Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCATGCTAATAGACGCGTTCTCATCGG  >  NC_000913/3438080‑3438266
                                                                                             |                                                                                             
GTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCT                                                                                               >  SRR4302532.5609330/1‑94 (MQ=60)
GTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACAGCCGATTGGGCGCT                                                                                               >  SRR4302532.3072727/1‑94 (MQ=60)
  ACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCA                                                                                             <  SRR4302532.3483098/94‑1 (MQ=60)
  ACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCA                                                                                             >  SRR4302532.4750538/1‑94 (MQ=60)
    GCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATC                                                                                           >  SRR4302532.5270909/1‑94 (MQ=60)
     CTGTTCTACACGCGCTGCTTCAATATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCT                                                                                          <  SRR4302532.4652318/94‑1 (MQ=60)
     CTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCT                                                                                          >  SRR4302532.6030362/1‑94 (MQ=60)
      TGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTT                                                                                         <  SRR4302532.265743/94‑1 (MQ=60)
       GTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTC                                                                                        >  SRR4302532.3937296/1‑94 (MQ=60)
       GTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTC                                                                                        >  SRR4302532.2891113/1‑94 (MQ=60)
        TTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCT                                                                                       <  SRR4302532.2194792/94‑1 (MQ=60)
          CTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTC                                                                                     <  SRR4302532.6055215/94‑1 (MQ=60)
          CTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTC                                                                                     >  SRR4302532.4745980/1‑94 (MQ=60)
          CTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTC                                                                                     >  SRR4302532.2040627/1‑94 (MQ=60)
          CTACACGCGATGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATACGACGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTC                                                                                     <  SRR4302532.5857180/94‑1 (MQ=60)
            ACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCG                                                                                   <  SRR4302532.3013814/94‑1 (MQ=60)
            ACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCG                                                                                   <  SRR4302532.4562368/94‑1 (MQ=60)
              ACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAA                                                                                 <  SRR4302532.80837/94‑1 (MQ=60)
              ACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAA                                                                                 <  SRR4302532.5043110/94‑1 (MQ=60)
               CGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCAGAAT                                                                                >  SRR4302532.4478996/1‑94 (MQ=60)
               CGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAAT                                                                                >  SRR4302532.4350357/1‑94 (MQ=60)
                 CGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGA                                                                              >  SRR4302532.2473216/1‑94 (MQ=60)
                 CGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGA                                                                              >  SRR4302532.1391417/1‑94 (MQ=60)
                     GCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTC                                                                          >  SRR4302532.1137940/1‑94 (MQ=60)
                      CTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCG                                                                         <  SRR4302532.3215969/94‑1 (MQ=60)
                      CTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCG                                                                         <  SRR4302532.5534826/94‑1 (MQ=60)
                       TTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGG                                                                        <  SRR4302532.527049/94‑1 (MQ=60)
                       TTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGG                                                                        >  SRR4302532.5846090/1‑94 (MQ=60)
                       TTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGG                                                                        <  SRR4302532.5952638/94‑1 (MQ=60)
                       TTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGG                                                                        >  SRR4302532.2125909/1‑94 (MQ=60)
                        TCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGG                                                                       <  SRR4302532.157435/94‑1 (MQ=60)
                           ACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAG                                                                    <  SRR4302532.2889503/94‑1 (MQ=60)
                            CATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGA                                                                   >  SRR4302532.4098796/1‑94 (MQ=60)
                            CATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGA                                                                   >  SRR4302532.5147351/1‑94 (MQ=60)
                             ATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAA                                                                  >  SRR4302532.5482947/1‑94 (MQ=60)
                             ATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAA                                                                  >  SRR4302532.361280/1‑94 (MQ=60)
                              TTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAG                                                                 <  SRR4302532.6297858/94‑1 (MQ=60)
                              TTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAG                                                                 <  SRR4302532.2321939/94‑1 (MQ=60)
                                GTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCC                                                               <  SRR4302532.3331788/94‑1 (MQ=60)
                                  AGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGG                                                             <  SRR4302532.189274/94‑1 (MQ=60)
                                  AGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGG                                                             <  SRR4302532.256673/94‑1 (MQ=60)
                                  AGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGG                                                             <  SRR4302532.5903573/94‑1 (MQ=60)
                                  AGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGG                                                             <  SRR4302532.2332715/94‑1 (MQ=60)
                                   GGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGC                                                            <  SRR4302532.4023841/94‑1 (MQ=60)
                                     CAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCAC                                                          <  SRR4302532.4647666/94‑1 (MQ=60)
                                     CAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCAC                                                          <  SRR4302532.3523815/94‑1 (MQ=60)
                                      AATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACA                                                         >  SRR4302532.493699/1‑94 (MQ=60)
                                       ATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACAT                                                        >  SRR4302532.5239270/1‑94 (MQ=60)
                                       ATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACAT                                                        <  SRR4302532.1985494/94‑1 (MQ=60)
                                         ACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAA                                                      <  SRR4302532.5740147/94‑1 (MQ=60)
                                          CGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAAC                                                     >  SRR4302532.49329/1‑94 (MQ=60)
                                           GCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACC                                                    >  SRR4302532.656824/1‑94 (MQ=60)
                                           GCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACC                                                    >  SRR4302532.1223836/1‑94 (MQ=60)
                                            CTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCA                                                   <  SRR4302532.5224742/94‑1 (MQ=60)
                                             TCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCAC                                                  >  SRR4302532.4653412/1‑94 (MQ=60)
                                             TCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCAC                                                  <  SRR4302532.4671367/94‑1 (MQ=60)
                                              CCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACG                                                 <  SRR4302532.6075475/94‑1 (MQ=60)
                                               CACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGA                                                <  SRR4302532.1192930/94‑1 (MQ=60)
                                                  AGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGCATGAATTAGGGTAGAAGCCGGCACATAACCACAACCG                                             >  SRR4302532.1524811/1‑94 (MQ=60)
                                                   GGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGC                                            >  SRR4302532.2590177/1‑94 (MQ=60)
                                                    GGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCG                                           <  SRR4302532.4250502/94‑1 (MQ=60)
                                                      CTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCT                                         >  SRR4302532.5269223/1‑94 (MQ=60)
                                                      CTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCT                                         <  SRR4302532.1130955/94‑1 (MQ=60)
                                                      CTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCT                                         >  SRR4302532.2051176/1‑94 (MQ=60)
                                                       TGTAGCATGCGTCGACCAACAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTG                                        <  SRR4302532.2478017/94‑1 (MQ=60)
                                                        GTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGA                                       >  SRR4302532.2485148/1‑94 (MQ=60)
                                                        GTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGA                                       <  SRR4302532.655722/94‑1 (MQ=60)
                                                         TAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAA                                      >  SRR4302532.4664901/1‑94 (MQ=60)
                                                           GCATGCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACT                                    <  SRR4302532.2757952/94‑1 (MQ=60)
                                                             ATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTT                                  >  SRR4302532.2249361/1‑94 (MQ=60)
                                                             ATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTT                                  >  SRR4302532.3286077/1‑94 (MQ=60)
                                                             ATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTT                                  >  SRR4302532.1362108/1‑94 (MQ=60)
                                                             ATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCCCTGAACTTT                                  >  SRR4302532.2280682/1‑94 (MQ=60)
                                                               GCGTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGA                                <  SRR4302532.2764728/94‑1 (MQ=60)
                                                                CGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGAT                               <  SRR4302532.4004642/94‑1 (MQ=60)
                                                                 GTCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATA                              <  SRR4302532.757351/94‑1 (MQ=60)
                                                                  TCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATAC                             <  SRR4302532.3290585/94‑1 (MQ=60)
                                                                  TCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATAC                             <  SRR4302532.5898767/94‑1 (MQ=60)
                                                                  TCGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATAC                             <  SRR4302532.1308137/94‑1 (MQ=60)
                                                                   CGACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACG                            >  SRR4302532.1666927/1‑94 (MQ=60)
                                                                    GACCAGCAGACGGCCGATTGGGGGCTCATCTTCTTCCGAATGAGGTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGC                           >  SRR4302532.3292128/1‑94 (MQ=60)
                                                                    GACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGC                           <  SRR4302532.429020/94‑1 (MQ=60)
                                                                    GACCAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGC                           <  SRR4302532.429021/94‑1 (MQ=60)
                                                                      CCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCAT                         <  SRR4302532.5981460/94‑1 (MQ=60)
                                                                      CCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCAT                         <  SRR4302532.6323362/94‑1 (MQ=60)
                                                                      CCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCAT                         <  SRR4302532.2296794/94‑1 (MQ=60)
                                                                       CAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCATG                        <  SRR4302532.4240745/94‑1 (MQ=60)
                                                                       CAGCAGACGGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCATG                        >  SRR4302532.1111118/1‑94 (MQ=60)
                                                                           AGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCATGCTAA                    >  SRR4302532.3263362/1‑94 (MQ=60)
                                                                           AGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCATGCTAA                    >  SRR4302532.3263361/1‑94 (MQ=60)
                                                                           AGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGACGGCACATAACCACGACCGCGCTGAACTTTGATACGCttcttat                    >  SRR4302532.5437139/1‑87 (MQ=60)
                                                                             ACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCATGCTAATA                  <  SRR4302532.708425/94‑1 (MQ=60)
                                                                              CGGCCGAGTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCATGCTAATAG                 <  SRR4302532.2266070/94‑1 (MQ=60)
                                                                               GGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCATGCTAATAGA                <  SRR4302532.2062966/94‑1 (MQ=60)
                                                                               GGCCGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCATGCTAATAGA                >  SRR4302532.1720985/1‑94 (MQ=60)
                                                                                GCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCATGCTAATAGAC               <  SRR4302532.4828027/94‑1 (MQ=60)
                                                                                 CCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCATGCTAATAGACG              <  SRR4302532.6057610/94‑1 (MQ=60)
                                                                                 CCGATTGCGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCATGCTAATACACG              <  SRR4302532.1816075/94‑1 (MQ=60)
                                                                                  CGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCATGCTAATAGACGC             >  SRR4302532.4257942/1‑94 (MQ=60)
                                                                                  CGATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCATGCTAATAGACGC             <  SRR4302532.4190900/94‑1 (MQ=60)
                                                                                    ATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACTCATGCTAATAGACCCGT           >  SRR4302532.5544276/1‑94 (MQ=60)
                                                                                    ATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCATGCTAATAGACGCGT           >  SRR4302532.2674153/1‑94 (MQ=60)
                                                                                    ATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCATGCTAATAGACGCGT           <  SRR4302532.1680499/94‑1 (MQ=60)
                                                                                    ATTGGGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCATGCTAATAGACGCGT           <  SRR4302532.5729072/94‑1 (MQ=60)
                                                                                        GGCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCATGCTAATAGACGCGTTCTC       <  SRR4302532.4285775/94‑1 (MQ=60)
                                                                                         GCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCATGCTAATAGACGCGTTCTCA      >  SRR4302532.3323173/1‑94 (MQ=60)
                                                                                         GCGCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCATGCTAATAGACGCGTTCTCA      <  SRR4302532.329055/94‑1 (MQ=60)
                                                                                          CGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCATGCTAATAGACGCGTTCTCAT     <  SRR4302532.5592693/94‑1 (MQ=60)
                                                                                          CGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCATGCTAATAGACGCGTTCTCAT     <  SRR4302532.2364869/94‑1 (MQ=60)
                                                                                           GCCCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCATGCTAATAGACGCGTTCTCATC    <  SRR4302532.2946125/94‑1 (MQ=60)
                                                                                            CTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCATGCTAATAGACGCGTTCTCATCG   <  SRR4302532.3982330/94‑1 (MQ=60)
                                                                                            CTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCATGCTAATAGACGCGTTCTCATCG   <  SRR4302532.4403900/94‑1 (MQ=60)
                                                                                             TCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCATGCTAATAGACGCGTTCTCATCGG  <  SRR4302532.700474/94‑1 (MQ=60)
                                                                                             |                                                                                             
GTACGCTGTTCTACACGCGCTGCTTCAACATTGTAGGCAATACGCTCCACAGGGCTGTAGCATGCGTCGACCAGCAGACGGCCGATTGGGCGCTCATCTTCTTCCGAATGAATTCGGGTAGAAGCCGGCACATAACCACGACCGCGCTGAACTTTGATACGCATGCTAATAGACGCGTTCTCATCGG  >  NC_000913/3438080‑3438266

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑