Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GTGATCGCGCTCACATGAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTGACAGCCAGGCCGTTTGCTCC  >  NC_000913/3519917‑3520102
                                                                                            |                                                                                             
GTGATCGCGCTCACATGAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGAC                                                                                              >  SRR4302532.4633531/1‑94 (MQ=60)
 TGATCGCGCTCACATGAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACT                                                                                             >  SRR4302532.1854038/1‑94 (MQ=60)
     CGCGCTCACATGAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGT                                                                                         <  SRR4302532.2509611/94‑1 (MQ=60)
     CGCGCTCACATGAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGT                                                                                         <  SRR4302532.1350351/94‑1 (MQ=60)
      GCGCTCACATGAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTG                                                                                        <  SRR4302532.1307232/94‑1 (MQ=60)
       CGCTCACATGAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGGGA                                                                                       >  SRR4302532.4578386/1‑94 (MQ=60)
       CGCTCACATGAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGA                                                                                       <  SRR4302532.811530/94‑1 (MQ=60)
        GCTCACATGAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGGGTGAG                                                                                      >  SRR4302532.1778398/1‑94 (MQ=60)
        GCTCACATGAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAG                                                                                      <  SRR4302532.5442159/94‑1 (MQ=60)
          TCACATGAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTC                                                                                    <  SRR4302532.4971234/94‑1 (MQ=60)
           CACATGAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCT                                                                                   >  SRR4302532.5184196/1‑94 (MQ=60)
             CATGAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTC                                                                                 <  SRR4302532.3082991/94‑1 (MQ=60)
             CATGAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTC                                                                                 <  SRR4302532.4697543/94‑1 (MQ=60)
             CATGAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTC                                                                                 <  SRR4302532.3681537/94‑1 (MQ=60)
             CATGAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTCAGTGAGgcgtc                                                                                 >  SRR4302532.3526099/1‑89 (MQ=60)
              ATGAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTTG                                                                                >  SRR4302532.127837/1‑94 (MQ=60)
              ATGAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGGCTTCC                                                                                >  SRR4302532.6019100/1‑94 (MQ=60)
              ATGAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCG                                                                                <  SRR4302532.328374/94‑1 (MQ=60)
                 AACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTG                                                                             >  SRR4302532.3744589/1‑94 (MQ=60)
                 AACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTT                                                                             >  SRR4302532.3744588/1‑94 (MQ=60)
                    ACGCAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGGGAGTCTTCGCTGTAA                                                                          >  SRR4302532.199567/1‑94 (MQ=60)
                     CGCATCCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAAT                                                                         <  SRR4302532.3886997/94‑1 (MQ=60)
                     CGCAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAAT                                                                         >  SRR4302532.6242841/1‑94 (MQ=60)
                     CGCAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAAT                                                                         >  SRR4302532.2967808/1‑94 (MQ=60)
                      GCAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATC                                                                        <  SRR4302532.251497/94‑1 (MQ=60)
                      GCAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATC                                                                        <  SRR4302532.5344601/94‑1 (MQ=60)
                      GCAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATC                                                                        <  SRR4302532.5344600/94‑1 (MQ=60)
                       CAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCG                                                                       <  SRR4302532.284867/94‑1 (MQ=60)
                       CAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCG                                                                       >  SRR4302532.5542018/1‑94 (MQ=60)
                        AACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGA                                                                      >  SRR4302532.1001782/1‑94 (MQ=60)
                        AACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGA                                                                      >  SRR4302532.382403/1‑94 (MQ=60)
                         ACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGGTGGGGGCGTCTTCGCTGTAATCGAC                                                                     >  SRR4302532.216838/1‑94 (MQ=60)
                         ACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAA                                                                     >  SRR4302532.1685641/1‑94 (MQ=60)
                         ACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAA                                                                     <  SRR4302532.5411366/94‑1 (MQ=60)
                         ACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTACGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAA                                                                     >  SRR4302532.4930153/1‑94 (MQ=60)
                           CTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGC                                                                   <  SRR4302532.1397355/94‑1 (MQ=60)
                           CTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGATTGAGTGAGTCTTCGCTGTAATTGAAGC                                                                   >  SRR4302532.3470776/1‑94 (MQ=60)
                           CTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGC                                                                   <  SRR4302532.2003222/94‑1 (MQ=60)
                           CTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGGGAGTCTTCGCTGTAATCGAAGC                                                                   >  SRR4302532.490859/1‑94 (MQ=60)
                           CTTTCTGCCAGAGTAAGAAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGC                                                                   >  SRR4302532.4311539/1‑94 (MQ=60)
                             TTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGC                                                                 <  SRR4302532.640855/94‑1 (MQ=60)
                               CTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAG                                                               >  SRR4302532.5331047/1‑94 (MQ=60)
                               CTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAG                                                               <  SRR4302532.6307286/94‑1 (MQ=60)
                                TGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGTCGGGGCTGAGTGAGTCTGCGCTGTAATCGAAGCGCAGG                                                              <  SRR4302532.4121216/94‑1 (MQ=60)
                                TGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGTGTGAGTCTTCGCTGTAATCGAACCGCAGG                                                              >  SRR4302532.2750673/1‑94 (MQ=60)
                                 GCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGG                                                             >  SRR4302532.961783/1‑94 (MQ=60)
                                 GCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCCGAGTGAGTCTTCGTTGTAATCGAAGCGGAGGG                                                             >  SRR4302532.2876554/1‑94 (MQ=60)
                                 GCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGG                                                             >  SRR4302532.1487177/1‑94 (MQ=60)
                                  gcaggGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGA                                                            <  SRR4302532.2011256/89‑1 (MQ=60)
                                  CCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTtttccctttaatccaagcccacggg                                                            >  SRR4302532.1558465/1‑69 (MQ=60)
                                  CCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGA                                                            >  SRR4302532.830947/1‑94 (MQ=60)
                                  CCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAACGCAGGGA                                                            >  SRR4302532.2125163/1‑94 (MQ=60)
                                  CCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGGCTTCGCTGTAATCGAAGCGCAGGGG                                                            >  SRR4302532.30554/1‑94 (MQ=60)
                                   CAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCCGGGAG                                                           >  SRR4302532.1888144/1‑94 (MQ=60)
                                    AGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGGGT                                                          >  SRR4302532.3219367/1‑94 (MQ=60)
                                     GAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGGGAGTCTTCGCTGTAATCGAAGCGCAGGGAGGC                                                         >  SRR4302532.3614161/1‑94 (MQ=60)
                                      AGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGGGAGTCTTCGCTGTAATCGAAGGGCAGGGAGTCC                                                        >  SRR4302532.1841512/1‑94 (MQ=60)
                                       GTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCG                                                       >  SRR4302532.2373294/1‑94 (MQ=60)
                                       GTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGGCCG                                                       >  SRR4302532.6128488/1‑94 (MQ=60)
                                        TAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGGAATCGAACCGCAGGGAGCCCGG                                                      >  SRR4302532.2833866/1‑94 (MQ=60)
                                            CAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGGCCGGATCC                                                  >  SRR4302532.2105172/1‑94 (MQ=60)
                                             AGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGGAAGTCTTCGCTGTAATCGAAGCGCAGGGAGcccgcagccc                                                 >  SRR4302532.1468726/1‑84 (MQ=60)
                                              GCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCAT                                                <  SRR4302532.2087008/94‑1 (MQ=60)
                                               CGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATA                                               <  SRR4302532.4497994/94‑1 (MQ=60)
                                                GTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATAT                                              >  SRR4302532.5784617/1‑94 (MQ=60)
                                                GTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATAT                                              <  SRR4302532.4657639/94‑1 (MQ=60)
                                                 TTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATC                                             <  SRR4302532.5464343/94‑1 (MQ=60)
                                                 TTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGCCTGAGGGAGTTTTTGCTGTAATCGGAGAGCAGGGAGTTCGGAACCATATC                                             >  SRR4302532.4126064/1‑94 (MQ=60)
                                                  TGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCC                                            <  SRR4302532.4272214/94‑1 (MQ=60)
                                                  TGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGGGCGGATCCATATCC                                            >  SRR4302532.2442130/1‑94 (MQ=60)
                                                  TGCCAGCTCTTTGCTTTGCGCGGCAGTCACGGTATAGGCGGGGCTGAGGGAGACTTCGCTGGAATCGAAGCGCAGGGAGgacggatgcctatcc                                            >  SRR4302532.3128209/1‑79 (MQ=60)
                                                   GCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCA                                           <  SRR4302532.1606328/94‑1 (MQ=60)
                                                   GCCAGCTCTGTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCA                                           <  SRR4302532.3788165/94‑1 (MQ=60)
                                                    CCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTTGCTGTAATCGAAGCGCAGGGAGACCGGATCCATATCCAG                                          >  SRR4302532.6249514/1‑94 (MQ=60)
                                                    CCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCCGGGAGTCCGGATCCATATCCAG                                          >  SRR4302532.2301545/1‑94 (MQ=60)
                                                    CCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCCG                                          >  SRR4302532.725214/1‑94 (MQ=60)
                                                    CCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAG                                          <  SRR4302532.1769921/94‑1 (MQ=60)
                                                    CCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAG                                          <  SRR4302532.3964655/94‑1 (MQ=60)
                                                    CCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAG                                          <  SRR4302532.4003169/94‑1 (MQ=60)
                                                    CCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGGGAGTCTTCGCTGTAATCGAAGCGCAGGGGGTCCGGATCCATCTCCAC                                          >  SRR4302532.1508925/1‑94 (MQ=60)
                                                      AGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCT                                        >  SRR4302532.1175585/1‑94 (MQ=60)
                                                       GCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATACAGCTC                                       >  SRR4302532.2891897/1‑94 (MQ=60)
                                                         TCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGC                                     >  SRR4302532.4243580/1‑94 (MQ=60)
                                                          CTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCG                                    >  SRR4302532.5743810/1‑94 (MQ=60)
                                                           TTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCCG                                   >  SRR4302532.130770/1‑94 (MQ=60)
                                                           TTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGGGTCCGGATCCATATCCAGCTCGCGG                                   <  SRR4302532.5259563/94‑1 (MQ=60)
                                                            TTGCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGG                                  <  SRR4302532.1337553/94‑1 (MQ=60)
                                                            TTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGG                                  <  SRR4302532.1056315/94‑1 (MQ=60)
                                                             TGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGC                                 <  SRR4302532.2748982/94‑1 (MQ=60)
                                                              GCTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCC                                <  SRR4302532.6312319/94‑1 (MQ=60)
                                                               CTTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCA                               <  SRR4302532.3911391/94‑1 (MQ=60)
                                                               CTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCA                               <  SRR4302532.4523194/94‑1 (MQ=60)
                                                               CTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCA                               >  SRR4302532.5848723/1‑94 (MQ=60)
                                                                TTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCAT                              <  SRR4302532.2995231/94‑1 (MQ=60)
                                                                TTTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGCGAGTCTTCGCTGTAATCTAAGCGCAGGGAGTTCGGGTCCATATCCAccttcctggccat                              >  SRR4302532.4744904/1‑81 (MQ=60)
                                                                TTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCAT                              >  SRR4302532.6004307/1‑94 (MQ=60)
                                                                 TTGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATC                             <  SRR4302532.2395194/94‑1 (MQ=60)
                                                                 TTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATC                             <  SRR4302532.2988646/94‑1 (MQ=60)
                                                                  TGCGCGGCAGTCACGTTATAGGCGGGGCTTAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCG                            <  SRR4302532.5580624/94‑1 (MQ=60)
                                                                  TGCGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCG                            <  SRR4302532.1892188/94‑1 (MQ=60)
                                                                    CGCGGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCCGGCCATCGTC                          >  SRR4302532.2221401/1‑94 (MQ=60)
                                                                       GGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCT                       >  SRR4302532.2627050/1‑94 (MQ=60)
                                                                       GGCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGATCGCGGGGCCTCGCCCCT                       >  SRR4302532.3556679/1‑94 (MQ=60)
                                                                        GCAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG                      >  SRR4302532.917620/1‑94 (MQ=60)
                                                                        GCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTG                      <  SRR4302532.679025/94‑1 (MQ=60)
                                                                         CAGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTGA                     >  SRR4302532.4907864/1‑94 (MQ=60)
                                                                          AGTCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTGAC                    >  SRR4302532.3403276/1‑94 (MQ=60)
                                                                          AGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTGAC                    <  SRR4302532.2806393/94‑1 (MQ=60)
                                                                          AGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTGAC                    <  SRR4302532.1650407/94‑1 (MQ=60)
                                                                          AGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTGAC                    <  SRR4302532.856637/94‑1 (MQ=60)
                                                                           GTCACGTTATAGGCTGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCTGATCCATATCCAGCTCGCGGGCCATCGTCCCTGACA                   <  SRR4302532.3200087/94‑1 (MQ=60)
                                                                           GTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCCTCGTCCCTGACA                   >  SRR4302532.6027865/1‑94 (MQ=60)
                                                                            TCACGTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTGACAG                  <  SRR4302532.2952687/94‑1 (MQ=60)
                                                                            TCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTGACAG                  <  SRR4302532.3448676/94‑1 (MQ=60)
                                                                               CGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTGACAGCCA               >  SRR4302532.3289975/1‑94 (MQ=60)
                                                                               CGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAACTCGCGGGCCATCGTCCCTGACAGCCA               >  SRR4302532.5898826/1‑94 (MQ=60)
                                                                                GTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTGACAGCCAG              <  SRR4302532.3991970/94‑1 (MQ=60)
                                                                                GTTATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTGACAGCCAG              >  SRR4302532.246960/1‑94 (MQ=60)
                                                                                GTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTGACAGCCAG              <  SRR4302532.3118088/94‑1 (MQ=60)
                                                                                GTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTGACAGCCAG              <  SRR4302532.3458656/94‑1 (MQ=60)
                                                                                  TATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTGACAGCCAGGC            <  SRR4302532.4309343/94‑1 (MQ=60)
                                                                                   ATAGGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTGACAGCCAGGCC           <  SRR4302532.4991583/94‑1 (MQ=60)
                                                                                      GGCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTGACAGCCAGGCCGTT        <  SRR4302532.1406404/94‑1 (MQ=60)
                                                                                       GCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTGACAGCCAGGCCGTTT       <  SRR4302532.6121704/94‑1 (MQ=60)
                                                                                       GCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTGACAGCCAGGCCGTTT       <  SRR4302532.6205916/94‑1 (MQ=60)
                                                                                       GCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTGACAGCCAGGCCGTTT       >  SRR4302532.1983055/1‑94 (MQ=60)
                                                                                       GCGGGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTGACAGCCAGGCCGTTT       <  SRR4302532.3647772/94‑1 (MQ=60)
                                                                                       GCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTGACAGCCAGGCCGTTT       <  SRR4302532.1368210/94‑1 (MQ=60)
                                                                                        CGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTGACAGCCAGGCCGTTTG      >  SRR4302532.2107121/1‑94 (MQ=60)
                                                                                          GGGCTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTGACAGCCAGGCCGTTTGCT    >  SRR4302532.1644130/1‑94 (MQ=60)
                                                                                          GGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTGACAGCCAGGCCGTTTGCT    >  SRR4302532.3307603/1‑94 (MQ=60)
                                                                                           GACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTGACAGCCAGGCCGTTTGCTC   <  SRR4302532.222535/94‑1 (MQ=60)
                                                                                            ACTGAGGGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTGACAGCCAGGCCGTTTGCTCC  >  SRR4302532.2845264/1‑94 (MQ=60)
                                                                                            |                                                                                             
GTGATCGCGCTCACATGAACACGCAACCTTTCTGCCAGAGTAAGCAGCGTTGCCAGCTCTTTGCTTTGCGCGGCAGTCACGTTATAGGCGGGACTGAGTGAGTCTTCGCTGTAATCGAAGCGCAGGGAGTCCGGATCCATATCCAGCTCGCGGGCCATCGTCCCTGACAGCCAGGCCGTTTGCTCC  >  NC_000913/3519917‑3520102

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑