Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 521 238.2 12299412 96.0% 11807435 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCTGGCTGTAAAATTATCCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGATTCGCCCGCCGCTAACATGGTTAAAATCTCCCG  >  NC_000913/3668900‑3669086
                                                                                             |                                                                                             
GCTGGCTGTAAAATTATCCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCAATTTTTCACTTCCAGACGGCGATACAGGGATTC                                                                                               <  SRR4302532.6052682/94‑1 (MQ=60)
 CTGGCTGTAAAATTATCCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTC                                                                                              >  SRR4302532.4957548/1‑94 (MQ=60)
 CTGGCTGTAAAATTATCCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTC                                                                                              >  SRR4302532.6132295/1‑94 (MQ=60)
 CTGGCTGTAAAATTATCCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTC                                                                                              <  SRR4302532.2527748/94‑1 (MQ=60)
  TGGCTGTAAAATTATCCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCA                                                                                             <  SRR4302532.1978693/94‑1 (MQ=60)
   GGCTGTAAAATTATCCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAG                                                                                            >  SRR4302532.3192042/1‑94 (MQ=60)
   GGCTGTAAAATTATCCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAG                                                                                            >  SRR4302532.765956/1‑94 (MQ=60)
   GGCTGTAAAATTATCCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAG                                                                                            >  SRR4302532.4885752/1‑94 (MQ=60)
    GCTGTAAAATTATCCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGA                                                                                           >  SRR4302532.3381351/1‑94 (MQ=60)
     CTGTAAAATTATCCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGAT                                                                                          <  SRR4302532.532839/94‑1 (MQ=60)
      TGTAAAATTATCCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATG                                                                                         >  SRR4302532.1901181/1‑94 (MQ=60)
       GTAAAATTATCCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGC                                                                                        <  SRR4302532.4167858/94‑1 (MQ=60)
         AAAATTATCCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGC                                                                                      >  SRR4302532.4994970/1‑94 (MQ=60)
         AAAATTATCCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGC                                                                                      >  SRR4302532.2014421/1‑94 (MQ=60)
          AAATTATCCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGTGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCT                                                                                     >  SRR4302532.6031686/1‑94 (MQ=60)
           AATTATCCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTT                                                                                    <  SRR4302532.1167174/94‑1 (MQ=60)
             TTATCCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTT                                                                                  <  SRR4302532.5346007/94‑1 (MQ=60)
             TTATCCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTT                                                                                  <  SRR4302532.1020389/94‑1 (MQ=60)
             TTATCCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTT                                                                                  >  SRR4302532.2406832/1‑94 (MQ=60)
              cttccgatcttcgggatGATATTTAACATCATTGCCGCCTGGGGGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTA                                                                                 >  SRR4302532.1333871/18‑94 (MQ=60)
               ATCCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGACACAGGGATTCCAGATGCGCTTTTAC                                                                                <  SRR4302532.1069743/94‑1 (MQ=60)
                TCCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACC                                                                               >  SRR4302532.2442306/1‑94 (MQ=60)
                TCCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACC                                                                               >  SRR4302532.2442305/1‑94 (MQ=60)
                 CCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCG                                                                              <  SRR4302532.75947/94‑1 (MQ=60)
                 CCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCG                                                                              >  SRR4302532.1944639/1‑94 (MQ=60)
                 CCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCG                                                                              <  SRR4302532.5112445/94‑1 (MQ=60)
                 CCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCG                                                                              <  SRR4302532.2068938/94‑1 (MQ=60)
                 CCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCG                                                                              >  SRR4302532.2396501/1‑94 (MQ=60)
                 CCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGCGATTCCAGATGCGCTTTTACCG                                                                              <  SRR4302532.4148670/94‑1 (MQ=60)
                  CTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGT                                                                             >  SRR4302532.6031050/1‑94 (MQ=60)
                    CTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAATGATTTCAGATGCGCTTTTACtcttc                                                                           >  SRR4302532.1611955/1‑89 (MQ=60)
                     TTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCC                                                                          >  SRR4302532.1703072/1‑94 (MQ=60)
                       CAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGG                                                                        >  SRR4302532.648328/1‑94 (MQ=60)
                         GGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTA                                                                      <  SRR4302532.2680902/94‑1 (MQ=60)
                         GGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTA                                                                      <  SRR4302532.2085385/94‑1 (MQ=60)
                         GGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTA                                                                      <  SRR4302532.1078825/94‑1 (MQ=60)
                           AGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACT                                                                    >  SRR4302532.1112404/1‑94 (MQ=60)
                           AGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACT                                                                    >  SRR4302532.4990717/1‑94 (MQ=60)
                              AGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGAT                                                                 <  SRR4302532.1053204/94‑1 (MQ=60)
                              AGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGAT                                                                 >  SRR4302532.6346858/1‑94 (MQ=60)
                               GATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATA                                                                >  SRR4302532.3787480/1‑94 (MQ=60)
                               GATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATA                                                                >  SRR4302532.6089419/1‑94 (MQ=60)
                               GATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATA                                                                >  SRR4302532.6089420/1‑94 (MQ=60)
                                ATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATAT                                                               <  SRR4302532.5581023/94‑1 (MQ=60)
                                 TATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATT                                                              <  SRR4302532.4451225/94‑1 (MQ=60)
                                 TATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATT                                                              <  SRR4302532.5833929/94‑1 (MQ=60)
                                 TATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATT                                                              >  SRR4302532.1785852/1‑94 (MQ=60)
                                  ATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATTC                                                             <  SRR4302532.4916487/94‑1 (MQ=60)
                                   TTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTTCCGTTCCGGTACTGATATTCA                                                            <  SRR4302532.4211858/94‑1 (MQ=60)
                                   TTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATTCA                                                            >  SRR4302532.2117864/1‑94 (MQ=60)
                                   TTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCA                                                            <  SRR4302532.5474639/94‑1 (MQ=60)
                                    TTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAG                                                           <  SRR4302532.1000419/94‑1 (MQ=60)
                                    TTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAG                                                           <  SRR4302532.1639675/94‑1 (MQ=60)
                                    TTAACATCATTGCCGCCTGGGGGGGATTTTTCCCTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTCCTGATATTCAG                                                           >  SRR4302532.4035885/1‑94 (MQ=60)
                                     TAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGC                                                          <  SRR4302532.5251650/94‑1 (MQ=60)
                                         ATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTC                                                      >  SRR4302532.1943260/1‑94 (MQ=60)
                                          TCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCT                                                     >  SRR4302532.2758262/1‑94 (MQ=60)
                                          TCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCT                                                     <  SRR4302532.4781378/94‑1 (MQ=60)
                                          TCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCT                                                     <  SRR4302532.321788/94‑1 (MQ=60)
                                            ATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGC                                                   >  SRR4302532.2608262/1‑94 (MQ=60)
                                            ATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGAGACAGGGATTTCAGATGCGATTTTACCGTTCCGGTACTGATAATCAGCGCTCTGC                                                   >  SRR4302532.2577342/1‑94 (MQ=60)
                                             TTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCC                                                  <  SRR4302532.5969636/94‑1 (MQ=60)
                                                 CGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATC                                              >  SRR4302532.1262366/1‑94 (MQ=60)
                                                 CGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATC                                              >  SRR4302532.1778219/1‑94 (MQ=60)
                                                  GCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCT                                             <  SRR4302532.275619/94‑1 (MQ=60)
                                                  GCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCT                                             <  SRR4302532.5463802/94‑1 (MQ=60)
                                                   CCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTC                                            >  SRR4302532.282491/1‑94 (MQ=60)
                                                     TGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCT                                          <  SRR4302532.3968795/94‑1 (MQ=60)
                                                     TGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCT                                          <  SRR4302532.3968794/94‑1 (MQ=60)
                                                     TGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCT                                          >  SRR4302532.5551806/1‑94 (MQ=60)
                                                     TGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCT                                          <  SRR4302532.5409933/94‑1 (MQ=60)
                                                      TGGTGCGATTTTTCTCTTCCAGACGGTGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGTTACTGATATTCAGCGCTCTGCCGATCTCCTT                                         <  SRR4302532.5953173/94‑1 (MQ=60)
                                                      GGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTT                                         >  SRR4302532.2378377/1‑94 (MQ=60)
                                                      GGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTT                                         >  SRR4302532.2340471/1‑94 (MQ=60)
                                                      GGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTT                                         >  SRR4302532.1401420/1‑94 (MQ=60)
                                                      GGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTT                                         <  SRR4302532.2065158/94‑1 (MQ=60)
                                                      GGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTT                                         >  SRR4302532.2049042/1‑94 (MQ=60)
                                                       GGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTA                                        >  SRR4302532.5441747/1‑94 (MQ=60)
                                                       GGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTA                                        <  SRR4302532.324832/94‑1 (MQ=60)
                                                        GTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTAT                                       >  SRR4302532.5803164/1‑94 (MQ=60)
                                                         TGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATT                                      <  SRR4302532.2714518/94‑1 (MQ=60)
                                                           CGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTG                                    <  SRR4302532.4957729/94‑1 (MQ=60)
                                                           CGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTG                                    <  SRR4302532.5762514/94‑1 (MQ=60)
                                                           CGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTG                                    <  SRR4302532.2577464/94‑1 (MQ=60)
                                                            GATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGA                                   >  SRR4302532.2179545/1‑94 (MQ=60)
                                                               TTTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGATTC                                <  SRR4302532.2860413/94‑1 (MQ=60)
                                                               TTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGATTC                                <  SRR4302532.6216620/94‑1 (MQ=60)
                                                                TTTCACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGATTCG                               <  SRR4302532.1630012/94‑1 (MQ=60)
                                                                TTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGATTCG                               <  SRR4302532.5124919/94‑1 (MQ=60)
                                                                   CACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGATTCGCCC                            <  SRR4302532.3518006/94‑1 (MQ=60)
                                                                   CACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGATTCGCCC                            <  SRR4302532.5299049/94‑1 (MQ=60)
                                                                    CCTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGATTCGCCCG                           <  SRR4302532.5074712/94‑1 (MQ=60)
                                                                    ACTTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGATTCGCCCG                           >  SRR4302532.1561937/1‑94 (MQ=60)
                                                                    ACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGATTCGCCCG                           >  SRR4302532.2976184/1‑94 (MQ=60)
                                                                     CTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGATTCGCCCGC                          >  SRR4302532.3250004/1‑94 (MQ=60)
                                                                     CTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGATTCGCCCGC                          >  SRR4302532.5542581/1‑94 (MQ=60)
                                                                      TTCCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGATTCGCCCGCC                         >  SRR4302532.4509232/1‑94 (MQ=60)
                                                                        CCAGACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGATTCGCCCGCCGC                       >  SRR4302532.4601189/1‑94 (MQ=60)
                                                                           GACGGCGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGATTCGCCCGCCGCTAA                    >  SRR4302532.3547587/1‑94 (MQ=60)
                                                                              GGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGATTCGCCCGCCGCTAACAT                 >  SRR4302532.89595/1‑94 (MQ=60)
                                                                               GCGATAGAGGGATTCGAGATGCTTTTTCCCCGTTCCGGTACTTATATTCAGCGCTGTGCCTTTCTCCTTATTTGATTCGCCCGCCGCTAACATG                <  SRR4302532.3006368/94‑1 (MQ=44)
                                                                                CGATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGATTCGCCCGCCGCTAACATGG               >  SRR4302532.492708/1‑94 (MQ=60)
                                                                                CGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGATTCGCCCGCCGCTAACATGG               >  SRR4302532.4945214/1‑94 (MQ=60)
                                                                                CGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGATTCGCCCGCCGCTAACATGG               >  SRR4302532.1415613/1‑94 (MQ=60)
                                                                                 GATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGATTCGCCCGCCGCTAACATGGT              >  SRR4302532.4803107/1‑94 (MQ=60)
                                                                                  ATACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGATTCGCCCGCCGCTAACATGGTT             >  SRR4302532.2318296/1‑94 (MQ=60)
                                                                                    ACAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGATTCGCCCGCCGCTAACATGGTTAA           >  SRR4302532.3686384/1‑94 (MQ=60)
                                                                                     CGGGGATCCCAGATGCTTTTTTCCCGTTCGGGTACTGATTTTCAGCGCTTTGCCGATCTCTTTATTTGATCCGCCCGCCGCTAACATGGTTAAA          <  SRR4302532.862382/94‑1 (MQ=48)
                                                                                     CAGGGATTTCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGATTCGCCCGCCGCTAACATGGTTAAA          >  SRR4302532.5894047/1‑94 (MQ=60)
                                                                                      AGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGATTCGCCCGCCGCTAACATGGTTACAA         >  SRR4302532.1894121/1‑94 (MQ=60)
                                                                                      AGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGATTCGCCCGCCGCTAACATGGTTAAAA         >  SRR4302532.2396344/1‑94 (MQ=60)
                                                                                       GGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGATTCGCCCGCCGCTAACATGGTTAAAAT        >  SRR4302532.957891/1‑94 (MQ=60)
                                                                                           TTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGATTCGCCCGCCGCTAACATGGTTAAAATCTCC    >  SRR4302532.2259886/1‑94 (MQ=60)
                                                                                            TCCAGATGCGTTTTTCCCGTTCCGTTATTGATATCCCGCCCCCTCCCGTTCTCTTTATTTGTTTCCCCCGCCGCTAACATGGTTAAAATCTCCC   <  SRR4302532.4393515/94‑1 (MQ=16)
                                                                                             TCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGATTCGCCCGCCGCTAACATGGTTAAAATCTCCCG  >  SRR4302532.1183608/1‑94 (MQ=60)
                                                                                             |                                                                                             
GCTGGCTGTAAAATTATCCTCTTCAGGAGGAGATATTTAACATCATTGCCGCCTGGGTGCGATTTTTCACTTCCAGACGGCGATACAGGGATTCCAGATGCGCTTTTACCGTTCCGGTACTGATATTCAGCGCTCTGCCGATCTCCTTATTTGATTCGCCCGCCGCTAACATGGTTAAAATCTCCCG  >  NC_000913/3668900‑3669086

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑