/94‑1 (MQ=60)
                                   CTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTT                                                          <  SRR4302532.3322566/94‑1 (MQ=60)
                                   CTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTT                                                          >  SRR4302532.2443427/1‑94 (MQ=60)
                                   CTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTT                                                          <  SRR4302532.966540/94‑1 (MQ=60)
                                   CTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTT                                                          >  SRR4302532.385933/1‑94 (MQ=60)
                                   CTCCTTCACCTGCTTCGCCCGAATCCGGTGATTCATTCCGGTAAAGATAATGCCAGCCCGCAACTTGCAATCGATTCTGAATGCCAATTTATTT                                                          <  SRR4302532.1865170/94‑1 (MQ=50)
                                      TTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCG                                                       >  SRR4302532.3084239/1‑94 (MQ=60)
                                      TTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCG                                                       >  SRR4302532.3472379/1‑94 (MQ=60)
                                       TACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGT                                                      >  SRR4302532.2864267/1‑94 (MQ=60)
                                        TCACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAAGCGATTCTGAATGCCAATTTATTTCCGTG                                                     <  SRR4302532.4529832/94‑1 (MQ=60)
                                        ACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTG                                                     >  SRR4302532.5055904/1‑94 (MQ=60)
                                        ACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTG                                                     >  SRR4302532.114740/1‑94 (MQ=60)
                                         CACCTGCTCCGCCAGAATCCGGCGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGT                                                    >  SRR4302532.4342525/1‑94 (MQ=60)
                                          ACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTT                                                   >  SRR4302532.5256659/1‑94 (MQ=60)
                                           CCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTG                                                  <  SRR4302532.726313/94‑1 (MQ=60)
                                            CTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGT                                                 >  SRR4302532.2185905/1‑94 (MQ=60)
                                              GCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTAC                                               <  SRR4302532.3268360/94‑1 (MQ=60)
                                               ccccgcaacAATCCAGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACG                                              <  SRR4302532.2201518/85‑1 (MQ=60)
                                                 CCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGC                                            <  SRR4302532.4620567/94‑1 (MQ=60)
                                                  CGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCA                                           <  SRR4302532.2243720/94‑1 (MQ=60)
                                                  CGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCA                                           >  SRR4302532.4835549/1‑94 (MQ=60)
                                                  CGCCAAAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCA                                           <  SRR4302532.4602175/94‑1 (MQ=60)
                                                    caagaatcgggttgTTGCTGACGTTAAAGATAAGGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAAT                                         <  SRR4302532.5347152/80‑1 (MQ=60)
                                                    CCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAAT                                         <  SRR4302532.6097512/94‑1 (MQ=60)
                                                     CAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATA                                        >  SRR4302532.1585718/1‑94 (MQ=60)
                                                      AGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATAT                                       >  SRR4302532.4684945/1‑94 (MQ=60)
                                                      AGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATAT                                       <  SRR4302532.4530973/94‑1 (MQ=60)
                                                        AATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCT                                     <  SRR4302532.2486853/94‑1 (MQ=60)
                                                        AATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCT                                     <  SRR4302532.2486852/94‑1 (MQ=60)
                                                        AATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCT                                     <  SRR4302532.1116803/94‑1 (MQ=60)
                                                        AATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCT                                     <  SRR4302532.455478/94‑1 (MQ=60)
                                                           CCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCA                                  <  SRR4302532.380698/94‑1 (MQ=60)
                                                           CCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCA                                  >  SRR4302532.5986488/1‑94 (MQ=60)
                                                            CGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCAC                                 >  SRR4302532.6358716/1‑94 (MQ=60)
                                                            CGGTGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCAC                                 <  SRR4302532.304269/94‑1 (MQ=60)
                                                               TGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCAT                              <  SRR4302532.3908692/94‑1 (MQ=60)
                                                               TGATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCAT                              <  SRR4302532.4341088/94‑1 (MQ=60)
                                                                GATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATC                             <  SRR4302532.5790925/94‑1 (MQ=60)
                                                                 ATTGCTGTCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCA                            >  SRR4302532.4627274/1‑94 (MQ=60)
                                                                 ATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCA                            >  SRR4302532.4231082/1‑94 (MQ=60)
                                                                 ATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCA                            <  SRR4302532.6315078/94‑1 (MQ=60)
                                                                 ATTGCTGCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGGAAGGCAGTATCTGCACCATCA                            >  SRR4302532.4926423/1‑94 (MQ=60)
                                                                  TTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAG                           <  SRR4302532.327811/94‑1 (MQ=60)
                                                                  TTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAG                           <  SRR4302532.5800437/94‑1 (MQ=60)
                                                                   TGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGT                          <  SRR4302532.5784648/94‑1 (MQ=60)
                                                                   TGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGT                          >  SRR4302532.4142755/1‑94 (MQ=60)
                                                                    GCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTA                         <  SRR4302532.6116556/94‑1 (MQ=60)
                                                                     CTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAA                        <  SRR4302532.2300976/94‑1 (MQ=60)
                                                                     CTGCCGTTAAAGATAATGCCAGCACGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAA                        <  SRR4302532.274903/94‑1 (MQ=60)
                                                                       GCCGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATA                      >  SRR4302532.6345360/1‑94 (MQ=60)
                                                                        CCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATAT                     <  SRR4302532.2818261/94‑1 (MQ=60)
                                                                         CGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATATC                    >  SRR4302532.4618692/1‑94 (MQ=60)
                                                                         CGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATATC                    >  SRR4302532.3228240/1‑94 (MQ=60)
                                                                         CGTTAAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATATC                    <  SRR4302532.5740531/94‑1 (MQ=60)
                                                                          GTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATATCG                   <  SRR4302532.865079/94‑1 (MQ=60)
                                                                             AAAGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATATCGTTA                <  SRR4302532.408491/94‑1 (MQ=60)
                                                                             AAAGATAATGCCAGCCCGCAACTAGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATATCGTTA                <  SRR4302532.3607629/94‑1 (MQ=60)
                                                                               AGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATATCGTTAAA              <  SRR4302532.3639399/94‑1 (MQ=60)
                                                                               AGATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATATCGTTAAA              <  SRR4302532.5145472/94‑1 (MQ=60)
                                                                                GATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATATCGTTAAAA             <  SRR4302532.5791068/94‑1 (MQ=60)
                                                                                GATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATATCGTTAAAA             >  SRR4302532.5170067/1‑94 (MQ=60)
                                                                                 ATAATGCCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATATCGTTAAAAA            >  SRR4302532.631247/1‑94 (MQ=60)
                                                                                  TAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATATCGTTAAAAAG           <  SRR4302532.2898299/94‑1 (MQ=60)
                                                                                     TGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATATCGTTAAAAAGATT        >  SRR4302532.4443773/1‑94 (MQ=60)
                                                                                     TGCCAGACCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATATCGTTAAAAAGATT        >  SRR4302532.496431/1‑94 (MQ=60)
                                                                                       CCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATATCGTTAAAAAGATTAA      >  SRR4302532.4374381/1‑94 (MQ=60)
                                                                                       CCAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATATCGTTAAAAAGATTAA      >  SRR4302532.3906261/1‑94 (MQ=60)
                                                                                        CAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATATCGTTAAAAAGATTAAG     <  SRR4302532.2560782/94‑1 (MQ=60)
                                                                                        CAGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATATCGTTAAAAAGATTAAG     <  SRR4302532.4507724/94‑1 (MQ=60)
                                                                                         AGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATATCGTTAAAAAGATTAAGA    <  SRR4302532.2834434/94‑1 (MQ=60)
                                                                                         AGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATATCGTTAAAAAGATTAAGA    >  SRR4302532.5966483/1‑94 (MQ=60)
                                                                                         AGCCCGCAGCTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATATCGTTAAAAAGATTAAGA    <  SRR4302532.1876924/94‑1 (MQ=60)
                                                                                         AGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATATCGTTAAAAAGATTAAGA    >  SRR4302532.802684/1‑94 (MQ=60)
                                                                                         AGCCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATATCGTTAAAAAGATTAAGA    >  SRR4302532.2445678/1‑94 (MQ=60)
                                                                                           CCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATATCGTTAAAAAGATTAAGAAC  >  SRR4302532.4833818/1‑94 (MQ=60)
                                                                                           CCCGCAACTGTCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATATCGTTAAAAAGATTAAGAAC  <  SRR4302532.4618128/94‑1 (MQ=60)
                                                                                           CCCGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATATCGTTAAAAAGATTAAGAAC  <  SRR4302532.1756999/94‑1 (MQ=60)
                                                                                             |                                                                                           
CCGCTTTGGATAAATAATAAGGATAATTTATGCCCCTCTTACACCTGCTCCGCCAGAATCCGGTGATTGCTGCCGTTAAAGATAATGCCAGCCTGCAACTGGCAATCGATTCTGAATGCCAATTTATTTCCGTGTTGTACGGCAATATCTGCACCATCAGTAATATCGTTAAAAAGATTAAGAAC  >  NC_000913/2892190‑2892374

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑