Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGGTGCCTTTAGTACGGCAAACCCGGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGCTTTTGCTCACGCCACCAATCAA  >  NC_000913/2945938‑2946123
                                                                                            |                                                                                             
TGGTGCCTTTAGTACGGCAAACCCGGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAAC                                                                                              >  SRR4302532.4679214/1‑94 (MQ=60)
   TGCCTTTAGTACGGCAAACCCGGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTC                                                                                           >  SRR4302532.1124252/1‑94 (MQ=60)
    GCCTTTAGTACGGCAAACCCGGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCA                                                                                          <  SRR4302532.6115987/94‑1 (MQ=60)
      CTTTAGTACGGCAAACCCGGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGG                                                                                        >  SRR4302532.6313303/1‑94 (MQ=60)
      CTTTAGTACGGCAAACCCGGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGG                                                                                        >  SRR4302532.4326795/1‑94 (MQ=60)
      CTTTAGTACGGCAAACCCGGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGG                                                                                        >  SRR4302532.4061916/1‑94 (MQ=60)
       TTTAGTACGGCAAACCCGGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGC                                                                                       >  SRR4302532.4144849/1‑94 (MQ=60)
       TTTAGTACGGCAAACCCGGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGC                                                                                       <  SRR4302532.3582606/94‑1 (MQ=60)
        TTAGTACGGCAAACCCGGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCT                                                                                      >  SRR4302532.2768742/1‑94 (MQ=60)
         TAGTACGGCAAACCCGGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTG                                                                                     <  SRR4302532.882903/94‑1 (MQ=60)
         TAGTACGGCAAACCCGGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTG                                                                                     >  SRR4302532.2714589/1‑94 (MQ=60)
         TAGTACGGCAAACCCGGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTG                                                                                     >  SRR4302532.4955867/1‑94 (MQ=60)
          AGTACGGCAAACCCGGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGT                                                                                    >  SRR4302532.4593523/1‑94 (MQ=60)
            GACGGCAAACCCGGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCG                                                                                  <  SRR4302532.5328460/94‑1 (MQ=60)
             ACGGCAAACCCGGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGG                                                                                 <  SRR4302532.1045954/94‑1 (MQ=60)
               GGCAAACCCGGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCA                                                                               >  SRR4302532.3284560/1‑94 (MQ=60)
                 CAAACCCGGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAAT                                                                             <  SRR4302532.2595518/94‑1 (MQ=60)
                  AAACCCGGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATG                                                                            <  SRR4302532.607611/94‑1 (MQ=60)
                    ACCCGGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGT                                                                          <  SRR4302532.3630702/94‑1 (MQ=60)
                     CCCGGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTC                                                                         >  SRR4302532.2487790/1‑94 (MQ=60)
                     CCCGGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTC                                                                         <  SRR4302532.5079225/94‑1 (MQ=60)
                     CCCGGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTC                                                                         >  SRR4302532.1558382/1‑94 (MQ=60)
                      CCGGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCA                                                                        <  SRR4302532.626747/94‑1 (MQ=60)
                      CCGGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCACGCTGTCGGCAATGGTCA                                                                        >  SRR4302532.5589913/1‑94 (MQ=60)
                       CGGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAG                                                                       <  SRR4302532.4526533/94‑1 (MQ=60)
                        GGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGC                                                                      >  SRR4302532.144101/1‑94 (MQ=60)
                        GGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGC                                                                      <  SRR4302532.2169924/94‑1 (MQ=60)
                        GGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGC                                                                      >  SRR4302532.3920295/1‑94 (MQ=60)
                        GGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGC                                                                      <  SRR4302532.4135384/94‑1 (MQ=60)
                          CCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGA                                                                    <  SRR4302532.949322/94‑1 (MQ=60)
                           CTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGAC                                                                   <  SRR4302532.2105853/94‑1 (MQ=60)
                           CTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGAC                                                                   >  SRR4302532.2235364/1‑94 (MQ=60)
                           CTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGAC                                                                   >  SRR4302532.4451073/1‑94 (MQ=60)
                           CTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGAC                                                                   <  SRR4302532.1909918/94‑1 (MQ=60)
                             GTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTG                                                                 >  SRR4302532.4894440/1‑94 (MQ=60)
                             GTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTG                                                                 >  SRR4302532.1267207/1‑94 (MQ=60)
                              TTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGT                                                                >  SRR4302532.4934196/1‑94 (MQ=60)
                              TTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGT                                                                <  SRR4302532.1507101/94‑1 (MQ=60)
                               TCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTA                                                               >  SRR4302532.5186459/1‑94 (MQ=60)
                               TCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTA                                                               >  SRR4302532.1571975/1‑94 (MQ=60)
                                CAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCACACTTCAGGCTGTCGGCAATGGTCAGCGACTGTAC                                                              >  SRR4302532.2830445/1‑94 (MQ=60)
                                CAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTAC                                                              >  SRR4302532.2830446/1‑94 (MQ=60)
                                CAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTAC                                                              <  SRR4302532.972895/94‑1 (MQ=60)
                                CAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTAC                                                              >  SRR4302532.774421/1‑94 (MQ=60)
                                 AACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACC                                                             >  SRR4302532.6046138/1‑94 (MQ=60)
                                 AACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACC                                                             >  SRR4302532.1329331/1‑94 (MQ=60)
                                  ACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTTGGCAATGGTCAGCGACTGTACCA                                                            >  SRR4302532.1919364/1‑94 (MQ=60)
                                  ACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCA                                                            >  SRR4302532.6161213/1‑94 (MQ=60)
                                  ACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCA                                                            >  SRR4302532.6148225/1‑94 (MQ=60)
                                  ACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCA                                                            <  SRR4302532.4104402/94‑1 (MQ=60)
                                     TGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATAT                                                         <  SRR4302532.5783100/94‑1 (MQ=60)
                                     TGATTTTTATGCAGCTTGTTGATTTTAACGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATAT                                                         >  SRR4302532.1229964/1‑94 (MQ=60)
                                       ATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCG                                                       <  SRR4302532.1661423/94‑1 (MQ=60)
                                       ATTTTTATGCAAATTGCTGATTTTACCGATCTTATTCAGTACCGCTTTACCCAGCTTCAGGCTGTCGGCATTGGTCAGCGACTGTACCATATCG                                                       >  SRR4302532.2913755/1‑94 (MQ=60)
                                         TTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAA                                                     <  SRR4302532.6033020/94‑1 (MQ=60)
                                          TTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAAC                                                    <  SRR4302532.1301974/94‑1 (MQ=60)
                                           TTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACA                                                   >  SRR4302532.4022493/1‑94 (MQ=60)
                                           TTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCATCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACA                                                   <  SRR4302532.3551313/94‑1 (MQ=60)
                                            TATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACAT                                                  <  SRR4302532.1065874/94‑1 (MQ=60)
                                            TATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACAT                                                  <  SRR4302532.3873224/94‑1 (MQ=60)
                                            TATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACAT                                                  <  SRR4302532.2048562/94‑1 (MQ=60)
                                             ATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATG                                                 >  SRR4302532.5940075/1‑94 (MQ=60)
                                             ATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATG                                                 >  SRR4302532.4217489/1‑94 (MQ=60)
                                              TGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGG                                                >  SRR4302532.6130761/1‑94 (MQ=60)
                                               GCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGT                                               >  SRR4302532.796050/1‑94 (MQ=60)
                                                 AGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGT                                             >  SRR4302532.757790/1‑94 (MQ=60)
                                                 AGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGT                                             <  SRR4302532.1159032/94‑1 (MQ=60)
                                                 AGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGT                                             >  SRR4302532.5577236/1‑94 (MQ=60)
                                                 AGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGT                                             >  SRR4302532.3079743/1‑94 (MQ=60)
                                                 AGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGT                                             >  SRR4302532.4884723/1‑94 (MQ=60)
                                                 AGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGT                                             <  SRR4302532.3657737/94‑1 (MQ=60)
                                                  GCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTG                                            <  SRR4302532.3817971/94‑1 (MQ=60)
                                                   CTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGG                                           <  SRR4302532.756008/94‑1 (MQ=60)
                                                   CTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGG                                           <  SRR4302532.756010/94‑1 (MQ=60)
                                                   CTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGG                                           >  SRR4302532.5996433/1‑94 (MQ=60)
                                                    TTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGT                                          >  SRR4302532.1967315/1‑94 (MQ=60)
                                                    TTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGT                                          >  SRR4302532.6191652/1‑94 (MQ=60)
                                                     TGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTC                                         >  SRR4302532.4408866/1‑94 (MQ=60)
                                                        TGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGAC                                      >  SRR4302532.1108066/1‑94 (MQ=60)
                                                        TGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGAC                                      <  SRR4302532.3191606/94‑1 (MQ=60)
                                                         GATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACA                                     >  SRR4302532.2904474/1‑94 (MQ=60)
                                                         GATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACA                                     <  SRR4302532.5487714/94‑1 (MQ=60)
                                                          ATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACAT                                    <  SRR4302532.5942074/94‑1 (MQ=60)
                                                          ATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACAT                                    <  SRR4302532.1509586/94‑1 (MQ=60)
                                                           TTTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATA                                   <  SRR4302532.3677270/94‑1 (MQ=60)
                                                            TTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAG                                  <  SRR4302532.481091/94‑1 (MQ=60)
                                                            TTTACCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAG                                  <  SRR4302532.481090/94‑1 (MQ=60)
                                                            TTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAG                                  <  SRR4302532.4194716/94‑1 (MQ=60)
                                                            TTTACCGAGCTTATTCAGTACCGCTGTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAG                                  <  SRR4302532.481089/94‑1 (MQ=60)
                                                             TTGCCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTCCCATATCGAACATGGTGTGGTCGACATAGC                                 <  SRR4302532.2032270/94‑1 (MQ=60)
                                                             TTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGC                                 >  SRR4302532.1043221/1‑94 (MQ=60)
                                                              TACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCG                                <  SRR4302532.3583049/94‑1 (MQ=60)
                                                               TCCGAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGG                               <  SRR4302532.5378273/94‑1 (MQ=60)
                                                               TCCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGG                               <  SRR4302532.5394526/94‑1 (MQ=60)
                                                                CCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGT                              <  SRR4302532.906966/94‑1 (MQ=60)
                                                                  GAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCA                            <  SRR4302532.2186174/94‑1 (MQ=60)
                                                                  GAGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCA                            >  SRR4302532.209315/1‑94 (MQ=60)
                                                                   AGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCAC                           <  SRR4302532.5016267/94‑1 (MQ=60)
                                                                   AGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCAC                           >  SRR4302532.77496/1‑94 (MQ=60)
                                                                   AGCTTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCAC                           >  SRR4302532.3459762/1‑94 (MQ=60)
                                                                     CTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCG                         <  SRR4302532.322731/94‑1 (MQ=60)
                                                                      TTATTCAGTACCGCTTTACCAAGCTTCATGCTGTCGGCAATGGTCAGCGACTGTACCATATCTAACATGGTGTGGTCGACATAGCGGTCACCGC                        >  SRR4302532.4456350/1‑94 (MQ=60)
                                                                      TTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGC                        >  SRR4302532.502122/1‑94 (MQ=60)
                                                                      TTATTCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGC                        >  SRR4302532.4456458/1‑94 (MQ=60)
                                                                      TTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGC                        >  SRR4302532.6093134/1‑94 (MQ=60)
                                                                       TATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGCT                       <  SRR4302532.2959536/94‑1 (MQ=60)
                                                                         TTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGCTTT                     >  SRR4302532.3238214/1‑94 (MQ=60)
                                                                          TCAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGCTTTT                    >  SRR4302532.5344041/1‑94 (MQ=60)
                                                                          TCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGCTTTT                    <  SRR4302532.1653767/94‑1 (MQ=60)
                                                                           CAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCCTATCGAACATGGTGTGGTCGACATAGCGGTCACCGCTTTTG                   >  SRR4302532.1959778/1‑94 (MQ=60)
                                                                           CAGTACCGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGCTTTTG                   >  SRR4302532.1959596/1‑94 (MQ=60)
                                                                           CAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGCTTTTG                   >  SRR4302532.5833161/1‑94 (MQ=60)
                                                                              TACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGCTTTTGCTC                >  SRR4302532.2650193/1‑94 (MQ=60)
                                                                               ACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGCTCACCGCTTTTGCTCA               >  SRR4302532.6041425/1‑94 (MQ=60)
                                                                                 CGCTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGCTTTTGCTCACG             >  SRR4302532.1505435/1‑94 (MQ=60)
                                                                                 CGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGCTTTTGCTCACG             <  SRR4302532.3713250/94‑1 (MQ=60)
                                                                                  GCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGCTTTTGCTCACGC            <  SRR4302532.6174340/94‑1 (MQ=60)
                                                                                  GCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGCTTTTGCTCACGC            >  SRR4302532.792357/1‑94 (MQ=60)
                                                                                  GCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGCTTTTGCTCACGC            >  SRR4302532.3922115/1‑94 (MQ=60)
                                                                                  GCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGGACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGCTTTTGATCACGC            >  SRR4302532.2418076/1‑94 (MQ=60)
                                                                                   CTTTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGCTTTTGCTCACGCC           <  SRR4302532.4532146/94‑1 (MQ=60)
                                                                                   CTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGCTTTTGCTCACGCC           >  SRR4302532.1297879/1‑94 (MQ=60)
                                                                                     TTACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGCTTTTGCTCACGCCAC         >  SRR4302532.843837/1‑94 (MQ=60)
                                                                                      TACCAAGCTTCAGGCTGGCGGCATTGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGCTTTTGCTCAAGCCCCC        >  SRR4302532.2341483/1‑94 (MQ=60)
                                                                                       ACCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGCTTTTGCTCACGCCACCA       >  SRR4302532.2555391/1‑94 (MQ=60)
                                                                                        CCAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGCTTTTGCTCACGCCACCAA      >  SRR4302532.2408737/1‑94 (MQ=60)
                                                                                         CAAGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGCTTTTGCTCACGCCACCAAT     >  SRR4302532.6283041/1‑94 (MQ=60)
                                                                                          AAACTTCAGGCTGTCGGCAATGGTCAGCGCCTGTACCATATCGAACATGGTGTGGTCGACATCGCGGTCACCGATTTTGCTCACGCCACaaata    >  SRR4302532.2307551/1‑89 (MQ=60)
                                                                                          AAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGCTTTTGCTCACGCCACCAATC    >  SRR4302532.4121920/1‑94 (MQ=60)
                                                                                          AAACATCAGGCTGTCGGCAATGGTCAGCGACTGTAACATATCGAACATGGTGTGGTCGACATAGCGGTCACCGCTTTTGCTCACGCCACCAATC    <  SRR4302532.5504068/94‑1 (MQ=60)
                                                                                           AGCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGCTTTTGCTCACGCCACCAATCA   <  SRR4302532.4922756/94‑1 (MQ=60)
                                                                                           AACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGCTTTTGCTCACGCCACCAATCA   >  SRR4302532.1221290/1‑94 (MQ=60)
                                                                                           AACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGCTTTTGCTCACGCCACCAATCA   >  SRR4302532.1221291/1‑94 (MQ=60)
                                                                                            GCTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGCTTTTGCTCACGCCACCAATCAA  >  SRR4302532.6317756/1‑94 (MQ=60)
                                                                                            ACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGCTTTTGCTCACGCCACCAATCAA  >  SRR4302532.2055898/1‑94 (MQ=60)
                                                                                            |                                                                                             
TGGTGCCTTTAGTACGGCAAACCCGGCCTGTTCAACTTGATTTTTATGCAGCTTGTTGATTTTACCGAGCTTATTCAGTACCGCTTTACCAAACTTCAGGCTGTCGGCAATGGTCAGCGACTGTACCATATCGAACATGGTGTGGTCGACATAGCGGTCACCGCTTTTGCTCACGCCACCAATCAA  >  NC_000913/2945938‑2946123

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑