Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
ATATGGATCAGTTCTGGTCACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCT  >  NC_000913/3301876‑3302062
                                                                                             |                                                                                             
ATATGGATCAGTTCTGGTCACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGA                                                                                               <  SRR4302532.672579/94‑1 (MQ=60)
   TGGATCAGTTCTGGTCACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTT                                                                                            >  SRR4302532.6043957/1‑94 (MQ=60)
   TGGATCAGTTCTGGTCACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGACAAAGCGAAAGTGCGTCATGACTT                                                                                            <  SRR4302532.4125538/94‑1 (MQ=60)
    GGATCAGTTCTGGTCACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTG                                                                                           <  SRR4302532.1976973/94‑1 (MQ=60)
     GATCAGTTCTGGTCACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGC                                                                                          <  SRR4302532.4647415/94‑1 (MQ=60)
     GATCAGTTCTGGTCACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGC                                                                                          <  SRR4302532.3435659/94‑1 (MQ=60)
     GATCAGTTCTGGTCACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGC                                                                                          >  SRR4302532.4862939/1‑94 (MQ=60)
     GATCAGTTCTGGTCACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGC                                                                                          >  SRR4302532.2314731/1‑94 (MQ=60)
      ATCAGTTCTGGTCACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCA                                                                                         <  SRR4302532.3724640/94‑1 (MQ=60)
      ATCAGTTCTGGTCACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCA                                                                                         <  SRR4302532.1683/94‑1 (MQ=60)
       TCAGTTCTGGTCACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAG                                                                                        <  SRR4302532.1018579/94‑1 (MQ=60)
       TCAGTTCTGGTCACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAG                                                                                        <  SRR4302532.445882/94‑1 (MQ=60)
        CAGTTCTGGTCACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGT                                                                                       >  SRR4302532.1588228/1‑94 (MQ=60)
         AGTTCTGCTCACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTC                                                                                      <  SRR4302532.3113708/94‑1 (MQ=60)
          GTTCTGGTCACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCG                                                                                     >  SRR4302532.5205053/1‑94 (MQ=60)
           TTCTGGTCACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGA                                                                                    >  SRR4302532.819446/1‑94 (MQ=60)
            TCTGGTCACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGAT                                                                                   >  SRR4302532.3922382/1‑94 (MQ=60)
             CTGGTCACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGATC                                                                                  >  SRR4302532.3796898/1‑94 (MQ=60)
             CTGGTCACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGATC                                                                                  >  SRR4302532.5882265/1‑94 (MQ=60)
              TGGTCACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTTATGGCTTGCAGTCGATCC                                                                                 >  SRR4302532.5968968/1‑94 (MQ=60)
              TGGTCACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCC                                                                                 >  SRR4302532.3424631/1‑94 (MQ=60)
              TGGTCACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCC                                                                                 >  SRR4302532.3858853/1‑94 (MQ=60)
                GTCACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTG                                                                               >  SRR4302532.6006417/1‑94 (MQ=60)
                 TCACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGC                                                                              <  SRR4302532.1374620/94‑1 (MQ=60)
                  CACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGATCCTGCG                                                                             >  SRR4302532.2261947/1‑94 (MQ=60)
                  CACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGATCCTGCG                                                                             <  SRR4302532.3112993/94‑1 (MQ=60)
                  CACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGATCCTGCG                                                                             >  SRR4302532.5189948/1‑94 (MQ=60)
                  CACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCG                                                                             >  SRR4302532.4473935/1‑94 (MQ=60)
                  CACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCG                                                                             <  SRR4302532.2384420/94‑1 (MQ=60)
                   ACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGATCCTGCGC                                                                            >  SRR4302532.2614567/1‑94 (MQ=60)
                   ACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGC                                                                            >  SRR4302532.400452/1‑94 (MQ=60)
                   ACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGC                                                                            >  SRR4302532.3271442/1‑94 (MQ=60)
                    CCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGATCCTGCGCG                                                                           >  SRR4302532.57469/1‑94 (MQ=60)
                      GTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGATCCTGCGCGAA                                                                         <  SRR4302532.2237844/94‑1 (MQ=60)
                      GTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAA                                                                         >  SRR4302532.1834242/1‑94 (MQ=60)
                      GTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAA                                                                         >  SRR4302532.1579411/1‑94 (MQ=60)
                        CTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAAC                                                                       >  SRR4302532.3942453/1‑94 (MQ=60)
                        CTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAAC                                                                       <  SRR4302532.4491381/94‑1 (MQ=60)
                         CGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACC                                                                      <  SRR4302532.2848486/94‑1 (MQ=60)
                           AGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGATCCTGCGCGAAACCGA                                                                    <  SRR4302532.4261533/94‑1 (MQ=60)
                           AGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGC                                                                    >  SRR4302532.872809/1‑94 (MQ=60)
                           AGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGA                                                                    >  SRR4302532.5244863/1‑94 (MQ=60)
                           AGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGA                                                                    >  SRR4302532.3159466/1‑94 (MQ=60)
                           AGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGA                                                                    >  SRR4302532.6093597/1‑94 (MQ=60)
                            GCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGATCCTGCGCGAAACCGAC                                                                   <  SRR4302532.6211395/94‑1 (MQ=60)
                            GCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGATCCTGCGCGAAACCGAC                                                                   <  SRR4302532.1125170/94‑1 (MQ=60)
                            GCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGAC                                                                   <  SRR4302532.3151967/94‑1 (MQ=60)
                            GCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGAC                                                                   <  SRR4302532.2099539/94‑1 (MQ=60)
                            GCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGAC                                                                   <  SRR4302532.2190263/94‑1 (MQ=60)
                              AGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGC                                                                 >  SRR4302532.2303706/1‑94 (MQ=60)
                               GTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGATCCTGCGCGAAACCGACGCC                                                                <  SRR4302532.5781739/94‑1 (MQ=60)
                               GTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCC                                                                <  SRR4302532.3060431/94‑1 (MQ=60)
                                TATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGATACTGCGCGAAACCGACGCCG                                                               >  SRR4302532.877354/1‑94 (MQ=60)
                                TATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCG                                                               <  SRR4302532.5330725/94‑1 (MQ=60)
                                 ATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGATCCTGCGCGAAACCGACGCCGA                                                              >  SRR4302532.5400212/1‑94 (MQ=60)
                                  TGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGAT                                                             <  SRR4302532.2529009/94‑1 (MQ=60)
                                   GGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGATCCTGCGCGAAACCGACGCCGATG                                                            <  SRR4302532.1397859/94‑1 (MQ=60)
                                    GCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGA                                                           <  SRR4302532.76025/94‑1 (MQ=60)
                                      GTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGA                                                         >  SRR4302532.989742/1‑94 (MQ=60)
                                      GTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGA                                                         >  SRR4302532.2142843/1‑94 (MQ=60)
                                       GGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCTATCCTGCGCGAAACCGACGCCGATGAGAT                                                        <  SRR4302532.1874839/94‑1 (MQ=60)
                                        GCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATT                                                       >  SRR4302532.1602770/1‑94 (MQ=60)
                                          AGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTAT                                                     <  SRR4302532.3196175/94‑1 (MQ=60)
                                           GCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATG                                                    <  SRR4302532.2656710/94‑1 (MQ=60)
                                            CAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGG                                                   >  SRR4302532.3559014/1‑94 (MQ=60)
                                            CAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGG                                                   <  SRR4302532.863394/94‑1 (MQ=60)
                                            CAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGG                                                   <  SRR4302532.2040729/94‑1 (MQ=60)
                                            CAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGG                                                   <  SRR4302532.6073580/94‑1 (MQ=60)
                                             AGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGT                                                  >  SRR4302532.3971898/1‑94 (MQ=60)
                                                CGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAA                                               >  SRR4302532.763258/1‑94 (MQ=60)
                                                CGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAA                                               >  SRR4302532.2391435/1‑94 (MQ=60)
                                                  CTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACG                                             >  SRR4302532.3499320/1‑94 (MQ=60)
                                                   TGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGG                                            >  SRR4302532.2939042/1‑94 (MQ=60)
                                                   TGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGG                                            <  SRR4302532.2280950/94‑1 (MQ=60)
                                                    GAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGG                                           <  SRR4302532.3936432/94‑1 (MQ=60)
                                                    GAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGG                                           >  SRR4302532.3394210/1‑94 (MQ=60)
                                                       TATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAG                                        >  SRR4302532.2722323/1‑94 (MQ=60)
                                                         TGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTGGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGAT                                      <  SRR4302532.714600/94‑1 (MQ=60)
                                                          ggcggtgggAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATT                                     <  SRR4302532.3753670/85‑1 (MQ=60)
                                                          GTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATT                                     <  SRR4302532.835280/94‑1 (MQ=60)
                                                            CGTGGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAGTTGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTT                                   <  SRR4302532.3324685/94‑1 (MQ=60)
                                                             GTTGTTAGGTGATAAAGCTAAAGCGCGTCATGGCTTGCAGTCGATCCTGGGCGAAACCGACGCCGATGAGATTATGGTCAACGGGAAGATTTTC                                  <  SRR4302532.5156059/94‑1 (MQ=60)
                                                             GTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTC                                  <  SRR4302532.2862746/94‑1 (MQ=60)
                                                             GTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTC                                  <  SRR4302532.691299/94‑1 (MQ=60)
                                                             GTTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTC                                  >  SRR4302532.6052083/1‑94 (MQ=60)
                                                              TTGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCG                                 >  SRR4302532.56987/1‑94 (MQ=60)
                                                              TTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCG                                 <  SRR4302532.3793696/94‑1 (MQ=60)
                                                              TTGGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCG                                 <  SRR4302532.4778561/94‑1 (MQ=60)
                                                                GGTAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGAC                               <  SRR4302532.2685566/94‑1 (MQ=60)
                                                                  TAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCA                             >  SRR4302532.1750087/1‑94 (MQ=60)
                                                                  TAGGTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCA                             <  SRR4302532.1176791/94‑1 (MQ=60)
                                                                     GTGATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCA                          >  SRR4302532.5485502/1‑94 (MQ=60)
                                                                     GTGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATTAGATTATGGTCAACGGGCAGATTTTCGACCACCA                          <  SRR4302532.1631262/94‑1 (MQ=60)
                                                                      TGATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAG                         >  SRR4302532.941102/1‑94 (MQ=60)
                                                                       GATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGG                        <  SRR4302532.5309718/94‑1 (MQ=60)
                                                                       GATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGG                        <  SRR4302532.1885946/94‑1 (MQ=60)
                                                                       GATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGG                        >  SRR4302532.3023305/1‑94 (MQ=60)
                                                                       GATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGG                        <  SRR4302532.2023175/94‑1 (MQ=60)
                                                                       GATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGG                        <  SRR4302532.2023174/94‑1 (MQ=60)
                                                                        ATAAAGCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGC                       <  SRR4302532.5124039/94‑1 (MQ=60)
                                                                          AAAGCGAAAGTGCGTCATGGCTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGC                     >  SRR4302532.3313802/1‑94 (MQ=60)
                                                                          AAAGCCAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGC                     <  SRR4302532.2208237/94‑1 (MQ=60)
                                                                           AAGCGAAAGTGCGTCATGGCTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCG                    >  SRR4302532.653753/1‑94 (MQ=60)
                                                                           AAGCGAAAGCGCGTCATGCCTTGCAGTCGATCCTGCGCGAATCCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCG                    <  SRR4302532.5805468/94‑1 (MQ=60)
                                                                             GCGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGC                  <  SRR4302532.3485166/94‑1 (MQ=60)
                                                                              CGAAAGTGCGTCATGGCTTGCAGTCGATTCTGTGCGAAACTGACGCCGATGTTATTATGGTCAACTGGCAGATTGTCGACCACCAGGTTCGGCT                 >  SRR4302532.5867569/1‑94 (MQ=60)
                                                                              CGAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCT                 >  SRR4302532.2008782/1‑94 (MQ=60)
                                                                              CGAAAGTGCGGCATGGCTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCccccggggcggcg                 >  SRR4302532.4820475/1‑81 (MQ=60)
                                                                               GAAAGTGCGTCATGGCTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTG                <  SRR4302532.3239668/94‑1 (MQ=60)
                                                                               GAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGTAGATCTTCGACCACCAGGCGCGGCTG                >  SRR4302532.1107491/1‑94 (MQ=60)
                                                                               GAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTG                >  SRR4302532.3147721/1‑94 (MQ=60)
                                                                               GAAAGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTG                >  SRR4302532.6027742/1‑94 (MQ=60)
                                                                                AAAGTGCCTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGC               <  SRR4302532.5394256/94‑1 (MQ=60)
                                                                                 AAGTGCGTCATGGCTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCA              >  SRR4302532.1803127/1‑94 (MQ=60)
                                                                                  AGTGCGTCATGGCTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCAT             <  SRR4302532.1878651/94‑1 (MQ=60)
                                                                                  AGTGCGTCATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCAT             >  SRR4302532.6170514/1‑94 (MQ=60)
                                                                                   GTGCGTCATGGCTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATT            <  SRR4302532.4128632/94‑1 (MQ=60)
                                                                                     GCGTCATGGCTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCG          <  SRR4302532.2835805/94‑1 (MQ=60)
                                                                                       GTCATGGCTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTT        >  SRR4302532.5551374/1‑94 (MQ=60)
                                                                                       GTCATGGCTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTT        >  SRR4302532.5276067/1‑94 (MQ=60)
                                                                                       GTCATGGCTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGGT        >  SRR4302532.2779052/1‑94 (MQ=60)
                                                                                         CATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTAGTTTG      >  SRR4302532.815774/1‑94 (MQ=60)
                                                                                          ATGGCTTGCAGTCGATCCTGCGCGAACCCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGA     <  SRR4302532.4649853/94‑1 (MQ=60)
                                                                                          ATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGA     >  SRR4302532.6290592/1‑94 (MQ=60)
                                                                                          ATGACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGA     >  SRR4302532.4322044/1‑94 (MQ=60)
                                                                                             ACTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCT  >  SRR4302532.5605632/1‑94 (MQ=60)
                                                                                             |                                                                                             
ATATGGATCAGTTCTGGTCACCGTCTGAGCAGTATGGCGTGCAGCAGGCGCTGAGTATGTCGTTGGTAGGTGATAAAGCGAAAGTGCGTCATGGCTTGCAGTCGATCCTGCGCGAAACCGACGCCGATGAGATTATGGTCAACGGGCAGATTTTCGACCACCAGGCGCGGCTGCATTCGTTTGAGCT  >  NC_000913/3301876‑3302062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑